Zinc finger, C3HC4 type (RING finger)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G13195 AT1G13195 AT1G24440 AT1G24440 |
| fragaria_vesca | FvH4_4g24910 FvH4_4g24910 |
| malus_domestica | MD13G1107900.v1.1 MD16G1107800.v1.1 |
| prunus_persica | Prupe.1G238500_v2.0.a1 Prupe.1G238500_v2.0.a1 |
| pyrus_communis | pycom13g09330 pycom16g09200 |
| rosa_chinensis | RchiOBHm_Chr4g0431971 |
| rosa_laevigata | RLG00000006870 |
| rosa_multiflora | Rmu_sc0004965.1_g000015 |
| rosa_roxburghii | Rroxscaffold_5G00373410 |
| rosa_rugosa | Rorug04G0253800 |
| rosa_samantha | Rh4AG310900 Rh4BG318000 Rh4CG333400 Rh4DG313000 |
| rosa_wichuraiana | Rw4G027050 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 21 |
| AciI | CCGC | 1 cut(s) | 109 |
| AcsI | RAATTY | 1 cut(s) | 168 |
| AcuI | CTGAAG | 1 cut(s) | 89 |
| AfaI | GTAC | 1 cut(s) | 557 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 57 |
| AgsI | TTSAA | 2 cut(s) | 48, 471 |
| AluBI | AGCT | 1 cut(s) | 224 |
| AluI | AGCT | 1 cut(s) | 224 |
| Alw21I | GWGCWC | 2 cut(s) | 299, 432 |
| Alw26I | GTCTC | 1 cut(s) | 105 |
| Alw44I | GTGCAC | 1 cut(s) | 295 |
| AoxI | GGCC | 2 cut(s) | 35, 372 |
| ApaLI | GTGCAC | 1 cut(s) | 295 |
| ApoI | RAATTY | 1 cut(s) | 168 |
| BaeGI | GKGCMC | 1 cut(s) | 299 |
| BbsI | GAAGAC | 1 cut(s) | 423 |
| Bbv12I | GWGCWC | 2 cut(s) | 299, 432 |
| BbvCI | CCTCAGC | 1 cut(s) | 144 |
| BccI | CCATC | 1 cut(s) | 23 |
| BceAI | ACGGC | 1 cut(s) | 277 |
| BcoDI | GTCTC | 1 cut(s) | 105 |
| BfaI | CTAG | 1 cut(s) | 159 |
| BisI | GCNGC | 1 cut(s) | 110 |
| BlsI | GCNGC | 1 cut(s) | 111 |
| BmcAI | AGTACT | 1 cut(s) | 557 |
| BmsI | GCATC | 4 cut(s) | 130, 163, 345, 520 |
| BpiI | GAAGAC | 1 cut(s) | 423 |
| Bpu10I | CCTNAGC | 1 cut(s) | 144 |
| BsaJI | CCNNGG | 1 cut(s) | 52 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 467, 497 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 57 |
| Bse1I | ACTGG | 1 cut(s) | 359 |
| Bse3DI | GCAATG | 1 cut(s) | 253 |
| BseDI | CCNNGG | 1 cut(s) | 52 |
| BseGI | GGATG | 1 cut(s) | 154 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 57 |
| BseMI | GCAATG | 1 cut(s) | 253 |
| BseMII | CTCAG | 2 cut(s) | 135, 243 |
| BseNI | ACTGG | 1 cut(s) | 359 |
| BseRI | GAGGAG | 1 cut(s) | 284 |
| BseSI | GKGCMC | 1 cut(s) | 299 |
| BshFI | GGCC | 2 cut(s) | 37, 374 |
| BsiHKAI | GWGCWC | 2 cut(s) | 299, 432 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 57 |
| BsmAI | GTCTC | 1 cut(s) | 105 |
| BsmBI | CGTCTC | 1 cut(s) | 105 |
| BsnI | GGCC | 2 cut(s) | 37, 374 |
| Bsp1286I | GDGCHC | 2 cut(s) | 299, 432 |
| Bsp19I | CCATGG | 1 cut(s) | 52 |
| BspACI | CCGC | 1 cut(s) | 109 |
| BspANI | GGCC | 2 cut(s) | 37, 374 |
| BspCNI | CTCAG | 2 cut(s) | 136, 244 |
| BspHI | TCATGA | 1 cut(s) | 325 |
| BspQI | GCTCTTC | 1 cut(s) | 144 |
| BsrDI | GCAATG | 1 cut(s) | 253 |
| BsrI | ACTGG | 1 cut(s) | 359 |
| BssECI | CCNNGG | 1 cut(s) | 52 |
| BssNAI | GTATAC | 1 cut(s) | 22 |
| BssT1I | CCWWGG | 1 cut(s) | 52 |
| Bst1107I | GTATAC | 1 cut(s) | 22 |
| Bst4CI | ACNGT | 2 cut(s) | 99, 466 |
| Bst6I | CTCTTC | 3 cut(s) | 108, 144, 261 |
| BstC8I | GCNNGC | 2 cut(s) | 35, 512 |
| BstDEI | CTNAG | 3 cut(s) | 144, 252, 286 |
| BstDSI | CCRYGG | 1 cut(s) | 52 |
| BstF5I | GGATG | 1 cut(s) | 154 |
| BstMAI | GTCTC | 1 cut(s) | 105 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 221, 243 |
| BstSLI | GKGCMC | 1 cut(s) | 299 |
| BstV2I | GAAGAC | 1 cut(s) | 423 |
| BstZ17I | GTATAC | 1 cut(s) | 22 |
| BsuRI | GGCC | 2 cut(s) | 37, 374 |
| BtgI | CCRYGG | 1 cut(s) | 52 |
| BtsCI | GGATG | 1 cut(s) | 154 |
| BtsI | GCAGTG | 1 cut(s) | 217 |
| BtsIMutI | CAGTG | 2 cut(s) | 217, 456 |
| Cac8I | GCNNGC | 2 cut(s) | 35, 512 |
| CciI | TCATGA | 1 cut(s) | 325 |
| Csp6I | GTAC | 1 cut(s) | 556 |
| CviAII | CATG | 4 cut(s) | 53, 116, 163, 326 |
| CviJI | RGCY | 6 cut(s) | 37, 112, 224, 292, 374, 510 |
| CviKI_1 | RGCY | 6 cut(s) | 37, 112, 224, 292, 374, 510 |
| CviQI | GTAC | 1 cut(s) | 556 |
| DdeI | CTNAG | 3 cut(s) | 144, 252, 286 |
| Eam1104I | CTCTTC | 3 cut(s) | 108, 144, 261 |
| EarI | CTCTTC | 3 cut(s) | 108, 144, 261 |
| Eco130I | CCWWGG | 1 cut(s) | 52 |
| Eco147I | AGGCCT | 1 cut(s) | 374 |
| Eco57I | CTGAAG | 1 cut(s) | 89 |
| EcoT14I | CCWWGG | 1 cut(s) | 52 |
| ErhI | CCWWGG | 1 cut(s) | 52 |
| Esp3I | CGTCTC | 1 cut(s) | 105 |
| FaeI | CATG | 4 cut(s) | 56, 119, 166, 329 |
| FaiI | YATR | 9 cut(s) | 22, 54, 71, 117, 164, 327, 398, 424, 552 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 464, 496 |
| FatI | CATG | 4 cut(s) | 52, 115, 162, 325 |
| FblI | GTMKAC | 1 cut(s) | 21 |
| Fnu4HI | GCNGC | 1 cut(s) | 110 |
| FokI | GGATG | 1 cut(s) | 141 |
| Fsp4HI | GCNGC | 1 cut(s) | 110 |
| FspBI | CTAG | 1 cut(s) | 159 |
| GluI | GCNGC | 1 cut(s) | 110 |
| HaeIII | GGCC | 2 cut(s) | 37, 374 |
| Hin1II | CATG | 4 cut(s) | 56, 119, 166, 329 |
| HincII | GTYRAC | 1 cut(s) | 454 |
| HindII | GTYRAC | 1 cut(s) | 454 |
| HinfI | GANTC | 2 cut(s) | 13, 489 |
| Hpy166II | GTNNAC | 3 cut(s) | 22, 297, 454 |
| Hpy188I | TCNGA | 2 cut(s) | 370, 415 |
| Hpy188III | TCNNGA | 3 cut(s) | 174, 326, 527 |
| Hpy8I | GTNNAC | 3 cut(s) | 22, 297, 454 |
| HpyAV | CCTTC | 2 cut(s) | 51, 55 |
| HpyCH4III | ACNGT | 2 cut(s) | 99, 466 |
| HpyCH4IV | ACGT | 1 cut(s) | 447 |
| HpyCH4V | TGCA | 2 cut(s) | 297, 336 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 221, 243 |
| HpyF3I | CTNAG | 3 cut(s) | 144, 252, 286 |
| HpySE526I | ACGT | 1 cut(s) | 447 |
| Hsp92II | CATG | 4 cut(s) | 56, 119, 166, 329 |
| LguI | GCTCTTC | 1 cut(s) | 144 |
| LpnPI | CCDG | 7 cut(s) | 2, 19, 159, 340, 388, 524, 540 |
| LweI | GCATC | 4 cut(s) | 130, 163, 345, 520 |
| MaeI | CTAG | 1 cut(s) | 159 |
| MaeII | ACGT | 1 cut(s) | 447 |
| MaeIII | GTNAC | 1 cut(s) | 344 |
| MboII | GAAGA | 6 cut(s) | 95, 161, 193, 229, 278, 428 |
| MhlI | GDGCHC | 2 cut(s) | 299, 432 |
| MluCI | AATT | 4 cut(s) | 131, 168, 409, 562 |
| MmeI | TCCRAC | 2 cut(s) | 237, 348 |
| MnlI | CCTC | 5 cut(s) | 139, 262, 364, 469, 506 |
| MseI | TTAA | 1 cut(s) | 408 |
| MslI | CAYNNNNRTG | 1 cut(s) | 302 |
| MspA1I | CMGCKG | 1 cut(s) | 109 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 221, 243 |
| NcoI | CCATGG | 1 cut(s) | 52 |
| NlaIII | CATG | 4 cut(s) | 56, 119, 166, 329 |
| PagI | TCATGA | 1 cut(s) | 325 |
| PceI | AGGCCT | 1 cut(s) | 374 |
| PciSI | GCTCTTC | 1 cut(s) | 144 |
| PfeI | GAWTC | 2 cut(s) | 13, 489 |
| PkrI | GCNGC | 1 cut(s) | 111 |
| RsaI | GTAC | 1 cut(s) | 557 |
| RsaNI | GTAC | 1 cut(s) | 556 |
| RseI | CAYNNNNRTG | 1 cut(s) | 302 |
| SapI | GCTCTTC | 1 cut(s) | 144 |
| SaqAI | TTAA | 1 cut(s) | 408 |
| SatI | GCNGC | 1 cut(s) | 110 |
| ScaI | AGTACT | 1 cut(s) | 557 |
| SduI | GDGCHC | 2 cut(s) | 299, 432 |
| SetI | ASST | 4 cut(s) | 21, 226, 450, 498 |
| SfaNI | GCATC | 4 cut(s) | 130, 163, 345, 520 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 302 |
| Sse9I | AATT | 4 cut(s) | 131, 168, 409, 562 |
| SseBI | AGGCCT | 1 cut(s) | 374 |
| SsiI | CCGC | 1 cut(s) | 109 |
| SspMI | CTAG | 1 cut(s) | 159 |
| StuI | AGGCCT | 1 cut(s) | 374 |
| StyI | CCWWGG | 1 cut(s) | 52 |
| TaaI | ACNGT | 2 cut(s) | 99, 466 |
| TaiI | ACGT | 1 cut(s) | 450 |
| TasI | AATT | 4 cut(s) | 131, 168, 409, 562 |
| TatI | WGTACW | 1 cut(s) | 555 |
| TauI | GCSGC | 1 cut(s) | 112 |
| TfiI | GAWTC | 2 cut(s) | 13, 489 |
| Tru1I | TTAA | 1 cut(s) | 408 |
| Tru9I | TTAA | 1 cut(s) | 408 |
| TscAI | CASTG | 2 cut(s) | 217, 463 |
| TspDTI | ATGAA | 3 cut(s) | 104, 179, 342 |
| TspRI | CASTG | 2 cut(s) | 217, 463 |
| VneI | GTGCAC | 1 cut(s) | 295 |
| XapI | RAATTY | 1 cut(s) | 168 |
| XmiI | GTMKAC | 1 cut(s) | 21 |
| XspI | CTAG | 1 cut(s) | 159 |
| ZrmI | AGTACT | 1 cut(s) | 557 |