AT1G13310

BRO1-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013447
Physical Location & Seq
Reverse (-)
4561028 .. 4563160
2133 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G13310.1

Sequence Viewer

Length: 1125 bp
ATGACGATGATGCAGTACCTAATTCCAGAACCAAAAACAAAAGAGATTTTGTACGAGAAAACGTTACAAGCTGCTGGTCCAATTACTCTAGGAGAAGTTAAAGAGTTAACTTCTAAGCGTAAAATTATCGAAGAATCTGTAAACAAAACCAGCAAAGTCATTGATTCAACTACAAGAGAGATGACCAGAGGACTAACTTCTGCTTGTGAGCAGGATCTTCATAAACTTGGAGAATACCTTCCATTACTCTTTAACTTGGTGCATTACACTGATAAGATTAAACGGGTTTCGAATCTTAAGATAAGATGGAGTAGTGGTTTGATCTCTCAGACCTTGATTCAGCGTACATGTCCGAAATTCTTCCAAGTCGATAACATAATGTTCGAGTTTGGAATGGTTCTTTTCATTTACGCGGTTAAGCTCCGCGAGAGAGCAATGGAACTAGTATCCACAGATTCTAAGAAAGCGGTAGCAGTTTACCGAGAAGCATCTGGAGTTTTCCATCATCTGTCTCATGAGATTCTTCCTTTATTACAAACTTGTCTGCCTCCAGGGAAGCTTCCGGAACTAACTCCTCCGCTTTGCTCTGCTTTGAGTCTCCTCTGTTTAGCTGAAGGTCAGGCTGTAACTACAGAGAAGGCTGAAGAAAGCGGCAAAAGTGCAAGCCTTTTGTCGAAACTGCACTTTGGAATTTTTCAATTTCTTTCTGAAGCCTATGCTCTTTTGTCATCTAGACTAACAGGAGAATATAAAGACCTATCGACCCGCTTTCTCGAGTATGTAACAACAATGGGAGCTTTACACGAACTAAAGAGCCAAAAATACTTAGCGGAATTGCTAGAATCCGAAGATCGAGTAGGCGATGCGGTAGGGGTTCTCCGGCGTGCCTTAGCAGCGGCGAAGAAGAGTACGCCGTCCAAAGATGACAAGTGGATAGCAATATTCAAGAAGGAGAGAGAGGATGTAGCTAAAAACATGGCTAAGTATGAGAAGCTAAACGATTCTATGATGTTACAGAAGATTCCAATTGATAGAGAGATACCTTTTCCAAAAGGTGAGAAGATTGTTAATCTCATTCCTTATACTCCCACAAGAGTGGTACGAGAACTTCGATTTAAGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRO1

Protein Analysis

374

Amino Acids

42.38

Weight (kDa)

9.09

Isoelectric Point (pI)

35.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRO1 PF03097 47 - 361 2.4e-25 BRO1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013447)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13310
fragaria_vesca FvH4_4g27970
malus_domestica MD13G1045500.v1.1
prunus_persica Prupe.1G306500_v2.0.a1
pyrus_communis pycom13g04000
rosa_chinensis RchiOBHm_Chr4g0435681
rosa_laevigata RLG00000006567
rosa_multiflora Rmu_sc0000051.1_g000013
rosa_roxburghii Rroxscaffold_5G00376890
rosa_rugosa Rorug04G0288200 Rorug04G0288300 Rorug04G0288400 Rorug04G0288500
rosa_samantha Rh4AG343100 Rh4BG351500 Rh4CG366100 Rh4DG345700
rosa_wichuraiana Rw4G029950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 413, 426
AccIII TCCGGA 1 cut(s) 562
AciI CCGC 9 cut(s) 413, 424, 467, 578, 651, 766, 830, 866, 896
AclI AACGTT 1 cut(s) 62
AclWI GGATC 1 cut(s) 222
AcsI RAATTY 2 cut(s) 356, 690
AcuI CTGAAG 3 cut(s) 633, 663, 729
AfaI GTAC 5 cut(s) 17, 53, 346, 910, 1101
AflII CTTAAG 1 cut(s) 296
AflIII ACRYGT 1 cut(s) 347
AgsI TTSAA 3 cut(s) 168, 698, 946
AhlI ACTAGT 1 cut(s) 442
AjnI CCWGG 1 cut(s) 550
AleI CACNNNNGTG 1 cut(s) 1094
AluBI AGCT 7 cut(s) 71, 421, 559, 611, 797, 968, 994
AluI AGCT 7 cut(s) 71, 421, 559, 611, 797, 968, 994
Alw26I GTCTC 2 cut(s) 516, 602
AlwI GGATC 1 cut(s) 222
Ama87I CYCGRG 1 cut(s) 773
Aor13HI TCCGGA 1 cut(s) 562
ApeKI GCWGC 2 cut(s) 71, 893
ApoI RAATTY 2 cut(s) 356, 690
Asp700I GAANNNNTTC 2 cut(s) 237, 359
AspS9I GGNCC 1 cut(s) 77
AsuHPI GGTGA 1 cut(s) 1067
AsuII TTCGAA 1 cut(s) 290
AvaI CYCGRG 1 cut(s) 773
AvaII GGWCC 1 cut(s) 77
BarI GAAGNNNNNNTAC 2 cut(s) 1092, 1124
BbvI GCAGC 2 cut(s) 58, 905
BccI CCATC 2 cut(s) 300, 510
BceAI ACGGC 1 cut(s) 898
BciT130I CCWGG 1 cut(s) 552
BciVI GTATCC 1 cut(s) 457
BcoDI GTCTC 2 cut(s) 516, 602
BcuI ACTAGT 1 cut(s) 442
BfaI CTAG 4 cut(s) 89, 443, 732, 839
BfmI CTRYAG 1 cut(s) 630
BfrI CTTAAG 1 cut(s) 296
BfuI GTATCC 1 cut(s) 457
BisI GCNGC 4 cut(s) 72, 652, 894, 897
BlsI GCNGC 4 cut(s) 73, 653, 895, 898
Bme1390I CCNGG 1 cut(s) 552
Bme18I GGWCC 1 cut(s) 77
BmeT110I CYCGRG 1 cut(s) 773
BmgT120I GGNCC 1 cut(s) 77
BmrFI CCNGG 1 cut(s) 552
BmsI GCATC 2 cut(s) 497, 853
BpmI CTGGAG 2 cut(s) 513, 534
Bpu10I CCTNAGC 1 cut(s) 889
Bpu14I TTCGAA 1 cut(s) 290
BsaJI CCNNGG 1 cut(s) 551
BsaWI WCCGGW 1 cut(s) 562
BsaXI ACNNNNNCTCC 2 cut(s) 301, 331
Bse3DI GCAATG 1 cut(s) 441
BseAI TCCGGA 1 cut(s) 562
BseBI CCWGG 1 cut(s) 552
BseDI CCNNGG 1 cut(s) 551
BseGI GGATG 1 cut(s) 967
BseMI GCAATG 1 cut(s) 441
BseMII CTCAG 1 cut(s) 341
BseRI GAGGAG 2 cut(s) 564, 590
BseXI GCAGC 2 cut(s) 58, 905
BsgI GTGCAG 1 cut(s) 665
Bsh1236I CGCG 2 cut(s) 413, 426
BsiHKCI CYCGRG 1 cut(s) 773
BsiSI CCGG 2 cut(s) 563, 880
BsmAI GTCTC 2 cut(s) 516, 602
BsoBI CYCGRG 1 cut(s) 773
Bsp119I TTCGAA 1 cut(s) 290
Bsp13I TCCGGA 1 cut(s) 562
Bsp143I GATC 3 cut(s) 214, 321, 850
BspACI CCGC 9 cut(s) 413, 424, 467, 578, 651, 766, 830, 866, 896
BspCNI CTCAG 1 cut(s) 340
BspEI TCCGGA 1 cut(s) 562
BspFNI CGCG 2 cut(s) 413, 426
BspHI TCATGA 1 cut(s) 514
BspPI GGATC 1 cut(s) 222
BspT104I TTCGAA 1 cut(s) 290
BspTI CTTAAG 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 441
BssECI CCNNGG 1 cut(s) 551
BssMI GATC 3 cut(s) 214, 321, 850
Bst2UI CCWGG 1 cut(s) 552
Bst6I CTCTTC 1 cut(s) 899
BstAFI CTTAAG 1 cut(s) 296
BstBI TTCGAA 1 cut(s) 290
BstC8I GCNNGC 2 cut(s) 664, 885
BstDEI CTNAG 7 cut(s) 114, 327, 459, 826, 889, 981, 1122
BstF5I GGATG 1 cut(s) 967
BstFNI CGCG 2 cut(s) 413, 426
BstKTI GATC 3 cut(s) 217, 324, 853
BstMAI GTCTC 2 cut(s) 516, 602
BstMBI GATC 3 cut(s) 214, 321, 850
BstMWI GCNNNNNNNGC 1 cut(s) 893
BstNI CCWGG 1 cut(s) 552
BstNSI RCATGY 1 cut(s) 351
BstSCI CCNGG 1 cut(s) 550
BstSFI CTRYAG 1 cut(s) 630
BstUI CGCG 2 cut(s) 413, 426
BstV1I GCAGC 2 cut(s) 58, 905
BstX2I RGATCY 1 cut(s) 214
BstXI CCANNNNNNTGG 1 cut(s) 1096
BstYI RGATCY 1 cut(s) 214
BsuI GTATCC 1 cut(s) 457
BtgZI GCGATG 1 cut(s) 876
BtsCI GGATG 1 cut(s) 967
BtsIMutI CAGTG 1 cut(s) 267
Cac8I GCNNGC 2 cut(s) 664, 885
CciI TCATGA 1 cut(s) 514
Cfr13I GGNCC 1 cut(s) 77
Csp6I GTAC 5 cut(s) 16, 52, 345, 909, 1100
CviAII CATG 3 cut(s) 348, 515, 976
CviQI GTAC 5 cut(s) 16, 52, 345, 909, 1100
DdeI CTNAG 7 cut(s) 114, 327, 459, 826, 889, 981, 1122
DpnI GATC 3 cut(s) 216, 323, 852
DpnII GATC 3 cut(s) 214, 321, 850
Eam1104I CTCTTC 1 cut(s) 899
EarI CTCTTC 1 cut(s) 899
Eco47I GGWCC 1 cut(s) 77
Eco57I CTGAAG 3 cut(s) 633, 663, 729
Eco88I CYCGRG 1 cut(s) 773
EcoRII CCWGG 1 cut(s) 550
FaeI CATG 3 cut(s) 351, 518, 979
FatI CATG 3 cut(s) 347, 514, 975
FauI CCCGC 1 cut(s) 773
Fnu4HI GCNGC 4 cut(s) 72, 652, 894, 897
FokI GGATG 1 cut(s) 974
Fsp4HI GCNGC 4 cut(s) 72, 652, 894, 897
FspBI CTAG 4 cut(s) 89, 443, 732, 839
GluI GCNGC 4 cut(s) 72, 652, 894, 897
GsuI CTGGAG 2 cut(s) 513, 534
HapII CCGG 2 cut(s) 563, 880
Hin1II CATG 3 cut(s) 351, 518, 979
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
HindIII AAGCTT 1 cut(s) 557
HpaI GTTAAC 1 cut(s) 108
HpaII CCGG 2 cut(s) 563, 880
HphI GGTGA 1 cut(s) 1067
Hpy166II GTNNAC 3 cut(s) 108, 142, 478
Hpy188I TCNGA 4 cut(s) 330, 354, 709, 847
Hpy188III TCNNGA 7 cut(s) 26, 492, 515, 563, 732, 773, 946
Hpy8I GTNNAC 3 cut(s) 108, 142, 478
HpyAV CCTTC 4 cut(s) 248, 608, 631, 943
HpyCH4IV ACGT 1 cut(s) 62
HpyCH4V TGCA 4 cut(s) 13, 262, 662, 682
HpyF10VI GCNNNNNNNGC 1 cut(s) 893
HpyF3I CTNAG 7 cut(s) 114, 327, 459, 826, 889, 981, 1122
HpySE526I ACGT 1 cut(s) 62
Hsp92II CATG 3 cut(s) 351, 518, 979
Kpn2I TCCGGA 1 cut(s) 562
KspAI GTTAAC 1 cut(s) 108
Kzo9I GATC 3 cut(s) 214, 321, 850
LmnI GCTCC 2 cut(s) 426, 794
Lsp1109I GCAGC 2 cut(s) 58, 905
LweI GCATC 2 cut(s) 497, 853
MaeI CTAG 4 cut(s) 89, 443, 732, 839
MaeII ACGT 1 cut(s) 62
MaeIII GTNAC 4 cut(s) 63, 625, 781, 1011
MalI GATC 3 cut(s) 216, 323, 852
MboI GATC 3 cut(s) 214, 321, 850
MfeI CAATTG 1 cut(s) 1026
MflI RGATCY 1 cut(s) 214
MluCI AATT 8 cut(s) 21, 81, 123, 356, 690, 698, 833, 1026
MlyI GAGTC 1 cut(s) 604
MnlI CCTC 5 cut(s) 182, 558, 585, 611, 952
MroI TCCGGA 1 cut(s) 562
MroXI GAANNNNTTC 2 cut(s) 237, 359
MseI TTAA 8 cut(s) 99, 107, 252, 279, 297, 417, 1068, 1116
MslI CAYNNNNRTG 1 cut(s) 1094
MspA1I CMGCKG 1 cut(s) 896
MspCI CTTAAG 1 cut(s) 296
MspI CCGG 2 cut(s) 563, 880
MspR9I CCNGG 1 cut(s) 552
MunI CAATTG 1 cut(s) 1026
MvaI CCWGG 1 cut(s) 552
MvnI CGCG 2 cut(s) 413, 426
MwoI GCNNNNNNNGC 1 cut(s) 893
NdeII GATC 3 cut(s) 214, 321, 850
NlaIII CATG 3 cut(s) 351, 518, 979
NspI RCATGY 1 cut(s) 351
NspV TTCGAA 1 cut(s) 290
OliI CACNNNNGTG 1 cut(s) 1094
PaeR7I CTCGAG 1 cut(s) 773
PagI TCATGA 1 cut(s) 514
PciI ACATGT 1 cut(s) 347
PcsI WCGNNNNNNNCGW 1 cut(s) 1108
PdmI GAANNNNTTC 2 cut(s) 237, 359
PfeI GAWTC 9 cut(s) 134, 164, 292, 337, 455, 520, 842, 1001, 1021
PkrI GCNGC 4 cut(s) 73, 653, 895, 898
PleI GAGTC 1 cut(s) 603
PpsI GAGTC 1 cut(s) 603
PscI ACATGT 1 cut(s) 347
Psp1406I AACGTT 1 cut(s) 62
Psp6I CCWGG 1 cut(s) 550
PspGI CCWGG 1 cut(s) 550
PspPI GGNCC 1 cut(s) 77
PsuI RGATCY 1 cut(s) 214
RsaI GTAC 5 cut(s) 17, 53, 346, 910, 1101
RsaNI GTAC 5 cut(s) 16, 52, 345, 909, 1100
RseI CAYNNNNRTG 1 cut(s) 1094
SaqAI TTAA 8 cut(s) 99, 107, 252, 279, 297, 417, 1068, 1116
SatI GCNGC 4 cut(s) 72, 652, 894, 897
Sau3AI GATC 3 cut(s) 214, 321, 850
Sau96I GGNCC 1 cut(s) 77
SchI GAGTC 1 cut(s) 604
ScrFI CCNGG 1 cut(s) 552
SfaNI GCATC 2 cut(s) 497, 853
SfcI CTRYAG 1 cut(s) 630
Sfr274I CTCGAG 1 cut(s) 773
SfuI TTCGAA 1 cut(s) 290
SinI GGWCC 1 cut(s) 77
SlaI CTCGAG 1 cut(s) 773
SmiMI CAYNNNNRTG 1 cut(s) 1094
SmlI CTYRAG 2 cut(s) 296, 773
SmoI CTYRAG 2 cut(s) 296, 773
SpeI ACTAGT 1 cut(s) 442
Sse9I AATT 8 cut(s) 21, 81, 123, 356, 690, 698, 833, 1026
SsiI CCGC 9 cut(s) 413, 424, 467, 578, 651, 766, 830, 866, 896
SspI AATATT 1 cut(s) 942
SspMI CTAG 4 cut(s) 89, 443, 732, 839
StyD4I CCNGG 1 cut(s) 550
TaiI ACGT 1 cut(s) 65
TaqI TCGA 9 cut(s) 129, 290, 369, 384, 674, 761, 774, 853, 1111
TasI AATT 8 cut(s) 21, 81, 123, 356, 690, 698, 833, 1026
TauI GCSGC 2 cut(s) 654, 899
TfiI GAWTC 9 cut(s) 134, 164, 292, 337, 455, 520, 842, 1001, 1021
Tru1I TTAA 8 cut(s) 99, 107, 252, 279, 297, 417, 1068, 1116
Tru9I TTAA 8 cut(s) 99, 107, 252, 279, 297, 417, 1068, 1116
TscAI CASTG 1 cut(s) 274
TseI GCWGC 2 cut(s) 71, 893
TspDTI ATGAA 2 cut(s) 209, 394
TspRI CASTG 1 cut(s) 274
Vha464I CTTAAG 1 cut(s) 296
VpaK11BI GGWCC 1 cut(s) 77
XapI RAATTY 2 cut(s) 356, 690
XbaI TCTAGA 1 cut(s) 731
XceI RCATGY 1 cut(s) 351
XhoI CTCGAG 1 cut(s) 773
XmnI GAANNNNTTC 2 cut(s) 237, 359
XspI CTAG 4 cut(s) 89, 443, 732, 839
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.