Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0009146

Physical Location & Seq

Genomic Coordinates Forward (+)

54641792 .. 54644031

Gene Structure 2240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00373410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGAGATGATATATTACCAGTCTTCTTACCAGGAGTCTTTGAATGTTATAGAGGCTGATGTACAGCATGCCAATTCTCTAGCTGCTGCAATTCCAAGAGCCAAGGGTGGTGTTCGTTTTGAAATGAAACTGGTGTACAATCATTGGGCTCCCCTCTTCCTGTTCTTGTTACAGTGGATTGATTCCTCTTGCACTTGTCTACTTCCAAGATATCTAAATTTCTTCCATATACTTGTCTACAAGGTATACACAGATGGCAGGCCGAACATTTCAACCCATGGGAGGAAGGCAACTATAAGGGATTTCTATTCTGTTATCTTACCTTCTCTTCAGCGGCTTCATGGGGATTTTGGGGAATTAGATGATGCTGAGGAAGAGCATCCAAGCAAGAAAATTTCTGGAAAGAAGATAACTAAAGGAGATAGTAGTCGTGGCAGTGCGAAGATAGCTAAAGGAGATAGCAGTCTTGGCAATGCTGAGTTGGAGAGAGAAGAGGAGTGTGGGATTTGCTTAGAGCCGTGCACCAAAATGGTCTTGCCTAACTGCTGTCATGAAATGTGCATCAAATGTTACCGAAACTGGAACAGAAAGTCGGAGGCCTGTCCTTTCTGTCGTGGTAATATAAAGAGAGTTAATTCAGAAGACTTATGGGTGCTCACTTGTAATGATGACGTTGTTGACACTGAAACGGTTTCAAGGGAGGACTTGTTGCGATTCTACCTCTACATCAACAGCCTGCCAAAAGACTATCCAGATGCTCTTTTCTTGGTGTATTATGAGTACTCTAATTTGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-RING_2

Protein Analysis

265

Amino Acids

30.5

Weight (kDa)

5.84

Isoelectric Point (pI)

51.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	164 - 211	6.9e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	166 - 205	8.3e-06	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13195 AT1G13195 AT1G24440 AT1G24440
fragaria_vesca	FvH4_4g24910 FvH4_4g24910
malus_domestica	MD13G1107900.v1.1 MD16G1107800.v1.1
prunus_persica	Prupe.1G238500_v2.0.a1 Prupe.1G238500_v2.0.a1
pyrus_communis	pycom13g09330 pycom16g09200
rosa_chinensis	RchiOBHm_Chr4g0431971
rosa_laevigata	RLG00000006870
rosa_multiflora	Rmu_sc0004965.1_g000015
rosa_roxburghii	Rroxscaffold_5G00373410
rosa_rugosa	Rorug04G0253800
rosa_samantha	Rh4AG310900 Rh4BG318000 Rh4CG333400 Rh4DG313000
rosa_wichuraiana	Rw4G027050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	199, 237, 246
AciI	CCGC	1 cut(s)	334
AcsI	RAATTY	2 cut(s)	217, 393
AcuI	CTGAAG	1 cut(s)	314
AfaI	GTAC	3 cut(s)	63, 137, 782
AfiI	CCNNNNNNNGG	1 cut(s)	282
AgsI	TTSAA	4 cut(s)	43, 122, 273, 696
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	2 cut(s)	83, 449
AluI	AGCT	2 cut(s)	83, 449
Alw21I	GWGCWC	2 cut(s)	524, 657
Alw44I	GTGCAC	1 cut(s)	520
AoxI	GGCC	2 cut(s)	260, 597
ApaLI	GTGCAC	1 cut(s)	520
ApeKI	GCWGC	2 cut(s)	83, 86
ApoI	RAATTY	2 cut(s)	217, 393
BaeGI	GKGCMC	1 cut(s)	524
BanII	GRGCYC	1 cut(s)	151
BbsI	GAAGAC	2 cut(s)	15, 648
Bbv12I	GWGCWC	2 cut(s)	524, 657
BbvCI	CCTCAGC	1 cut(s)	369
BbvI	GCAGC	2 cut(s)	70, 73
BccI	CCATC	1 cut(s)	248
BceAI	ACGGC	1 cut(s)	502
BciT130I	CCWGG	1 cut(s)	32
BfaI	CTAG	1 cut(s)	80
BisI	GCNGC	3 cut(s)	84, 87, 335
BlsI	GCNGC	3 cut(s)	85, 88, 336
BmcAI	AGTACT	1 cut(s)	782
Bme1390I	CCNGG	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	150
BmrFI	CCNGG	1 cut(s)	32
BmsI	GCATC	4 cut(s)	355, 388, 570, 745
BpiI	GAAGAC	2 cut(s)	15, 648
Bpu10I	CCTNAGC	1 cut(s)	369
BsaJI	CCNNGG	2 cut(s)	102, 277
BsaXI	ACNNNNNCTCC	2 cut(s)	692, 722
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
Bse1I	ACTGG	3 cut(s)	19, 135, 584
Bse3DI	GCAATG	1 cut(s)	478
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	2 cut(s)	102, 277
BseGI	GGATG	1 cut(s)	379
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseMI	GCAATG	1 cut(s)	478
BseMII	CTCAG	2 cut(s)	360, 468
BseNI	ACTGG	3 cut(s)	19, 135, 584
BseRI	GAGGAG	1 cut(s)	509
BseSI	GKGCMC	1 cut(s)	524
BseXI	GCAGC	2 cut(s)	70, 73
BshFI	GGCC	2 cut(s)	262, 599
BsiHKAI	GWGCWC	2 cut(s)	524, 657
BslI	CCNNNNNNNGG	1 cut(s)	282
BsnI	GGCC	2 cut(s)	262, 599
Bsp1286I	GDGCHC	3 cut(s)	151, 524, 657
Bsp1407I	TGTACA	2 cut(s)	61, 135
Bsp19I	CCATGG	1 cut(s)	277
BspACI	CCGC	1 cut(s)	334
BspANI	GGCC	2 cut(s)	262, 599
BspCNI	CTCAG	2 cut(s)	361, 469
BspHI	TCATGA	1 cut(s)	550
BspLI	GGNNCC	1 cut(s)	150
BspQI	GCTCTTC	1 cut(s)	369
BsrDI	GCAATG	1 cut(s)	478
BsrGI	TGTACA	2 cut(s)	61, 135
BsrI	ACTGG	3 cut(s)	19, 135, 584
BssECI	CCNNGG	2 cut(s)	102, 277
BssNAI	GTATAC	1 cut(s)	247
BssT1I	CCWWGG	2 cut(s)	102, 277
Bst1107I	GTATAC	1 cut(s)	247
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	2 cut(s)	174, 691
Bst6I	CTCTTC	4 cut(s)	161, 333, 369, 486
BstAUI	TGTACA	2 cut(s)	61, 135
BstC8I	GCNNGC	3 cut(s)	69, 260, 737
BstDEI	CTNAG	3 cut(s)	369, 477, 511
BstDSI	CCRYGG	1 cut(s)	277
BstF5I	GGATG	1 cut(s)	379
BstMWI	GCNNNNNNNGC	2 cut(s)	446, 468
BstNI	CCWGG	1 cut(s)	32
BstNSI	RCATGY	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	30
BstSLI	GKGCMC	1 cut(s)	524
BstV1I	GCAGC	2 cut(s)	70, 73
BstV2I	GAAGAC	2 cut(s)	15, 648
BstZ17I	GTATAC	1 cut(s)	247
BsuRI	GGCC	2 cut(s)	262, 599
BtgI	CCRYGG	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	379
BtsI	GCAGTG	1 cut(s)	442
BtsIMutI	CAGTG	3 cut(s)	179, 442, 681
Cac8I	GCNNGC	3 cut(s)	69, 260, 737
CciI	TCATGA	1 cut(s)	550
Csp6I	GTAC	3 cut(s)	62, 136, 781
CviAII	CATG	4 cut(s)	68, 278, 341, 551
CviQI	GTAC	3 cut(s)	62, 136, 781
DdeI	CTNAG	3 cut(s)	369, 477, 511
Eam1104I	CTCTTC	4 cut(s)	161, 333, 369, 486
EarI	CTCTTC	4 cut(s)	161, 333, 369, 486
Eco130I	CCWWGG	2 cut(s)	102, 277
Eco147I	AGGCCT	1 cut(s)	599
Eco24I	GRGCYC	1 cut(s)	151
Eco32I	GATATC	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	30
EcoRV	GATATC	1 cut(s)	212
EcoT14I	CCWWGG	2 cut(s)	102, 277
EcoT38I	GRGCYC	1 cut(s)	151
ErhI	CCWWGG	2 cut(s)	102, 277
FaeI	CATG	4 cut(s)	71, 281, 344, 554
FatI	CATG	4 cut(s)	67, 277, 340, 550
FblI	GTMKAC	3 cut(s)	199, 237, 246
Fnu4HI	GCNGC	3 cut(s)	84, 87, 335
FokI	GGATG	1 cut(s)	366
FriOI	GRGCYC	1 cut(s)	151
Fsp4HI	GCNGC	3 cut(s)	84, 87, 335
FspBI	CTAG	1 cut(s)	80
GluI	GCNGC	3 cut(s)	84, 87, 335
HaeIII	GGCC	2 cut(s)	262, 599
Hin1II	CATG	4 cut(s)	71, 281, 344, 554
HincII	GTYRAC	1 cut(s)	679
HindII	GTYRAC	1 cut(s)	679
HinfI	GANTC	3 cut(s)	35, 182, 714
Hpy166II	GTNNAC	6 cut(s)	136, 200, 238, 247, 522, 679
Hpy188I	TCNGA	2 cut(s)	595, 640
Hpy188III	TCNNGA	3 cut(s)	399, 551, 752
Hpy8I	GTNNAC	6 cut(s)	136, 200, 238, 247, 522, 679
HpyAV	CCTTC	2 cut(s)	280, 333
HpyCH4III	ACNGT	2 cut(s)	174, 691
HpyCH4IV	ACGT	1 cut(s)	672
HpyCH4V	TGCA	4 cut(s)	89, 192, 522, 561
HpyF10VI	GCNNNNNNNGC	2 cut(s)	446, 468
HpyF3I	CTNAG	3 cut(s)	369, 477, 511
HpySE526I	ACGT	1 cut(s)	672
Hsp92II	CATG	4 cut(s)	71, 281, 344, 554
LguI	GCTCTTC	1 cut(s)	369
LmnI	GCTCC	1 cut(s)	154
Lsp1109I	GCAGC	2 cut(s)	70, 73
LweI	GCATC	4 cut(s)	355, 388, 570, 745
MaeI	CTAG	1 cut(s)	80
MaeII	ACGT	1 cut(s)	672
MaeIII	GTNAC	2 cut(s)	168, 569
MboII	GAAGA	9 cut(s)	15, 148, 214, 320, 386, 418, 454, 503, 653
MhlI	GDGCHC	3 cut(s)	151, 524, 657
MluCI	AATT	7 cut(s)	73, 90, 217, 356, 393, 634, 787
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	2 cut(s)	462, 573
MnlI	CCTC	9 cut(s)	46, 164, 196, 276, 364, 487, 589, 694, 731
MseI	TTAA	1 cut(s)	633
MslI	CAYNNNNRTG	1 cut(s)	527
MspA1I	CMGCKG	1 cut(s)	334
MspR9I	CCNGG	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	2 cut(s)	446, 468
NcoI	CCATGG	1 cut(s)	277
NlaIII	CATG	4 cut(s)	71, 281, 344, 554
NlaIV	GGNNCC	1 cut(s)	150
NspI	RCATGY	1 cut(s)	71
PaeI	GCATGC	1 cut(s)	71
PagI	TCATGA	1 cut(s)	550
PceI	AGGCCT	1 cut(s)	599
PciSI	GCTCTTC	1 cut(s)	369
PfeI	GAWTC	2 cut(s)	182, 714
PkrI	GCNGC	3 cut(s)	85, 88, 336
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	150
RsaI	GTAC	3 cut(s)	63, 137, 782
RsaNI	GTAC	3 cut(s)	62, 136, 781
RseI	CAYNNNNRTG	1 cut(s)	527
SapI	GCTCTTC	1 cut(s)	369
SaqAI	TTAA	1 cut(s)	633
SatI	GCNGC	3 cut(s)	84, 87, 335
ScaI	AGTACT	1 cut(s)	782
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	1 cut(s)	32
SduI	GDGCHC	3 cut(s)	151, 524, 657
SetI	ASST	6 cut(s)	85, 246, 325, 451, 675, 723
SfaNI	GCATC	4 cut(s)	355, 388, 570, 745
SmiMI	CAYNNNNRTG	1 cut(s)	527
SphI	GCATGC	1 cut(s)	71
Sse9I	AATT	7 cut(s)	73, 90, 217, 356, 393, 634, 787
SseBI	AGGCCT	1 cut(s)	599
SsiI	CCGC	1 cut(s)	334
SspMI	CTAG	1 cut(s)	80
StuI	AGGCCT	1 cut(s)	599
StyD4I	CCNGG	1 cut(s)	30
StyI	CCWWGG	2 cut(s)	102, 277
TaaI	ACNGT	2 cut(s)	174, 691
TaiI	ACGT	1 cut(s)	675
TasI	AATT	7 cut(s)	73, 90, 217, 356, 393, 634, 787
TatI	WGTACW	3 cut(s)	61, 135, 780
TauI	GCSGC	1 cut(s)	337
TfiI	GAWTC	2 cut(s)	182, 714
Tru1I	TTAA	1 cut(s)	633
Tru9I	TTAA	1 cut(s)	633
TscAI	CASTG	3 cut(s)	179, 442, 688
TseI	GCWGC	2 cut(s)	83, 86
TspDTI	ATGAA	3 cut(s)	140, 329, 567
TspRI	CASTG	3 cut(s)	179, 442, 688
VneI	GTGCAC	1 cut(s)	520
XapI	RAATTY	2 cut(s)	217, 393
XceI	RCATGY	1 cut(s)	71
XmiI	GTMKAC	3 cut(s)	199, 237, 246
XspI	CTAG	1 cut(s)	80
ZrmI	AGTACT	1 cut(s)	782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.