Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004965.1

Orthogroup ID

OG0009146

Physical Location & Seq

Genomic Coordinates Forward (+)

81794 .. 83751

Gene Structure 1958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004965.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

atgatatattaccagtcttcttgccaggagtctttgaatgttatagaggctgatgtacagcatgccaattctctagctgctgcaattccaagggccaagggtggtgttcattttcaaatgaaattggtttacaatcattgggctcccctcttcctgttattgttacagtggattgattcctcttgcacttgtctacttccaagatatctaaatttcttccatatacttgtctacaaggtatacacagatggcaggccgaacatttcaacccatggaaggaaggcaactataagggatttctattctgttatcttaccttctcttcagcggcttcatggggattttggggaattagatgatgctgaggaagagcatcctagcatgaaaatttctggaaagaagataactaaaggagatagtagtcttggaagtgcaaagatagctaaaggagatagcagtcttggcaatgctgagttggagagagaagaggagtgtgggatttgcttagagccgtgcaccaaaatggtcttgcctaactgctgtcatgaaatgtgcatcaaatgttaccgaaactggaacagaaagtcggaggcctgtcctttctgtcgtggtaatataaagagagtaaattcagaagacttatgggtgctcacttgtaatgatgacgttgttgacactgaaacggtttcaagggaggacttgttgcgattctacctctacatcaacagcctgccaaaagactatccagatgctcttttcttggtgtattatgagtactctaatttgatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-RING_2

Protein Analysis

263

Amino Acids

30.09

Weight (kDa)

5.77

Isoelectric Point (pI)

51.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13195 AT1G13195 AT1G24440 AT1G24440
fragaria_vesca	FvH4_4g24910 FvH4_4g24910
malus_domestica	MD13G1107900.v1.1 MD16G1107800.v1.1
prunus_persica	Prupe.1G238500_v2.0.a1 Prupe.1G238500_v2.0.a1
pyrus_communis	pycom13g09330 pycom16g09200
rosa_chinensis	RchiOBHm_Chr4g0431971
rosa_laevigata	RLG00000006870
rosa_multiflora	Rmu_sc0004965.1_g000015
rosa_roxburghii	Rroxscaffold_5G00373410
rosa_rugosa	Rorug04G0253800
rosa_samantha	Rh4AG310900 Rh4BG318000 Rh4CG333400 Rh4DG313000
rosa_wichuraiana	Rw4G027050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	193, 231, 240
AciI	CCGC	1 cut(s)	328
AcsI	RAATTY	3 cut(s)	211, 387, 628
AcuI	CTGAAG	1 cut(s)	308
AfaI	GTAC	2 cut(s)	57, 776
AfiI	CCNNNNNNNGG	1 cut(s)	276
AgsI	TTSAA	4 cut(s)	37, 116, 267, 690
AjnI	CCWGG	1 cut(s)	24
AluBI	AGCT	2 cut(s)	77, 443
AluI	AGCT	2 cut(s)	77, 443
Alw21I	GWGCWC	2 cut(s)	518, 651
Alw44I	GTGCAC	1 cut(s)	514
AoxI	GGCC	3 cut(s)	93, 254, 591
ApaLI	GTGCAC	1 cut(s)	514
ApeKI	GCWGC	2 cut(s)	77, 80
ApoI	RAATTY	3 cut(s)	211, 387, 628
AspS9I	GGNCC	1 cut(s)	93
BaeGI	GKGCMC	1 cut(s)	518
BanII	GRGCYC	1 cut(s)	145
BbsI	GAAGAC	2 cut(s)	9, 642
Bbv12I	GWGCWC	2 cut(s)	518, 651
BbvCI	CCTCAGC	1 cut(s)	363
BbvI	GCAGC	2 cut(s)	64, 67
BccI	CCATC	1 cut(s)	242
BceAI	ACGGC	1 cut(s)	496
BciT130I	CCWGG	1 cut(s)	26
BfaI	CTAG	2 cut(s)	74, 378
BisI	GCNGC	3 cut(s)	78, 81, 329
BlsI	GCNGC	3 cut(s)	79, 82, 330
BmcAI	AGTACT	1 cut(s)	776
Bme1390I	CCNGG	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	93
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	1 cut(s)	26
BmsI	GCATC	4 cut(s)	349, 382, 564, 739
BpiI	GAAGAC	2 cut(s)	9, 642
Bpu10I	CCTNAGC	1 cut(s)	363
BsaJI	CCNNGG	3 cut(s)	89, 96, 271
BsaXI	ACNNNNNCTCC	2 cut(s)	686, 716
Bsc4I	CCNNNNNNNGG	1 cut(s)	276
Bse1I	ACTGG	2 cut(s)	13, 578
Bse3DI	GCAATG	1 cut(s)	472
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	3 cut(s)	89, 96, 271
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	1 cut(s)	276
BseMI	GCAATG	1 cut(s)	472
BseMII	CTCAG	2 cut(s)	354, 462
BseNI	ACTGG	2 cut(s)	13, 578
BseRI	GAGGAG	1 cut(s)	503
BseSI	GKGCMC	1 cut(s)	518
BseXI	GCAGC	2 cut(s)	64, 67
BshFI	GGCC	3 cut(s)	95, 256, 593
BsiHKAI	GWGCWC	2 cut(s)	518, 651
BslI	CCNNNNNNNGG	1 cut(s)	276
BsnI	GGCC	3 cut(s)	95, 256, 593
Bsp1286I	GDGCHC	3 cut(s)	145, 518, 651
Bsp1407I	TGTACA	1 cut(s)	55
Bsp19I	CCATGG	1 cut(s)	271
BspACI	CCGC	1 cut(s)	328
BspANI	GGCC	3 cut(s)	95, 256, 593
BspCNI	CTCAG	2 cut(s)	355, 463
BspHI	TCATGA	1 cut(s)	544
BspLI	GGNNCC	1 cut(s)	144
BspQI	GCTCTTC	1 cut(s)	363
BsrDI	GCAATG	1 cut(s)	472
BsrGI	TGTACA	1 cut(s)	55
BsrI	ACTGG	2 cut(s)	13, 578
BssECI	CCNNGG	3 cut(s)	89, 96, 271
BssNAI	GTATAC	1 cut(s)	241
BssT1I	CCWWGG	3 cut(s)	89, 96, 271
Bst1107I	GTATAC	1 cut(s)	241
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	2 cut(s)	168, 685
Bst6I	CTCTTC	4 cut(s)	155, 327, 363, 480
BstAUI	TGTACA	1 cut(s)	55
BstC8I	GCNNGC	3 cut(s)	63, 254, 731
BstDEI	CTNAG	3 cut(s)	363, 471, 505
BstDSI	CCRYGG	1 cut(s)	271
BstF5I	GGATG	1 cut(s)	373
BstMWI	GCNNNNNNNGC	2 cut(s)	440, 462
BstNI	CCWGG	1 cut(s)	26
BstNSI	RCATGY	1 cut(s)	65
BstSCI	CCNGG	1 cut(s)	24
BstSLI	GKGCMC	1 cut(s)	518
BstV1I	GCAGC	2 cut(s)	64, 67
BstV2I	GAAGAC	2 cut(s)	9, 642
BstZ17I	GTATAC	1 cut(s)	241
BsuRI	GGCC	3 cut(s)	95, 256, 593
BtgI	CCRYGG	1 cut(s)	271
BtsCI	GGATG	1 cut(s)	373
BtsIMutI	CAGTG	2 cut(s)	173, 675
Cac8I	GCNNGC	3 cut(s)	63, 254, 731
CciI	TCATGA	1 cut(s)	544
Cfr13I	GGNCC	1 cut(s)	93
Csp6I	GTAC	2 cut(s)	56, 775
CviAII	CATG	5 cut(s)	62, 272, 335, 382, 545
CviQI	GTAC	2 cut(s)	56, 775
DdeI	CTNAG	3 cut(s)	363, 471, 505
Eam1104I	CTCTTC	4 cut(s)	155, 327, 363, 480
EarI	CTCTTC	4 cut(s)	155, 327, 363, 480
Eco130I	CCWWGG	3 cut(s)	89, 96, 271
Eco147I	AGGCCT	1 cut(s)	593
Eco24I	GRGCYC	1 cut(s)	145
Eco32I	GATATC	1 cut(s)	206
Eco57I	CTGAAG	1 cut(s)	308
EcoRII	CCWGG	1 cut(s)	24
EcoRV	GATATC	1 cut(s)	206
EcoT14I	CCWWGG	3 cut(s)	89, 96, 271
EcoT38I	GRGCYC	1 cut(s)	145
ErhI	CCWWGG	3 cut(s)	89, 96, 271
FaeI	CATG	5 cut(s)	65, 275, 338, 385, 548
FatI	CATG	5 cut(s)	61, 271, 334, 381, 544
FblI	GTMKAC	3 cut(s)	193, 231, 240
Fnu4HI	GCNGC	3 cut(s)	78, 81, 329
FokI	GGATG	1 cut(s)	360
FriOI	GRGCYC	1 cut(s)	145
Fsp4HI	GCNGC	3 cut(s)	78, 81, 329
FspBI	CTAG	2 cut(s)	74, 378
GluI	GCNGC	3 cut(s)	78, 81, 329
HaeIII	GGCC	3 cut(s)	95, 256, 593
Hin1II	CATG	5 cut(s)	65, 275, 338, 385, 548
HincII	GTYRAC	1 cut(s)	673
HindII	GTYRAC	1 cut(s)	673
HinfI	GANTC	3 cut(s)	29, 176, 708
Hpy166II	GTNNAC	6 cut(s)	130, 194, 232, 241, 516, 673
Hpy188I	TCNGA	2 cut(s)	589, 634
Hpy188III	TCNNGA	3 cut(s)	393, 545, 746
Hpy8I	GTNNAC	6 cut(s)	130, 194, 232, 241, 516, 673
HpyAV	CCTTC	3 cut(s)	270, 274, 327
HpyCH4III	ACNGT	2 cut(s)	168, 685
HpyCH4IV	ACGT	1 cut(s)	666
HpyCH4V	TGCA	5 cut(s)	83, 186, 434, 516, 555
HpyF10VI	GCNNNNNNNGC	2 cut(s)	440, 462
HpyF3I	CTNAG	3 cut(s)	363, 471, 505
HpySE526I	ACGT	1 cut(s)	666
Hsp92II	CATG	5 cut(s)	65, 275, 338, 385, 548
LguI	GCTCTTC	1 cut(s)	363
LmnI	GCTCC	1 cut(s)	148
Lsp1109I	GCAGC	2 cut(s)	64, 67
LweI	GCATC	4 cut(s)	349, 382, 564, 739
MaeI	CTAG	2 cut(s)	74, 378
MaeII	ACGT	1 cut(s)	666
MaeIII	GTNAC	2 cut(s)	162, 563
MboII	GAAGA	8 cut(s)	9, 142, 208, 314, 380, 412, 497, 647
MhlI	GDGCHC	3 cut(s)	145, 518, 651
MluCI	AATT	8 cut(s)	67, 84, 122, 211, 350, 387, 628, 781
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	2 cut(s)	456, 567
MnlI	CCTC	8 cut(s)	40, 158, 190, 358, 481, 583, 688, 725
MslI	CAYNNNNRTG	1 cut(s)	521
MspA1I	CMGCKG	1 cut(s)	328
MspR9I	CCNGG	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	2 cut(s)	440, 462
NcoI	CCATGG	1 cut(s)	271
NlaIII	CATG	5 cut(s)	65, 275, 338, 385, 548
NlaIV	GGNNCC	1 cut(s)	144
NspI	RCATGY	1 cut(s)	65
PaeI	GCATGC	1 cut(s)	65
PagI	TCATGA	1 cut(s)	544
PceI	AGGCCT	1 cut(s)	593
PciSI	GCTCTTC	1 cut(s)	363
PfeI	GAWTC	2 cut(s)	176, 708
PkrI	GCNGC	3 cut(s)	79, 82, 330
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	1 cut(s)	144
PspPI	GGNCC	1 cut(s)	93
RsaI	GTAC	2 cut(s)	57, 776
RsaNI	GTAC	2 cut(s)	56, 775
RseI	CAYNNNNRTG	1 cut(s)	521
SapI	GCTCTTC	1 cut(s)	363
SatI	GCNGC	3 cut(s)	78, 81, 329
Sau96I	GGNCC	1 cut(s)	93
ScaI	AGTACT	1 cut(s)	776
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	3 cut(s)	145, 518, 651
SetI	ASST	6 cut(s)	79, 240, 319, 445, 669, 717
SfaNI	GCATC	4 cut(s)	349, 382, 564, 739
SmiMI	CAYNNNNRTG	1 cut(s)	521
SphI	GCATGC	1 cut(s)	65
Sse9I	AATT	8 cut(s)	67, 84, 122, 211, 350, 387, 628, 781
SseBI	AGGCCT	1 cut(s)	593
SsiI	CCGC	1 cut(s)	328
SspMI	CTAG	2 cut(s)	74, 378
StuI	AGGCCT	1 cut(s)	593
StyD4I	CCNGG	1 cut(s)	24
StyI	CCWWGG	3 cut(s)	89, 96, 271
TaaI	ACNGT	2 cut(s)	168, 685
TaiI	ACGT	1 cut(s)	669
TasI	AATT	8 cut(s)	67, 84, 122, 211, 350, 387, 628, 781
TatI	WGTACW	2 cut(s)	55, 774
TauI	GCSGC	1 cut(s)	331
TfiI	GAWTC	2 cut(s)	176, 708
TscAI	CASTG	2 cut(s)	173, 682
TseI	GCWGC	2 cut(s)	77, 80
TspDTI	ATGAA	5 cut(s)	98, 134, 323, 398, 561
TspRI	CASTG	2 cut(s)	173, 682
VneI	GTGCAC	1 cut(s)	514
XapI	RAATTY	3 cut(s)	211, 387, 628
XceI	RCATGY	1 cut(s)	65
XmiI	GTMKAC	3 cut(s)	193, 231, 240
XspI	CTAG	2 cut(s)	74, 378
ZrmI	AGTACT	1 cut(s)	776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.