Rroxscaffold_5G00376890

BRO1-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0013447
Physical Location & Seq
Forward (+)
57466360 .. 57473257
6898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00376890.1

Sequence Viewer

Length: 1239 bp
ATGATGCTGCATTTTCGAGACCCAGCAAACCTGAAGACCAAGAAGATTGTGTTTGAGGAGGCGTATGCTGCTTGTGATTCTGCAACACTTGAACAGCTGAAAGAGTTGAGCTCTAAGCGTAGGATTCTCGAGGAGTCAACTAATGAGACCAGCCCCATTACTAAGGCCATTGCAAGGGAAATGTCTGGAGGGTTAACTTCCCAGTCTCAACAGGTTCTTCAAAAACTAGAACTGTATCTTCCAGTGTTGGAAAATTTATTCTTCCACATTGATTTGATCAGCGGCAACAAACAGATAGCTCAGTGGACTTCAGAACTCAAGATACAATGGACTAGTGCTCTTAGTTCATCATCGTTCTTTAACTTTGGAGGTTCTAAATATTTTCAAATAGATAACTTGCAATTTGAGATTGTTATGACTCTTTTCCTTTATGGCGCAATCCTTCGGGAGAGAGCATCAGAAGTTCTTCCATCGGGTAGGGGATGCCATCTTACCACCAGATTGTACTGTTTGTTTTCTATTATGACCATAGATGCAATGACTTACCATTTTCTTTGCCTTGTTACAGACCTTTTGAAATCTGCTACCCTTTTCAGAGAAGCTGCTGGTGTTTATCACTATCTTGCTCATCAGGTCCTTCCTTCTCTACAGCCTTCAGTCCCTGTGGAAAAGCCACCAGAAGTTGTCCCATCTGTGTCCACTGTCATGAGCCTTATTTGTTTGGCTGAGGCACAGGCAGTAACAATAAAGAGGGCTGAAGAGAAGGGTACTACTGTTGGTCTATTGGCAAAGTTGCACCATGGTGTTGTAGAGTTGCTTGATGAAGCCGCATGTGCTTTACATACAGCTTCCGTGGAATGCAAAGATATTTCTTCGCGCTTTGTGGAATTCATCACATCTTGCAAAGCGTTACATGAGTTAAATAGTCAGAAATACTTGGCTGAAAGCCTGAAGAATGATAATGATGGCCAATTCGGGGTTGCTGTTGGACTTCTTCGACGTGCACTGATCAATGCGGAAAGGAAAATACCAAGTGAAGAATCTTGGAAATCTGTTTTCAAAAAGGAAATTGATGATTTTGCCGAATTACTCAGGAAGCATGAACATGAAAATGAATTTGTCTGGCATGAGAAAATCCCCTCTGGTGATGAGTTGCCAAAACCCGATGGTACCAAAATCGCGAGTGTCATACCTTACAATCCCAAAAGATGGGAAAGAGAACTCGCCTTCAAGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRO1

Protein Analysis

412

Amino Acids

46.42

Weight (kDa)

6.15

Isoelectric Point (pI)

47.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRO1 PF03097 104 - 399 1.2e-24 BRO1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013447)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13310
fragaria_vesca FvH4_4g27970
malus_domestica MD13G1045500.v1.1
prunus_persica Prupe.1G306500_v2.0.a1
pyrus_communis pycom13g04000
rosa_chinensis RchiOBHm_Chr4g0435681
rosa_laevigata RLG00000006567
rosa_multiflora Rmu_sc0000051.1_g000013
rosa_roxburghii Rroxscaffold_5G00376890
rosa_rugosa Rorug04G0288200 Rorug04G0288300 Rorug04G0288400 Rorug04G0288500
rosa_samantha Rh4AG343100 Rh4BG351500 Rh4CG366100 Rh4DG345700
rosa_wichuraiana Rw4G029950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1169
AccB1I GGYRCC 1 cut(s) 1169
AccB7I CCANNNNNTGG 1 cut(s) 1209
AccII CGCG 2 cut(s) 877, 1181
AciI CCGC 3 cut(s) 282, 828, 1016
AcoI YGGCCR 1 cut(s) 967
AcsI RAATTY 3 cut(s) 253, 887, 1115
AcuI CTGAAG 5 cut(s) 53, 294, 639, 777, 971
AfaI GTAC 3 cut(s) 506, 769, 1171
AfiI CCNNNNNNNGG 3 cut(s) 174, 976, 1209
AgsI TTSAA 6 cut(s) 92, 221, 386, 577, 1060, 1231
AhlI ACTAGT 1 cut(s) 332
AjiI CACGTC 1 cut(s) 1001
AleI CACNNNNGTG 1 cut(s) 801
AluBI AGCT 5 cut(s) 97, 111, 299, 602, 848
AluI AGCT 5 cut(s) 97, 111, 299, 602, 848
Alw21I GWGCWC 3 cut(s) 113, 340, 1006
Alw26I GTCTC 3 cut(s) 12, 140, 210
Alw44I GTGCAC 1 cut(s) 1002
AlwNI CAGNNNCTG 1 cut(s) 662
Ama87I CYCGRG 1 cut(s) 128
AoxI GGCC 2 cut(s) 165, 967
ApaLI GTGCAC 1 cut(s) 1002
ApeKI GCWGC 3 cut(s) 7, 68, 602
ApoI RAATTY 3 cut(s) 253, 887, 1115
Asp700I GAANNNNTTC 1 cut(s) 465
Asp718I GGTACC 1 cut(s) 1169
AspLEI GCGC 2 cut(s) 437, 879
AspS9I GGNCC 1 cut(s) 634
AsuHPI GGTGA 1 cut(s) 1157
AvaI CYCGRG 1 cut(s) 128
AvaII GGWCC 1 cut(s) 634
BaeGI GKGCMC 1 cut(s) 1006
BaeI ACNNNNGTAYC 2 cut(s) 759, 792
BalI TGGCCA 1 cut(s) 969
BanI GGYRCC 1 cut(s) 1169
BanII GRGCYC 1 cut(s) 113
BbsI GAAGAC 1 cut(s) 41
Bbv12I GWGCWC 3 cut(s) 113, 340, 1006
BbvCI CCTCAGC 1 cut(s) 726
BbvI GCAGC 2 cut(s) 55, 589
BccI CCATC 6 cut(s) 478, 495, 697, 959, 1160, 1203
BclI TGATCA 2 cut(s) 276, 1008
BcoDI GTCTC 3 cut(s) 12, 140, 210
BcuI ACTAGT 1 cut(s) 332
BfaI CTAG 2 cut(s) 227, 333
BfmI CTRYAG 1 cut(s) 647
BglII AGATCT 1 cut(s) 1233
BisI GCNGC 5 cut(s) 8, 69, 283, 603, 828
BlsI GCNGC 5 cut(s) 9, 70, 284, 604, 829
Bme18I GGWCC 1 cut(s) 634
BmeT110I CYCGRG 1 cut(s) 128
BmgBI CACGTC 1 cut(s) 1001
BmgT120I GGNCC 1 cut(s) 634
BmiI GGNNCC 1 cut(s) 1171
BmrI ACTGGG 1 cut(s) 196
BmsI GCATC 3 cut(s) 464, 473, 523
BmuI ACTGGG 1 cut(s) 196
BpiI GAAGAC 1 cut(s) 41
BplI GAGNNNNNCTC 2 cut(s) 95, 127
BpmI CTGGAG 1 cut(s) 207
Bpu10I CCTNAGC 1 cut(s) 726
BpuEI CTTGAG 1 cut(s) 302
BsaI GGTCTC 2 cut(s) 12, 140
BsaJI CCNNGG 2 cut(s) 799, 852
Bsc4I CCNNNNNNNGG 3 cut(s) 174, 976, 1209
Bse1I ACTGG 2 cut(s) 202, 242
Bse3DI GCAATG 2 cut(s) 168, 543
BseDI CCNNGG 2 cut(s) 799, 852
BseGI GGATG 1 cut(s) 488
BseLI CCNNNNNNNGG 3 cut(s) 174, 976, 1209
BseMI GCAATG 2 cut(s) 168, 543
BseMII CTCAG 3 cut(s) 314, 717, 1105
BseNI ACTGG 2 cut(s) 202, 242
BseRI GAGGAG 2 cut(s) 71, 146
BseSI GKGCMC 1 cut(s) 1006
BseXI GCAGC 2 cut(s) 55, 589
BseYI CCCAGC 1 cut(s) 22
Bsh1236I CGCG 2 cut(s) 877, 1181
BshFI GGCC 2 cut(s) 167, 969
BshNI GGYRCC 1 cut(s) 1169
BsiHKAI GWGCWC 3 cut(s) 113, 340, 1006
BsiHKCI CYCGRG 1 cut(s) 128
BslFI GGGAC 2 cut(s) 644, 671
BslI CCNNNNNNNGG 3 cut(s) 174, 976, 1209
BsmAI GTCTC 3 cut(s) 12, 140, 210
BsmFI GGGAC 2 cut(s) 644, 671
BsmI GAATGC 1 cut(s) 863
BsnI GGCC 2 cut(s) 167, 969
Bso31I GGTCTC 2 cut(s) 12, 140
BsoBI CYCGRG 1 cut(s) 128
Bsp1286I GDGCHC 3 cut(s) 113, 340, 1006
Bsp143I GATC 3 cut(s) 276, 1008, 1233
Bsp19I CCATGG 1 cut(s) 799
Bsp68I TCGCGA 1 cut(s) 1181
BspACI CCGC 3 cut(s) 282, 828, 1016
BspANI GGCC 2 cut(s) 167, 969
BspCNI CTCAG 3 cut(s) 313, 718, 1104
BspFNI CGCG 2 cut(s) 877, 1181
BspHI TCATGA 1 cut(s) 705
BspLI GGNNCC 1 cut(s) 1171
BspT107I GGYRCC 1 cut(s) 1169
BspTNI GGTCTC 2 cut(s) 12, 140
BsrDI GCAATG 2 cut(s) 168, 543
BsrI ACTGG 2 cut(s) 202, 242
BssECI CCNNGG 2 cut(s) 799, 852
BssMI GATC 3 cut(s) 276, 1008, 1233
BssT1I CCWWGG 1 cut(s) 799
Bst4CI ACNGT 4 cut(s) 234, 509, 703, 775
Bst6I CTCTTC 1 cut(s) 753
BstDEI CTNAG 6 cut(s) 114, 162, 300, 341, 726, 1091
BstDSI CCRYGG 2 cut(s) 799, 852
BstF5I GGATG 1 cut(s) 488
BstFNI CGCG 2 cut(s) 877, 1181
BstHHI GCGC 2 cut(s) 437, 879
BstKTI GATC 3 cut(s) 279, 1011, 1236
BstMAI GTCTC 3 cut(s) 12, 140, 210
BstMBI GATC 3 cut(s) 276, 1008, 1233
BstMWI GCNNNNNNNGC 2 cut(s) 68, 833
BstNSI RCATGY 1 cut(s) 834
BstSFI CTRYAG 1 cut(s) 647
BstSLI GKGCMC 1 cut(s) 1006
BstUI CGCG 2 cut(s) 877, 1181
BstV1I GCAGC 2 cut(s) 55, 589
BstV2I GAAGAC 1 cut(s) 41
BstX2I RGATCY 1 cut(s) 1233
BstYI RGATCY 1 cut(s) 1233
BsuRI GGCC 2 cut(s) 167, 969
BtgI CCRYGG 2 cut(s) 799, 852
BtrI CACGTC 1 cut(s) 1001
BtsCI GGATG 1 cut(s) 488
BtsIMutI CAGTG 4 cut(s) 249, 308, 699, 1004
BtuMI TCGCGA 1 cut(s) 1181
CaiI CAGNNNCTG 1 cut(s) 662
CciI TCATGA 1 cut(s) 705
CfoI GCGC 2 cut(s) 437, 879
Cfr13I GGNCC 1 cut(s) 634
Csp6I GTAC 3 cut(s) 505, 768, 1170
CviAII CATG 7 cut(s) 706, 800, 831, 914, 1100, 1106, 1127
CviQI GTAC 3 cut(s) 505, 768, 1170
DdeI CTNAG 6 cut(s) 114, 162, 300, 341, 726, 1091
DpnI GATC 3 cut(s) 278, 1010, 1235
DpnII GATC 3 cut(s) 276, 1008, 1233
EaeI YGGCCR 1 cut(s) 967
Eam1104I CTCTTC 1 cut(s) 753
EarI CTCTTC 1 cut(s) 753
Ecl136II GAGCTC 1 cut(s) 111
Eco130I CCWWGG 1 cut(s) 799
Eco24I GRGCYC 1 cut(s) 113
Eco31I GGTCTC 2 cut(s) 12, 140
Eco47I GGWCC 1 cut(s) 634
Eco53kI GAGCTC 1 cut(s) 111
Eco57I CTGAAG 5 cut(s) 53, 294, 639, 777, 971
Eco88I CYCGRG 1 cut(s) 128
EcoICRI GAGCTC 1 cut(s) 111
EcoO109I RGGNCCY 1 cut(s) 634
EcoRI GAATTC 1 cut(s) 887
EcoT14I CCWWGG 1 cut(s) 799
EcoT38I GRGCYC 1 cut(s) 113
ErhI CCWWGG 1 cut(s) 799
FaeI CATG 7 cut(s) 709, 803, 834, 917, 1103, 1109, 1130
FaqI GGGAC 2 cut(s) 644, 671
FatI CATG 7 cut(s) 705, 799, 830, 913, 1099, 1105, 1126
FbaI TGATCA 2 cut(s) 276, 1008
Fnu4HI GCNGC 5 cut(s) 8, 69, 283, 603, 828
FokI GGATG 1 cut(s) 495
FriOI GRGCYC 1 cut(s) 113
Fsp4HI GCNGC 5 cut(s) 8, 69, 283, 603, 828
FspBI CTAG 2 cut(s) 227, 333
GlaI GCGC 2 cut(s) 436, 878
GluI GCNGC 5 cut(s) 8, 69, 283, 603, 828
GsaI CCCAGC 1 cut(s) 26
GsuI CTGGAG 1 cut(s) 207
HaeIII GGCC 2 cut(s) 167, 969
HhaI GCGC 2 cut(s) 437, 879
Hin1II CATG 7 cut(s) 709, 803, 834, 917, 1103, 1109, 1130
Hin6I GCGC 2 cut(s) 435, 877
HinP1I GCGC 2 cut(s) 435, 877
HincII GTYRAC 2 cut(s) 138, 195
HindII GTYRAC 2 cut(s) 138, 195
HinfI GANTC 5 cut(s) 77, 124, 134, 418, 1040
HpaI GTTAAC 1 cut(s) 195
HphI GGTGA 1 cut(s) 1157
Hpy166II GTNNAC 5 cut(s) 138, 195, 306, 699, 1004
Hpy188I TCNGA 4 cut(s) 313, 460, 596, 930
Hpy188III TCNNGA 9 cut(s) 17, 128, 186, 319, 446, 706, 1093, 1180, 1231
Hpy8I GTNNAC 5 cut(s) 138, 195, 306, 699, 1004
Hpy99I CGWCG 1 cut(s) 1002
HpyAV CCTTC 6 cut(s) 452, 647, 651, 663, 757, 1237
HpyCH4III ACNGT 4 cut(s) 234, 509, 703, 775
HpyCH4IV ACGT 1 cut(s) 1000
HpyCH4V TGCA 9 cut(s) 10, 83, 173, 400, 536, 796, 861, 903, 1004
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 833
HpyF3I CTNAG 6 cut(s) 114, 162, 300, 341, 726, 1091
HpySE526I ACGT 1 cut(s) 1000
Hsp92II CATG 7 cut(s) 709, 803, 834, 917, 1103, 1109, 1130
HspAI GCGC 2 cut(s) 435, 877
KpnI GGTACC 1 cut(s) 1173
Ksp22I TGATCA 2 cut(s) 276, 1008
KspAI GTTAAC 1 cut(s) 195
Kzo9I GATC 3 cut(s) 276, 1008, 1233
Lsp1109I GCAGC 2 cut(s) 55, 589
LweI GCATC 3 cut(s) 464, 473, 523
MaeI CTAG 2 cut(s) 227, 333
MaeII ACGT 1 cut(s) 1000
MaeIII GTNAC 3 cut(s) 562, 739, 909
MalI GATC 3 cut(s) 278, 1010, 1235
MboI GATC 3 cut(s) 276, 1008, 1233
MflI RGATCY 1 cut(s) 1233
MhlI GDGCHC 3 cut(s) 113, 340, 1006
MlsI TGGCCA 1 cut(s) 969
MluCI AATT 7 cut(s) 253, 401, 887, 971, 1068, 1085, 1115
MluNI TGGCCA 1 cut(s) 969
MlyI GAGTC 2 cut(s) 143, 412
MmeI TCCRAC 2 cut(s) 228, 967
MnlI CCTC 8 cut(s) 49, 52, 124, 182, 362, 721, 744, 1150
Mox20I TGGCCA 1 cut(s) 969
MroXI GAANNNNTTC 1 cut(s) 465
MscI TGGCCA 1 cut(s) 969
MseI TTAA 3 cut(s) 194, 360, 920
MslI CAYNNNNRTG 4 cut(s) 704, 801, 1104, 1110
Msp20I TGGCCA 1 cut(s) 969
MspA1I CMGCKG 2 cut(s) 97, 282
Mva1269I GAATGC 1 cut(s) 863
MvnI CGCG 2 cut(s) 877, 1181
MwoI GCNNNNNNNGC 2 cut(s) 68, 833
NcoI CCATGG 1 cut(s) 799
NdeII GATC 3 cut(s) 276, 1008, 1233
NlaIII CATG 7 cut(s) 709, 803, 834, 917, 1103, 1109, 1130
NlaIV GGNNCC 1 cut(s) 1171
NruI TCGCGA 1 cut(s) 1181
NspI RCATGY 1 cut(s) 834
OliI CACNNNNGTG 1 cut(s) 801
PaeR7I CTCGAG 1 cut(s) 128
PagI TCATGA 1 cut(s) 705
PctI GAATGC 1 cut(s) 863
PdmI GAANNNNTTC 1 cut(s) 465
PfeI GAWTC 3 cut(s) 77, 124, 1040
PflMI CCANNNNNTGG 1 cut(s) 1209
PkrI GCNGC 5 cut(s) 9, 70, 284, 604, 829
PleI GAGTC 2 cut(s) 142, 412
PpsI GAGTC 2 cut(s) 142, 412
PpuMI RGGWCCY 1 cut(s) 634
Psp124BI GAGCTC 1 cut(s) 113
Psp5II RGGWCCY 1 cut(s) 634
PspFI CCCAGC 1 cut(s) 22
PspN4I GGNNCC 1 cut(s) 1171
PspPI GGNCC 1 cut(s) 634
PspPPI RGGWCCY 1 cut(s) 634
PsrI GAACNNNNNNTAC 2 cut(s) 306, 338
PstNI CAGNNNCTG 1 cut(s) 662
PsuI RGATCY 1 cut(s) 1233
PvuII CAGCTG 1 cut(s) 97
RruI TCGCGA 1 cut(s) 1181
RsaI GTAC 3 cut(s) 506, 769, 1171
RsaNI GTAC 3 cut(s) 505, 768, 1170
RseI CAYNNNNRTG 4 cut(s) 704, 801, 1104, 1110
SacI GAGCTC 1 cut(s) 113
SaqAI TTAA 3 cut(s) 194, 360, 920
SatI GCNGC 5 cut(s) 8, 69, 283, 603, 828
Sau3AI GATC 3 cut(s) 276, 1008, 1233
Sau96I GGNCC 1 cut(s) 634
SchI GAGTC 2 cut(s) 143, 412
SduI GDGCHC 3 cut(s) 113, 340, 1006
SfaNI GCATC 3 cut(s) 464, 473, 523
SfcI CTRYAG 1 cut(s) 647
Sfr274I CTCGAG 1 cut(s) 128
SinI GGWCC 1 cut(s) 634
SlaI CTCGAG 1 cut(s) 128
SmiMI CAYNNNNRTG 4 cut(s) 704, 801, 1104, 1110
SmlI CTYRAG 2 cut(s) 128, 317
SmoI CTYRAG 2 cut(s) 128, 317
SpeI ACTAGT 1 cut(s) 332
Sse9I AATT 7 cut(s) 253, 401, 887, 971, 1068, 1085, 1115
SsiI CCGC 3 cut(s) 282, 828, 1016
SspI AATATT 1 cut(s) 380
SspMI CTAG 2 cut(s) 227, 333
SstI GAGCTC 1 cut(s) 113
StyI CCWWGG 1 cut(s) 799
TaaI ACNGT 4 cut(s) 234, 509, 703, 775
TaiI ACGT 1 cut(s) 1003
TaqI TCGA 3 cut(s) 16, 129, 997
TasI AATT 7 cut(s) 253, 401, 887, 971, 1068, 1085, 1115
TatI WGTACW 1 cut(s) 504
TauI GCSGC 2 cut(s) 285, 830
TfiI GAWTC 3 cut(s) 77, 124, 1040
Tru1I TTAA 3 cut(s) 194, 360, 920
Tru9I TTAA 3 cut(s) 194, 360, 920
TscAI CASTG 4 cut(s) 249, 308, 706, 1011
TseI GCWGC 3 cut(s) 7, 68, 602
TspDTI ATGAA 6 cut(s) 336, 837, 880, 1116, 1122, 1128
TspGWI ACGGA 1 cut(s) 841
TspRI CASTG 4 cut(s) 249, 308, 706, 1011
Van91I CCANNNNNTGG 1 cut(s) 1209
VneI GTGCAC 1 cut(s) 1002
VpaK11BI GGWCC 1 cut(s) 634
XapI RAATTY 3 cut(s) 253, 887, 1115
XceI RCATGY 1 cut(s) 834
XhoI CTCGAG 1 cut(s) 128
XmnI GAANNNNTTC 1 cut(s) 465
XspI CTAG 2 cut(s) 227, 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.