Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0009146

Physical Location & Seq

Genomic Coordinates Reverse (-)

7732954 .. 7735339

Gene Structure 2386 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1107900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGAGATGATATATTACCAGCCTTCTTACCAGGAGTCCTTGAGTGCTTTAGAGGCAGATATACAGCATGCAAATTCTCTAGCTGCTGCAATTCCGAGAGGCAAAGGCGGTGCCCGGTTTCAGATGAAATTGGTTTACAATCAGTTGGCTCCCCTATTTATGTTTTTGTTGCAATGGATTGATTGCTCATGCACTTGCCTGCTCCCTAGATACCTAAATTTCTTCCACATACGTGTCTACAAGGTATACACAGACGGTAGGCCTAGTCTTTCAACTCATGGAAGGAAAGCTTCTATAAGGGACTTCTATTCTGTCATCTTACCGTCTCTTCAGCGGCTTCACGGGGATTTGGGGGAGTTGGATGATGCTAAGGAAGGACATCCTAGGCTTCCTAGCATGGAAAGCTCTGGCAAGAAGATGATTAAGGGAGATGGTAGCCTTGTCAATGCTGAGGTGGAGAGGGAAGAGGAGTGTGGGATTTGTTTAGAGCCTTGCACCAAAGTGGTCTTGCCTAATTGCTGTCACGCAATGTGCATCAAATGCTACCGCAATTGGAATAGAAAGTCGGAGTCTTGCCCATTTTGTCGTGGTAATATAAAGAGAGTTAATTCTCAAGACTTATGGGTGCTCACTTGCAACGATGATGTGGTTGACACCGAAACAGTTTCTAAAGAGGACTTGTTGCGTTTCTACCTCTATATCAACAGCCTGCCGAAAGATTACCCAGACGCCCTCTTCTTGGTGTATTACGAGTATTCTAATTTGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-RING_2

Protein Analysis

257

Amino Acids

29.42

Weight (kDa)

6.31

Isoelectric Point (pI)

43.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	155 - 202	8.1e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	157 - 196	4e-07	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13195 AT1G13195 AT1G24440 AT1G24440
fragaria_vesca	FvH4_4g24910 FvH4_4g24910
malus_domestica	MD13G1107900.v1.1 MD16G1107800.v1.1
prunus_persica	Prupe.1G238500_v2.0.a1 Prupe.1G238500_v2.0.a1
pyrus_communis	pycom13g09330 pycom16g09200
rosa_chinensis	RchiOBHm_Chr4g0431971
rosa_laevigata	RLG00000006870
rosa_multiflora	Rmu_sc0004965.1_g000015
rosa_roxburghii	Rroxscaffold_5G00373410
rosa_rugosa	Rorug04G0253800
rosa_samantha	Rh4AG310900 Rh4BG318000 Rh4CG333400 Rh4DG313000
rosa_wichuraiana	Rw4G027050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	110
AccI	GTMKAC	2 cut(s)	237, 246
AciI	CCGC	3 cut(s)	108, 334, 547
AcsI	RAATTY	2 cut(s)	73, 217
AcuI	CTGAAG	1 cut(s)	314
AcyI	GRCGYC	1 cut(s)	729
AfiI	CCNNNNNNNGG	1 cut(s)	739
AflIII	ACRYGT	1 cut(s)	232
AgsI	TTSAA	1 cut(s)	273
AjnI	CCWGG	1 cut(s)	30
AleI	CACNNNNGTG	2 cut(s)	231, 500
AluBI	AGCT	3 cut(s)	83, 290, 405
AluI	AGCT	3 cut(s)	83, 290, 405
Alw21I	GWGCWC	1 cut(s)	630
Alw26I	GTCTC	1 cut(s)	330
AoxI	GGCC	1 cut(s)	260
ApeKI	GCWGC	2 cut(s)	83, 86
ApoI	RAATTY	2 cut(s)	73, 217
AspA2I	CCTAGG	1 cut(s)	383
AsuC2I	CCSGG	1 cut(s)	115
AvrII	CCTAGG	1 cut(s)	383
BaeGI	GKGCMC	1 cut(s)	115
BanI	GGYRCC	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	630
BbvCI	CCTCAGC	1 cut(s)	450
BbvI	GCAGC	2 cut(s)	70, 73
BccI	CCATC	1 cut(s)	425
BciT130I	CCWGG	1 cut(s)	32
BcnI	CCSGG	1 cut(s)	115
BcoDI	GTCTC	1 cut(s)	330
BfaI	CTAG	5 cut(s)	80, 207, 264, 384, 393
BisI	GCNGC	3 cut(s)	84, 87, 335
BlnI	CCTAGG	1 cut(s)	383
BlsI	GCNGC	3 cut(s)	85, 88, 336
Bme1390I	CCNGG	2 cut(s)	32, 115
BmiI	GGNNCC	2 cut(s)	112, 150
BmrFI	CCNGG	2 cut(s)	32, 115
BmsI	GCATC	2 cut(s)	355, 543
Bpu10I	CCTNAGC	2 cut(s)	369, 450
BpuEI	CTTGAG	2 cut(s)	61, 597
BpuMI	CCSGG	1 cut(s)	115
BsaAI	YACGTR	1 cut(s)	233
BsaHI	GRCGYC	1 cut(s)	729
BsaJI	CCNNGG	1 cut(s)	383
Bsc4I	CCNNNNNNNGG	1 cut(s)	739
Bse3DI	GCAATG	2 cut(s)	179, 534
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	383
BseGI	GGATG	2 cut(s)	367, 379
BseLI	CCNNNNNNNGG	1 cut(s)	739
BseMI	GCAATG	2 cut(s)	179, 534
BseMII	CTCAG	1 cut(s)	441
BseRI	GAGGAG	1 cut(s)	482
BseSI	GKGCMC	1 cut(s)	115
BseXI	GCAGC	2 cut(s)	70, 73
BshFI	GGCC	1 cut(s)	262
BshNI	GGYRCC	1 cut(s)	110
BsiHKAI	GWGCWC	1 cut(s)	630
BsiSI	CCGG	1 cut(s)	115
BslFI	GGGAC	1 cut(s)	314
BslI	CCNNNNNNNGG	1 cut(s)	739
BsmAI	GTCTC	1 cut(s)	330
BsmBI	CGTCTC	1 cut(s)	330
BsmFI	GGGAC	1 cut(s)	314
BsnI	GGCC	1 cut(s)	262
Bsp1286I	GDGCHC	2 cut(s)	115, 630
BspACI	CCGC	3 cut(s)	108, 334, 547
BspANI	GGCC	1 cut(s)	262
BspCNI	CTCAG	1 cut(s)	442
BspLI	GGNNCC	2 cut(s)	112, 150
BspT107I	GGYRCC	1 cut(s)	110
BsrDI	GCAATG	2 cut(s)	179, 534
BssECI	CCNNGG	1 cut(s)	383
BssNAI	GTATAC	1 cut(s)	247
BssNI	GRCGYC	1 cut(s)	729
BssT1I	CCWWGG	1 cut(s)	383
Bst1107I	GTATAC	1 cut(s)	247
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	3 cut(s)	257, 324, 664
Bst6I	CTCTTC	3 cut(s)	333, 459, 740
BstACI	GRCGYC	1 cut(s)	729
BstAPI	GCANNNNNTGC	1 cut(s)	540
BstBAI	YACGTR	1 cut(s)	233
BstC8I	GCNNGC	3 cut(s)	69, 200, 710
BstDEI	CTNAG	2 cut(s)	369, 450
BstF5I	GGATG	2 cut(s)	367, 379
BstMAI	GTCTC	1 cut(s)	330
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 402, 540
BstNI	CCWGG	1 cut(s)	32
BstNSI	RCATGY	1 cut(s)	71
BstSCI	CCNGG	2 cut(s)	30, 113
BstSLI	GKGCMC	1 cut(s)	115
BstV1I	GCAGC	2 cut(s)	70, 73
BstZ17I	GTATAC	1 cut(s)	247
BsuRI	GGCC	1 cut(s)	262
BtsCI	GGATG	2 cut(s)	367, 379
Cac8I	GCNNGC	3 cut(s)	69, 200, 710
CseI	GACGC	1 cut(s)	737
CviAII	CATG	4 cut(s)	68, 189, 278, 397
DdeI	CTNAG	2 cut(s)	369, 450
Eam1104I	CTCTTC	3 cut(s)	333, 459, 740
EarI	CTCTTC	3 cut(s)	333, 459, 740
Eco130I	CCWWGG	1 cut(s)	383
Eco147I	AGGCCT	1 cut(s)	262
Eco57I	CTGAAG	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	30
EcoT14I	CCWWGG	1 cut(s)	383
ErhI	CCWWGG	1 cut(s)	383
Esp3I	CGTCTC	1 cut(s)	330
FaeI	CATG	4 cut(s)	71, 192, 281, 400
FalI	AAGNNNNNCTT	2 cut(s)	274, 306
FaqI	GGGAC	1 cut(s)	314
FatI	CATG	4 cut(s)	67, 188, 277, 396
FblI	GTMKAC	2 cut(s)	237, 246
Fnu4HI	GCNGC	3 cut(s)	84, 87, 335
FokI	GGATG	2 cut(s)	366, 374
Fsp4HI	GCNGC	3 cut(s)	84, 87, 335
FspBI	CTAG	5 cut(s)	80, 207, 264, 384, 393
GluI	GCNGC	3 cut(s)	84, 87, 335
HaeIII	GGCC	1 cut(s)	262
HapII	CCGG	1 cut(s)	115
HgaI	GACGC	1 cut(s)	737
Hin1I	GRCGYC	1 cut(s)	729
Hin1II	CATG	4 cut(s)	71, 192, 281, 400
HincII	GTYRAC	1 cut(s)	652
HindII	GTYRAC	1 cut(s)	652
HindIII	AAGCTT	1 cut(s)	288
HinfI	GANTC	2 cut(s)	35, 569
HpaII	CCGG	1 cut(s)	115
Hpy166II	GTNNAC	4 cut(s)	136, 238, 247, 652
Hpy188I	TCNGA	3 cut(s)	96, 123, 568
Hpy188III	TCNNGA	1 cut(s)	614
Hpy8I	GTNNAC	4 cut(s)	136, 238, 247, 652
HpyAV	CCTTC	3 cut(s)	33, 276, 368
HpyCH4III	ACNGT	3 cut(s)	257, 324, 664
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	7 cut(s)	71, 89, 172, 192, 495, 534, 636
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 402, 540
HpyF3I	CTNAG	2 cut(s)	369, 450
HpySE526I	ACGT	1 cut(s)	232
Hsp92I	GRCGYC	1 cut(s)	729
Hsp92II	CATG	4 cut(s)	71, 192, 281, 400
LmnI	GCTCC	2 cut(s)	154, 207
LpnPI	CCDG	8 cut(s)	17, 32, 44, 128, 212, 393, 722, 738
Lsp1109I	GCAGC	2 cut(s)	70, 73
LweI	GCATC	2 cut(s)	355, 543
MaeI	CTAG	5 cut(s)	80, 207, 264, 384, 393
MaeII	ACGT	1 cut(s)	232
MaeIII	GTNAC	1 cut(s)	521
MboII	GAAGA	5 cut(s)	214, 320, 427, 476, 727
MfeI	CAATTG	1 cut(s)	550
MhlI	GDGCHC	2 cut(s)	115, 630
MluCI	AATT	8 cut(s)	73, 90, 128, 217, 514, 550, 607, 760
MlyI	GAGTC	2 cut(s)	44, 578
MmeI	TCCRAC	2 cut(s)	339, 546
MnlI	CCTC	8 cut(s)	46, 92, 445, 453, 460, 667, 704, 743
MseI	TTAA	2 cut(s)	423, 606
MslI	CAYNNNNRTG	2 cut(s)	231, 500
MspA1I	CMGCKG	1 cut(s)	334
MspI	CCGG	1 cut(s)	115
MspR9I	CCNGG	2 cut(s)	32, 115
MunI	CAATTG	1 cut(s)	550
MvaI	CCWGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	3 cut(s)	53, 402, 540
NciI	CCSGG	1 cut(s)	115
NlaIII	CATG	4 cut(s)	71, 192, 281, 400
NlaIV	GGNNCC	2 cut(s)	112, 150
NmuCI	GTSAC	1 cut(s)	521
NspI	RCATGY	1 cut(s)	71
OliI	CACNNNNGTG	2 cut(s)	231, 500
PaeI	GCATGC	1 cut(s)	71
PceI	AGGCCT	1 cut(s)	262
PkrI	GCNGC	3 cut(s)	85, 88, 336
PleI	GAGTC	2 cut(s)	43, 577
PpsI	GAGTC	2 cut(s)	43, 577
Ppu21I	YACGTR	1 cut(s)	233
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	2 cut(s)	112, 150
RseI	CAYNNNNRTG	2 cut(s)	231, 500
SaqAI	TTAA	2 cut(s)	423, 606
SatI	GCNGC	3 cut(s)	84, 87, 335
SchI	GAGTC	2 cut(s)	44, 578
ScrFI	CCNGG	2 cut(s)	32, 115
SduI	GDGCHC	2 cut(s)	115, 630
SetI	ASST	8 cut(s)	85, 216, 235, 246, 292, 407, 456, 696
SfaNI	GCATC	2 cut(s)	355, 543
SmiMI	CAYNNNNRTG	2 cut(s)	231, 500
SmlI	CTYRAG	2 cut(s)	40, 612
SmoI	CTYRAG	2 cut(s)	40, 612
SphI	GCATGC	1 cut(s)	71
Sse9I	AATT	8 cut(s)	73, 90, 128, 217, 514, 550, 607, 760
SseBI	AGGCCT	1 cut(s)	262
SsiI	CCGC	3 cut(s)	108, 334, 547
SspMI	CTAG	5 cut(s)	80, 207, 264, 384, 393
StuI	AGGCCT	1 cut(s)	262
StyD4I	CCNGG	2 cut(s)	30, 113
StyI	CCWWGG	1 cut(s)	383
TaaI	ACNGT	3 cut(s)	257, 324, 664
TaiI	ACGT	1 cut(s)	235
TasI	AATT	8 cut(s)	73, 90, 128, 217, 514, 550, 607, 760
TauI	GCSGC	1 cut(s)	337
Tru1I	TTAA	2 cut(s)	423, 606
Tru9I	TTAA	2 cut(s)	423, 606
TseFI	GTSAC	1 cut(s)	521
TseI	GCWGC	2 cut(s)	83, 86
Tsp45I	GTSAC	1 cut(s)	521
TspDTI	ATGAA	1 cut(s)	140
XapI	RAATTY	2 cut(s)	73, 217
XceI	RCATGY	1 cut(s)	71
XmaJI	CCTAGG	1 cut(s)	383
XmiI	GTMKAC	2 cut(s)	237, 246
XspI	CTAG	5 cut(s)	80, 207, 264, 384, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.