Rorug04G0288500

BRO1-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0013447
Physical Location & Seq
Forward (+)
46159303 .. 46159837
535 bp
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UTR
Exon/CDS
Intron
Rorug04G0288500.1

Sequence Viewer

Length: 429 bp
ATGTATTCGTATGAAGTGGTCTGCATTGTGGGAATGGGGACACTTATGAGTCTTATTGTATTAGCTCACAAGGCTGTGGGATGCTTTGTTACTCACTGTGGATGGAATTCAACTCTCGAAGCATTAAGCTTGGGAGTACCAATGGTGGGATTGGTGGCAGTGCCAGACCAATTCGATCATCCGACTATTGCTAAATACGTTGCGGATGTGTGGAAAGCGAGGGTTAGGGTGAAGGTAAATGAAAAAGTCGGCTTTGCAACCAGAGGAGAAATAGCCATGTGTATTAGGCACGTGATGGATAAAGAGAAAGGGATGGAGGTTAGAAATGCTTCACTTGTTTGGAAGGAATTGGCTAAAGAGGCGATGTATGAAGGAGGAAGCTCTGATAAGAACATTGAGGAATTTGTGGCTGCACTTCAGTTAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRO1

Protein Analysis

142

Amino Acids

15.65

Weight (kDa)

6.41

Isoelectric Point (pI)

26.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 20 - 81 6.9e-09 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013447)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13310
fragaria_vesca FvH4_4g27970
malus_domestica MD13G1045500.v1.1
prunus_persica Prupe.1G306500_v2.0.a1
pyrus_communis pycom13g04000
rosa_chinensis RchiOBHm_Chr4g0435681
rosa_laevigata RLG00000006567
rosa_multiflora Rmu_sc0000051.1_g000013
rosa_roxburghii Rroxscaffold_5G00376890
rosa_rugosa Rorug04G0288200 Rorug04G0288300 Rorug04G0288400 Rorug04G0288500
rosa_samantha Rh4AG343100 Rh4BG351500 Rh4CG366100 Rh4DG345700
rosa_wichuraiana Rw4G029950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 203
AcsI RAATTY 2 cut(s) 106, 401
AcuI CTGAAG 1 cut(s) 401
AcvI CACGTG 1 cut(s) 292
AfaI GTAC 1 cut(s) 138
AfiI CCNNNNNNNGG 1 cut(s) 146
AgsI TTSAA 1 cut(s) 111
AluBI AGCT 3 cut(s) 65, 129, 381
AluI AGCT 3 cut(s) 65, 129, 381
ApeKI GCWGC 1 cut(s) 410
ApoI RAATTY 2 cut(s) 106, 401
Asp700I GAANNNNTTC 1 cut(s) 328
AsuHPI GGTGA 1 cut(s) 241
BbrPI CACGTG 1 cut(s) 292
BbvI GCAGC 1 cut(s) 397
BccI CCATC 3 cut(s) 96, 289, 307
BisI GCNGC 1 cut(s) 411
BlsI GCNGC 1 cut(s) 412
BmsI GCATC 1 cut(s) 71
BsaAI YACGTR 1 cut(s) 292
Bsc4I CCNNNNNNNGG 1 cut(s) 146
BseGI GGATG 5 cut(s) 86, 107, 178, 211, 318
BseLI CCNNNNNNNGG 1 cut(s) 146
BseRI GAGGAG 1 cut(s) 279
BseXI GCAGC 1 cut(s) 397
BsgI GTGCAG 1 cut(s) 396
BslFI GGGAC 1 cut(s) 52
BslI CCNNNNNNNGG 1 cut(s) 146
BsmFI GGGAC 1 cut(s) 52
Bsp143I GATC 1 cut(s) 175
BspACI CCGC 1 cut(s) 203
BssMI GATC 1 cut(s) 175
Bst4CI ACNGT 1 cut(s) 98
BstBAI YACGTR 1 cut(s) 292
BstF5I GGATG 5 cut(s) 86, 107, 178, 211, 318
BstKTI GATC 1 cut(s) 178
BstMBI GATC 1 cut(s) 175
BstMWI GCNNNNNNNGC 2 cut(s) 71, 359
BstV1I GCAGC 1 cut(s) 397
BtgZI GCGATG 1 cut(s) 377
BtsCI GGATG 5 cut(s) 86, 107, 178, 211, 318
BtsI GCAGTG 1 cut(s) 165
BtsIMutI CAGTG 2 cut(s) 94, 165
Csp6I GTAC 1 cut(s) 137
CviAII CATG 1 cut(s) 277
CviJI RGCY 8 cut(s) 65, 74, 129, 252, 275, 353, 381, 410
CviKI_1 RGCY 8 cut(s) 65, 74, 129, 252, 275, 353, 381, 410
CviQI GTAC 1 cut(s) 137
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 401
Eco72I CACGTG 1 cut(s) 292
EcoRI GAATTC 1 cut(s) 106
FaeI CATG 1 cut(s) 280
FaiI YATR 4 cut(s) 12, 47, 278, 369
FaqI GGGAC 1 cut(s) 52
FatI CATG 1 cut(s) 276
Fnu4HI GCNGC 1 cut(s) 411
FokI GGATG 5 cut(s) 93, 114, 165, 218, 325
Fsp4HI GCNGC 1 cut(s) 411
GluI GCNGC 1 cut(s) 411
Hin1II CATG 1 cut(s) 280
HindIII AAGCTT 1 cut(s) 127
HinfI GANTC 1 cut(s) 49
HphI GGTGA 1 cut(s) 241
Hpy188I TCNGA 2 cut(s) 183, 385
Hpy188III TCNNGA 1 cut(s) 116
HpyAV CCTTC 3 cut(s) 226, 337, 365
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4IV ACGT 2 cut(s) 198, 291
HpyCH4V TGCA 3 cut(s) 24, 257, 413
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 359
HpySE526I ACGT 2 cut(s) 198, 291
Hsp92II CATG 1 cut(s) 280
Kzo9I GATC 1 cut(s) 175
LpnPI CCDG 2 cut(s) 177, 274
Lsp1109I GCAGC 1 cut(s) 397
LweI GCATC 1 cut(s) 71
MaeII ACGT 2 cut(s) 198, 291
MaeIII GTNAC 1 cut(s) 88
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MluCI AATT 5 cut(s) 106, 170, 347, 401, 423
MlyI GAGTC 1 cut(s) 58
MmeI TCCRAC 1 cut(s) 206
MnlI CCTC 6 cut(s) 213, 257, 310, 352, 368, 391
MroXI GAANNNNTTC 1 cut(s) 328
MseI TTAA 3 cut(s) 125, 422, 427
MwoI GCNNNNNNNGC 2 cut(s) 71, 359
NdeII GATC 1 cut(s) 175
NlaIII CATG 1 cut(s) 280
PdmI GAANNNNTTC 1 cut(s) 328
PkrI GCNGC 1 cut(s) 412
PleI GAGTC 1 cut(s) 57
PmaCI CACGTG 1 cut(s) 292
PmlI CACGTG 1 cut(s) 292
PpsI GAGTC 1 cut(s) 57
Ppu21I YACGTR 1 cut(s) 292
PspCI CACGTG 1 cut(s) 292
RsaI GTAC 1 cut(s) 138
RsaNI GTAC 1 cut(s) 137
SaqAI TTAA 3 cut(s) 125, 422, 427
SatI GCNGC 1 cut(s) 411
Sau3AI GATC 1 cut(s) 175
SchI GAGTC 1 cut(s) 58
SetI ASST 7 cut(s) 67, 131, 201, 237, 294, 321, 383
SfaNI GCATC 1 cut(s) 71
Sse9I AATT 5 cut(s) 106, 170, 347, 401, 423
SsiI CCGC 1 cut(s) 203
TaaI ACNGT 1 cut(s) 98
TaiI ACGT 2 cut(s) 201, 294
TaqI TCGA 2 cut(s) 117, 174
TasI AATT 5 cut(s) 106, 170, 347, 401, 423
Tru1I TTAA 3 cut(s) 125, 422, 427
Tru9I TTAA 3 cut(s) 125, 422, 427
TscAI CASTG 2 cut(s) 101, 165
TseI GCWGC 1 cut(s) 410
TspDTI ATGAA 3 cut(s) 27, 255, 384
TspRI CASTG 2 cut(s) 101, 165
XapI RAATTY 2 cut(s) 106, 401
XmnI GAANNNNTTC 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.