Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0009146

Physical Location & Seq

Genomic Coordinates Reverse (-)

7547412 .. 7549450

Gene Structure 2039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1107800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGAGATGATTTATTACCAGCCTTCTTACCAGGAGTCCTTGAGTGCTTTAGAGGCAGATATACAGCATGCAAATTCTCTAGCTGCTGCAATTCCGAGAGGCAAAGGCGGTGCCCGGTTTCAGATGAAATTGGTTTACAGTCACTTGGCCCCCCTCTTTCTGTTTTTGTTGCAATGGTTTGATTGCTCAATCACTTGCCTGCTCCCAAGATACCTAAATTTCTTCCACATACTTGTCTACAAGGTATACACAGATGGCAGGCCCAGCATTTCAACTCATGGACGGAAGGCTTCTATAAGGGACTTCTATTCCGTTATCTTACCGTCTCTTCAGCGGCTGCACGGGGATTTGGGGGAGTTAGACGATTCTAAGGATGGAGATCCTAGGGTTCCCAGCATGGAAAGCTCTGGAAAGAAGATGATTAAGGGAGATGGTAGCCTTGTCAATGCTGAGGGGGAGAGAGAAGAGGAGTGTGGGATATGTTTAGAGCCTTGCACCAAAGTGGTCTTGCCTAATTGCTGTCACGCAATGTGCATCAAATGCTACCGCAATTGGAGTAGAAAGTCGGAGTCTTGCCCATTTTGCCGTGGTAATATAAAGAGAGTTAAGTCTCAAGACTTATGGGTGCTCACTTGCAACGAAGATGTGGTTGACACCGAAACGGTTTCAAAAGAGGACTTGTTGCGTTTCTACCTCTATATCAACAGCCTGCCGAAAGATTACCCGGATGCCCTCTTCTTGGTGTACTACGAGTATTCTAATTTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-RING_2

Protein Analysis

257

Amino Acids

29.31

Weight (kDa)

6.09

Isoelectric Point (pI)

43.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	155 - 202	9.6e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	157 - 196	3.9e-07	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13195 AT1G13195 AT1G24440 AT1G24440
fragaria_vesca	FvH4_4g24910 FvH4_4g24910
malus_domestica	MD13G1107900.v1.1 MD16G1107800.v1.1
prunus_persica	Prupe.1G238500_v2.0.a1 Prupe.1G238500_v2.0.a1
pyrus_communis	pycom13g09330 pycom16g09200
rosa_chinensis	RchiOBHm_Chr4g0431971
rosa_laevigata	RLG00000006870
rosa_multiflora	Rmu_sc0004965.1_g000015
rosa_roxburghii	Rroxscaffold_5G00373410
rosa_rugosa	Rorug04G0253800
rosa_samantha	Rh4AG310900 Rh4BG318000 Rh4CG333400 Rh4DG313000
rosa_wichuraiana	Rw4G027050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	110
AccI	GTMKAC	2 cut(s)	237, 246
AciI	CCGC	3 cut(s)	108, 334, 547
AclWI	GGATC	1 cut(s)	374
AcsI	RAATTY	2 cut(s)	73, 217
AcuI	CTGAAG	1 cut(s)	314
AfaI	GTAC	1 cut(s)	746
AfiI	CCNNNNNNNGG	1 cut(s)	739
AgsI	TTSAA	2 cut(s)	273, 669
AjnI	CCWGG	1 cut(s)	30
AleI	CACNNNNGTG	1 cut(s)	500
AluBI	AGCT	2 cut(s)	83, 405
AluI	AGCT	2 cut(s)	83, 405
Alw21I	GWGCWC	1 cut(s)	630
Alw26I	GTCTC	2 cut(s)	330, 615
AlwI	GGATC	1 cut(s)	374
AlwNI	CAGNNNCTG	1 cut(s)	337
AoxI	GGCC	2 cut(s)	147, 260
ApeKI	GCWGC	3 cut(s)	83, 86, 337
ApoI	RAATTY	2 cut(s)	73, 217
AspA2I	CCTAGG	1 cut(s)	383
AspS9I	GGNCC	2 cut(s)	148, 261
AsuC2I	CCSGG	2 cut(s)	115, 725
AvrII	CCTAGG	1 cut(s)	383
BaeGI	GKGCMC	1 cut(s)	115
BanI	GGYRCC	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	630
BbvCI	CCTCAGC	1 cut(s)	450
BbvI	GCAGC	3 cut(s)	70, 73, 324
BccI	CCATC	3 cut(s)	248, 368, 425
BceAI	ACGGC	1 cut(s)	570
BciT130I	CCWGG	1 cut(s)	32
BcnI	CCSGG	2 cut(s)	115, 725
BcoDI	GTCTC	2 cut(s)	330, 615
BfaI	CTAG	2 cut(s)	80, 384
BisI	GCNGC	4 cut(s)	84, 87, 335, 338
BlnI	CCTAGG	1 cut(s)	383
BlsI	GCNGC	4 cut(s)	85, 88, 336, 339
Bme1390I	CCNGG	3 cut(s)	32, 115, 725
BmgT120I	GGNCC	2 cut(s)	148, 261
BmiI	GGNNCC	3 cut(s)	112, 150, 390
BmrFI	CCNGG	3 cut(s)	32, 115, 725
BmsI	GCATC	2 cut(s)	543, 718
Bpu10I	CCTNAGC	1 cut(s)	450
BpuEI	CTTGAG	2 cut(s)	61, 597
BpuMI	CCSGG	2 cut(s)	115, 725
BsaBI	GATNNNNATC	1 cut(s)	378
BsaJI	CCNNGG	2 cut(s)	383, 586
Bsc4I	CCNNNNNNNGG	1 cut(s)	739
Bse3DI	GCAATG	2 cut(s)	179, 534
Bse8I	GATNNNNATC	1 cut(s)	378
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	2 cut(s)	383, 586
BseGI	GGATG	2 cut(s)	379, 733
BseJI	GATNNNNATC	1 cut(s)	378
BseLI	CCNNNNNNNGG	1 cut(s)	739
BseMI	GCAATG	2 cut(s)	179, 534
BseMII	CTCAG	1 cut(s)	441
BseRI	GAGGAG	1 cut(s)	482
BseSI	GKGCMC	1 cut(s)	115
BseXI	GCAGC	3 cut(s)	70, 73, 324
BseYI	CCCAGC	2 cut(s)	263, 392
BsgI	GTGCAG	1 cut(s)	323
BshFI	GGCC	2 cut(s)	149, 262
BshNI	GGYRCC	1 cut(s)	110
BsiHKAI	GWGCWC	1 cut(s)	630
BsiSI	CCGG	2 cut(s)	115, 725
BslFI	GGGAC	1 cut(s)	314
BslI	CCNNNNNNNGG	1 cut(s)	739
BsmAI	GTCTC	2 cut(s)	330, 615
BsmBI	CGTCTC	1 cut(s)	330
BsmFI	GGGAC	1 cut(s)	314
BsnI	GGCC	2 cut(s)	149, 262
Bsp1286I	GDGCHC	2 cut(s)	115, 630
Bsp143I	GATC	1 cut(s)	379
BspACI	CCGC	3 cut(s)	108, 334, 547
BspANI	GGCC	2 cut(s)	149, 262
BspCNI	CTCAG	1 cut(s)	442
BspLI	GGNNCC	3 cut(s)	112, 150, 390
BspPI	GGATC	1 cut(s)	374
BspT107I	GGYRCC	1 cut(s)	110
BsrDI	GCAATG	2 cut(s)	179, 534
BssECI	CCNNGG	2 cut(s)	383, 586
BssMI	GATC	1 cut(s)	379
BssNAI	GTATAC	1 cut(s)	247
BssT1I	CCWWGG	1 cut(s)	383
Bst1107I	GTATAC	1 cut(s)	247
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	3 cut(s)	140, 324, 664
Bst6I	CTCTTC	3 cut(s)	333, 459, 740
BstAPI	GCANNNNNTGC	1 cut(s)	540
BstC8I	GCNNGC	4 cut(s)	69, 200, 260, 710
BstDEI	CTNAG	2 cut(s)	369, 450
BstDSI	CCRYGG	1 cut(s)	586
BstF5I	GGATG	2 cut(s)	379, 733
BstKTI	GATC	1 cut(s)	382
BstMAI	GTCTC	2 cut(s)	330, 615
BstMBI	GATC	1 cut(s)	379
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 264, 402, 540, 582
BstNI	CCWGG	1 cut(s)	32
BstNSI	RCATGY	1 cut(s)	71
BstSCI	CCNGG	3 cut(s)	30, 113, 723
BstSLI	GKGCMC	1 cut(s)	115
BstV1I	GCAGC	3 cut(s)	70, 73, 324
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
BstZ17I	GTATAC	1 cut(s)	247
BsuRI	GGCC	2 cut(s)	149, 262
BtgI	CCRYGG	1 cut(s)	586
BtsCI	GGATG	2 cut(s)	379, 733
Cac8I	GCNNGC	4 cut(s)	69, 200, 260, 710
CaiI	CAGNNNCTG	1 cut(s)	337
Cfr13I	GGNCC	2 cut(s)	148, 261
Csp6I	GTAC	1 cut(s)	745
CviAII	CATG	3 cut(s)	68, 278, 397
CviQI	GTAC	1 cut(s)	745
DdeI	CTNAG	2 cut(s)	369, 450
DpnI	GATC	1 cut(s)	381
DpnII	GATC	1 cut(s)	379
Eam1104I	CTCTTC	3 cut(s)	333, 459, 740
EarI	CTCTTC	3 cut(s)	333, 459, 740
Eco130I	CCWWGG	1 cut(s)	383
Eco57I	CTGAAG	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	30
EcoT14I	CCWWGG	1 cut(s)	383
ErhI	CCWWGG	1 cut(s)	383
Esp3I	CGTCTC	1 cut(s)	330
FaeI	CATG	3 cut(s)	71, 281, 400
FaqI	GGGAC	1 cut(s)	314
FatI	CATG	3 cut(s)	67, 277, 396
FblI	GTMKAC	2 cut(s)	237, 246
Fnu4HI	GCNGC	4 cut(s)	84, 87, 335, 338
FokI	GGATG	2 cut(s)	386, 740
Fsp4HI	GCNGC	4 cut(s)	84, 87, 335, 338
FspBI	CTAG	2 cut(s)	80, 384
GluI	GCNGC	4 cut(s)	84, 87, 335, 338
GsaI	CCCAGC	2 cut(s)	267, 396
HaeIII	GGCC	2 cut(s)	149, 262
HapII	CCGG	2 cut(s)	115, 725
Hin1II	CATG	3 cut(s)	71, 281, 400
HincII	GTYRAC	1 cut(s)	652
HindII	GTYRAC	1 cut(s)	652
HinfI	GANTC	3 cut(s)	35, 365, 569
HpaII	CCGG	2 cut(s)	115, 725
Hpy166II	GTNNAC	5 cut(s)	136, 238, 247, 652, 745
Hpy188I	TCNGA	3 cut(s)	96, 123, 568
Hpy188III	TCNNGA	2 cut(s)	408, 614
Hpy8I	GTNNAC	5 cut(s)	136, 238, 247, 652, 745
HpyAV	CCTTC	2 cut(s)	33, 280
HpyCH4III	ACNGT	3 cut(s)	140, 324, 664
HpyCH4V	TGCA	7 cut(s)	71, 89, 172, 340, 495, 534, 636
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 264, 402, 540, 582
HpyF3I	CTNAG	2 cut(s)	369, 450
Hsp92II	CATG	3 cut(s)	71, 281, 400
Kzo9I	GATC	1 cut(s)	379
LmnI	GCTCC	1 cut(s)	207
Lsp1109I	GCAGC	3 cut(s)	70, 73, 324
LweI	GCATC	2 cut(s)	543, 718
MaeI	CTAG	2 cut(s)	80, 384
MaeIII	GTNAC	2 cut(s)	140, 521
MalI	GATC	1 cut(s)	381
MboI	GATC	1 cut(s)	379
MboII	GAAGA	6 cut(s)	214, 320, 427, 476, 653, 727
MfeI	CAATTG	1 cut(s)	550
MflI	RGATCY	1 cut(s)	379
MhlI	GDGCHC	2 cut(s)	115, 630
MluCI	AATT	7 cut(s)	73, 90, 128, 217, 514, 550, 760
MlyI	GAGTC	2 cut(s)	44, 578
MmeI	TCCRAC	1 cut(s)	546
MnlI	CCTC	8 cut(s)	46, 92, 164, 445, 460, 667, 704, 743
MseI	TTAA	3 cut(s)	423, 606, 769
MslI	CAYNNNNRTG	1 cut(s)	500
MspA1I	CMGCKG	1 cut(s)	334
MspI	CCGG	2 cut(s)	115, 725
MspR9I	CCNGG	3 cut(s)	32, 115, 725
MunI	CAATTG	1 cut(s)	550
MvaI	CCWGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	5 cut(s)	53, 264, 402, 540, 582
NciI	CCSGG	2 cut(s)	115, 725
NdeII	GATC	1 cut(s)	379
NlaIII	CATG	3 cut(s)	71, 281, 400
NlaIV	GGNNCC	3 cut(s)	112, 150, 390
NmuCI	GTSAC	2 cut(s)	140, 521
NspI	RCATGY	1 cut(s)	71
OliI	CACNNNNGTG	1 cut(s)	500
PaeI	GCATGC	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	365
PkrI	GCNGC	4 cut(s)	85, 88, 336, 339
PleI	GAGTC	2 cut(s)	43, 577
PpsI	GAGTC	2 cut(s)	43, 577
Psp6I	CCWGG	1 cut(s)	30
PspFI	CCCAGC	2 cut(s)	263, 392
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	3 cut(s)	112, 150, 390
PspPI	GGNCC	2 cut(s)	148, 261
PstNI	CAGNNNCTG	1 cut(s)	337
PsuI	RGATCY	1 cut(s)	379
RsaI	GTAC	1 cut(s)	746
RsaNI	GTAC	1 cut(s)	745
RseI	CAYNNNNRTG	1 cut(s)	500
SaqAI	TTAA	3 cut(s)	423, 606, 769
SatI	GCNGC	4 cut(s)	84, 87, 335, 338
Sau3AI	GATC	1 cut(s)	379
Sau96I	GGNCC	2 cut(s)	148, 261
SchI	GAGTC	2 cut(s)	44, 578
ScrFI	CCNGG	3 cut(s)	32, 115, 725
SduI	GDGCHC	2 cut(s)	115, 630
SetI	ASST	5 cut(s)	85, 216, 246, 407, 696
SfaNI	GCATC	2 cut(s)	543, 718
SmiMI	CAYNNNNRTG	1 cut(s)	500
SmlI	CTYRAG	2 cut(s)	40, 612
SmoI	CTYRAG	2 cut(s)	40, 612
SphI	GCATGC	1 cut(s)	71
Sse9I	AATT	7 cut(s)	73, 90, 128, 217, 514, 550, 760
SsiI	CCGC	3 cut(s)	108, 334, 547
SspMI	CTAG	2 cut(s)	80, 384
StyD4I	CCNGG	3 cut(s)	30, 113, 723
StyI	CCWWGG	1 cut(s)	383
TaaI	ACNGT	3 cut(s)	140, 324, 664
TasI	AATT	7 cut(s)	73, 90, 128, 217, 514, 550, 760
TatI	WGTACW	1 cut(s)	744
TauI	GCSGC	1 cut(s)	337
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	3 cut(s)	423, 606, 769
Tru9I	TTAA	3 cut(s)	423, 606, 769
TseFI	GTSAC	2 cut(s)	140, 521
TseI	GCWGC	3 cut(s)	83, 86, 337
Tsp45I	GTSAC	2 cut(s)	140, 521
TspDTI	ATGAA	1 cut(s)	140
TspGWI	ACGGA	2 cut(s)	298, 301
XapI	RAATTY	2 cut(s)	73, 217
XceI	RCATGY	1 cut(s)	71
XmaJI	CCTAGG	1 cut(s)	383
XmiI	GTMKAC	2 cut(s)	237, 246
XspI	CTAG	2 cut(s)	80, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.