Rorug04G0288400

BRO1-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0013447
Physical Location & Seq
Forward (+)
46133465 .. 46145271
11807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0288400.1

Sequence Viewer

Length: 1119 bp
ATGGAAGAAATGAATACGGAGAAGGAAGAACAAACGGGTGCTAAGCAAAGTCACATCCTCGTTTTCTCTTTCCCAGTTCAAGGTCATATAAACCCAATGCTGGAGTTCTCCAAGCGCCTGGCCTCTAAAGGTCAGAGGGTCACTCTAGTCACAACCACCAAAGCTAGTAAGTCCTTGCAAGTCGGCGATCCAATTACCTCATTCGGATGTAACCTTAAGGTGGAATTTATATCAGATGGCACTGAACAAGCTGATCAAGGATCTGGTGCCAGTAAGGATCTCTTCGAGCTTTTAAAAAGTGCAACTACTAAATCGTTAGCCAAGCTCATCACTAACATCAAGAACAGTAATGATGCAACTGAGAAATACCCACTCAAGTTCCTGGTTTATGACTATATCATGCCTTGGGCTCTGGATGTAGCGCGACAACACGGCATGGATGGAGCTCCATTTTATCCAACTTCAAGCGGAGTTGCAGCTCTTTATTATCAATTCCTTGAAGGAACACTAAAGCTTCCCTTAAGGGAAGGGCAGCCAGCAACATTGCCTTCCATGCCACCACTAGAGCTCAATGATTTACCAACTTTCCTCTCAGATCTTGACTTATACCCACTTCTCCTCAAACTCACGGCTCACATCCCCAATTTGAGAGAAGTAAAATGGATTTTTCATACAACGTTCGATAAATTGGAAAGCGAGGTACTAGAATCAATGGCAAGCCATGGCTTGCCTGTCAGGGCGATCGGACCAACAGTTCCATCAATGTTTTTGGACAAAAGGTTGGAGGATGACAAAGACTATGGTCTCAACCTTTTAAAGCCTGATGAGGAGAATTGCATGAAGTGGTTAGACTCCAAGGAAACCGGGTCAGTTGTTTATGCATCATTTGGAAGCTTGTCCAATCTGAGCAAAGAGGAAGTTGAGGAACTGGCATCATGTCTAACTAACTGTAGCTACTACTTCTTATGGGTAGTCAGAGAAACAGAAAAAGAAAAACTCCCTGAAAAATTTCTAGATGAGATAACAAGGAAGGGTCTCGTGGTGAGCTGGTGTAAGCAATTACAAGTATCACTACTAGAAAAATGGCCTAAGGGGACACATTACATGTGTGCCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRO1

Protein Analysis

372

Amino Acids

41.9

Weight (kDa)

5.35

Isoelectric Point (pI)

43.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013447)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13310
fragaria_vesca FvH4_4g27970
malus_domestica MD13G1045500.v1.1
prunus_persica Prupe.1G306500_v2.0.a1
pyrus_communis pycom13g04000
rosa_chinensis RchiOBHm_Chr4g0435681
rosa_laevigata RLG00000006567
rosa_multiflora Rmu_sc0000051.1_g000013
rosa_roxburghii Rroxscaffold_5G00376890
rosa_rugosa Rorug04G0288200 Rorug04G0288300 Rorug04G0288400 Rorug04G0288500
rosa_samantha Rh4AG343100 Rh4BG351500 Rh4CG366100 Rh4DG345700
rosa_wichuraiana Rw4G029950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 266
AccII CGCG 1 cut(s) 424
AciI CCGC 1 cut(s) 468
AclI AACGTT 1 cut(s) 677
AclWI GGATC 3 cut(s) 182, 268, 285
AcsI RAATTY 2 cut(s) 224, 1007
AfaI GTAC 1 cut(s) 702
AfiI CCNNNNNNNGG 3 cut(s) 80, 100, 220
AflII CTTAAG 2 cut(s) 215, 520
AflIII ACRYGT 1 cut(s) 1104
AgsI TTSAA 3 cut(s) 80, 465, 500
AjnI CCWGG 2 cut(s) 117, 381
AloI GAACNNNNNNTCC 2 cut(s) 738, 770
Alw21I GWGCWC 2 cut(s) 448, 570
Alw26I GTCTC 2 cut(s) 809, 1040
AlwI GGATC 3 cut(s) 182, 268, 285
AoxI GGCC 2 cut(s) 120, 1085
ApeKI GCWGC 2 cut(s) 476, 532
ApoI RAATTY 2 cut(s) 224, 1007
Asp700I GAANNNNTTC 1 cut(s) 1008
AspLEI GCGC 2 cut(s) 117, 424
AspS9I GGNCC 1 cut(s) 746
AsuC2I CCSGG 1 cut(s) 865
AsuHPI GGTGA 1 cut(s) 1054
AvaII GGWCC 1 cut(s) 746
AxyI CCTNAGG 1 cut(s) 1089
BanI GGYRCC 1 cut(s) 266
BanII GRGCYC 3 cut(s) 412, 448, 570
BauI CACGAG 1 cut(s) 1037
Bbv12I GWGCWC 2 cut(s) 448, 570
BbvI GCAGC 2 cut(s) 488, 544
BccI CCATC 3 cut(s) 230, 434, 766
BceAI ACGGC 2 cut(s) 448, 645
BciT130I CCWGG 2 cut(s) 119, 383
BclI TGATCA 1 cut(s) 253
BcnI CCSGG 1 cut(s) 865
BcoDI GTCTC 2 cut(s) 809, 1040
BfaI CTAG 6 cut(s) 146, 165, 563, 704, 1013, 1076
BfmI CTRYAG 1 cut(s) 949
BfoI RGCGCY 1 cut(s) 118
BfrI CTTAAG 2 cut(s) 215, 520
BglII AGATCT 1 cut(s) 595
BisI GCNGC 2 cut(s) 477, 533
BlpI GCTNAGC 1 cut(s) 42
BlsI GCNGC 2 cut(s) 478, 534
Bme1390I CCNGG 3 cut(s) 119, 383, 865
Bme18I GGWCC 1 cut(s) 746
BmgT120I GGNCC 1 cut(s) 746
BmiI GGNNCC 1 cut(s) 268
BmrFI CCNGG 3 cut(s) 119, 383, 865
BmrI ACTGGG 1 cut(s) 68
BmsI GCATC 3 cut(s) 343, 890, 941
BmuI ACTGGG 1 cut(s) 68
BoxI GACNNNNGTC 1 cut(s) 801
BplI GAGNNNNNCTC 2 cut(s) 127, 159
BpmI CTGGAG 1 cut(s) 122
Bpu1102I GCTNAGC 1 cut(s) 42
BpuEI CTTGAG 1 cut(s) 359
BpuMI CCSGG 1 cut(s) 865
BsaI GGTCTC 2 cut(s) 809, 1040
BsaJI CCNNGG 3 cut(s) 404, 721, 855
Bsc4I CCNNNNNNNGG 3 cut(s) 80, 100, 220
Bse1I ACTGG 3 cut(s) 74, 270, 933
Bse21I CCTNAGG 1 cut(s) 1089
Bse3DI GCAATG 1 cut(s) 542
BseBI CCWGG 2 cut(s) 119, 383
BseDI CCNNGG 3 cut(s) 404, 721, 855
BseGI GGATG 6 cut(s) 54, 212, 421, 445, 636, 793
BseLI CCNNNNNNNGG 3 cut(s) 80, 100, 220
BseMI GCAATG 1 cut(s) 542
BseMII CTCAG 3 cut(s) 351, 606, 896
BseNI ACTGG 3 cut(s) 74, 270, 933
BseRI GAGGAG 2 cut(s) 608, 842
BseXI GCAGC 2 cut(s) 488, 544
Bsh1236I CGCG 1 cut(s) 424
Bsh1285I CGRYCG 1 cut(s) 744
BshFI GGCC 2 cut(s) 122, 1087
BshNI GGYRCC 1 cut(s) 266
BsiEI CGRYCG 1 cut(s) 744
BsiHKAI GWGCWC 2 cut(s) 448, 570
BsiSI CCGG 1 cut(s) 864
BslFI GGGAC 1 cut(s) 1108
BslI CCNNNNNNNGG 3 cut(s) 80, 100, 220
BsmAI GTCTC 2 cut(s) 809, 1040
BsmFI GGGAC 1 cut(s) 1108
BsnI GGCC 2 cut(s) 122, 1087
Bso31I GGTCTC 2 cut(s) 809, 1040
Bsp1286I GDGCHC 3 cut(s) 412, 448, 570
Bsp143I GATC 6 cut(s) 187, 253, 260, 277, 595, 741
Bsp1720I GCTNAGC 1 cut(s) 42
Bsp19I CCATGG 1 cut(s) 721
BspACI CCGC 1 cut(s) 468
BspANI GGCC 2 cut(s) 122, 1087
BspCNI CTCAG 3 cut(s) 352, 605, 897
BspFNI CGCG 1 cut(s) 424
BspLI GGNNCC 1 cut(s) 268
BspPI GGATC 3 cut(s) 182, 268, 285
BspT107I GGYRCC 1 cut(s) 266
BspTI CTTAAG 2 cut(s) 215, 520
BspTNI GGTCTC 2 cut(s) 809, 1040
BsrDI GCAATG 1 cut(s) 542
BsrI ACTGG 3 cut(s) 74, 270, 933
BssECI CCNNGG 3 cut(s) 404, 721, 855
BssMI GATC 6 cut(s) 187, 253, 260, 277, 595, 741
BssSI CACGAG 1 cut(s) 1037
BssT1I CCWWGG 3 cut(s) 404, 721, 855
Bst2BI CACGAG 1 cut(s) 1037
Bst2UI CCWGG 2 cut(s) 119, 383
Bst4CI ACNGT 3 cut(s) 347, 754, 950
Bst6I CTCTTC 1 cut(s) 287
BstAFI CTTAAG 2 cut(s) 215, 520
BstC8I GCNNGC 3 cut(s) 537, 718, 728
BstDEI CTNAG 5 cut(s) 42, 360, 592, 905, 1089
BstDSI CCRYGG 1 cut(s) 721
BstF5I GGATG 6 cut(s) 54, 212, 421, 445, 636, 793
BstFNI CGCG 1 cut(s) 424
BstH2I RGCGCY 1 cut(s) 118
BstHHI GCGC 2 cut(s) 117, 424
BstKTI GATC 6 cut(s) 190, 256, 263, 280, 598, 744
BstMAI GTCTC 2 cut(s) 809, 1040
BstMBI GATC 6 cut(s) 187, 253, 260, 277, 595, 741
BstMCI CGRYCG 1 cut(s) 744
BstMWI GCNNNNNNNGC 1 cut(s) 553
BstNI CCWGG 2 cut(s) 119, 383
BstNSI RCATGY 1 cut(s) 1108
BstPAI GACNNNNGTC 1 cut(s) 801
BstSCI CCNGG 3 cut(s) 117, 381, 863
BstSFI CTRYAG 1 cut(s) 949
BstUI CGCG 1 cut(s) 424
BstV1I GCAGC 2 cut(s) 488, 544
BstX2I RGATCY 3 cut(s) 260, 277, 595
BstXI CCANNNNNNTGG 1 cut(s) 118
BstYI RGATCY 3 cut(s) 260, 277, 595
Bsu36I CCTNAGG 1 cut(s) 1089
BsuRI GGCC 2 cut(s) 122, 1087
BtgI CCRYGG 1 cut(s) 721
BtsCI GGATG 6 cut(s) 54, 212, 421, 445, 636, 793
BtsIMutI CAGTG 1 cut(s) 240
Cac8I GCNNGC 3 cut(s) 537, 718, 728
CfoI GCGC 2 cut(s) 117, 424
Cfr13I GGNCC 1 cut(s) 746
Csp6I GTAC 1 cut(s) 701
CviAII CATG 7 cut(s) 400, 436, 553, 722, 838, 936, 1105
CviQI GTAC 1 cut(s) 701
DdeI CTNAG 5 cut(s) 42, 360, 592, 905, 1089
DpnI GATC 6 cut(s) 189, 255, 262, 279, 597, 743
DpnII GATC 6 cut(s) 187, 253, 260, 277, 595, 741
DraI TTTAAA 2 cut(s) 294, 816
Eam1104I CTCTTC 1 cut(s) 287
EarI CTCTTC 1 cut(s) 287
Ecl136II GAGCTC 2 cut(s) 446, 568
Eco130I CCWWGG 3 cut(s) 404, 721, 855
Eco24I GRGCYC 3 cut(s) 412, 448, 570
Eco31I GGTCTC 2 cut(s) 809, 1040
Eco47I GGWCC 1 cut(s) 746
Eco53kI GAGCTC 2 cut(s) 446, 568
Eco81I CCTNAGG 1 cut(s) 1089
EcoICRI GAGCTC 2 cut(s) 446, 568
EcoRII CCWGG 2 cut(s) 117, 381
EcoT14I CCWWGG 3 cut(s) 404, 721, 855
EcoT22I ATGCAT 1 cut(s) 883
EcoT38I GRGCYC 3 cut(s) 412, 448, 570
ErhI CCWWGG 3 cut(s) 404, 721, 855
FaeI CATG 7 cut(s) 403, 439, 556, 725, 841, 939, 1108
FalI AAGNNNNNCTT 4 cut(s) 266, 298, 503, 535
FaqI GGGAC 1 cut(s) 1108
FatI CATG 7 cut(s) 399, 435, 552, 721, 837, 935, 1104
FbaI TGATCA 1 cut(s) 253
Fnu4HI GCNGC 2 cut(s) 477, 533
FokI GGATG 6 cut(s) 41, 219, 428, 452, 623, 800
FriOI GRGCYC 3 cut(s) 412, 448, 570
Fsp4HI GCNGC 2 cut(s) 477, 533
FspBI CTAG 6 cut(s) 146, 165, 563, 704, 1013, 1076
GlaI GCGC 2 cut(s) 116, 423
GluI GCNGC 2 cut(s) 477, 533
GsuI CTGGAG 1 cut(s) 122
HaeII RGCGCY 1 cut(s) 118
HaeIII GGCC 2 cut(s) 122, 1087
HapII CCGG 1 cut(s) 864
HhaI GCGC 2 cut(s) 117, 424
Hin1II CATG 7 cut(s) 403, 439, 556, 725, 841, 939, 1108
Hin6I GCGC 2 cut(s) 115, 422
HinP1I GCGC 2 cut(s) 115, 422
HindIII AAGCTT 2 cut(s) 512, 892
HinfI GANTC 2 cut(s) 707, 851
HpaII CCGG 1 cut(s) 864
HphI GGTGA 1 cut(s) 1054
Hpy188I TCNGA 7 cut(s) 135, 206, 235, 595, 746, 906, 977
Hpy188III TCNNGA 4 cut(s) 340, 413, 599, 1013
HpyAV CCTTC 5 cut(s) 16, 494, 521, 558, 1024
HpyCH4III ACNGT 3 cut(s) 347, 754, 950
HpyCH4IV ACGT 1 cut(s) 677
HpyCH4V TGCA 6 cut(s) 178, 302, 356, 476, 837, 881
HpyF10VI GCNNNNNNNGC 1 cut(s) 553
HpyF3I CTNAG 5 cut(s) 42, 360, 592, 905, 1089
HpySE526I ACGT 1 cut(s) 677
Hsp92II CATG 7 cut(s) 403, 439, 556, 725, 841, 939, 1108
HspAI GCGC 2 cut(s) 115, 422
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 6 cut(s) 187, 253, 260, 277, 595, 741
LmnI GCTCC 2 cut(s) 443, 451
Lsp1109I GCAGC 2 cut(s) 488, 544
LweI GCATC 3 cut(s) 343, 890, 941
MaeI CTAG 6 cut(s) 146, 165, 563, 704, 1013, 1076
MaeII ACGT 1 cut(s) 677
MaeIII GTNAC 4 cut(s) 50, 139, 148, 209
MalI GATC 6 cut(s) 189, 255, 262, 279, 597, 743
MboI GATC 6 cut(s) 187, 253, 260, 277, 595, 741
MboII GAAGA 3 cut(s) 17, 38, 274
MflI RGATCY 3 cut(s) 260, 277, 595
MhlI GDGCHC 3 cut(s) 412, 448, 570
MluCI AATT 8 cut(s) 192, 224, 491, 643, 686, 832, 1007, 1058
MlyI GAGTC 1 cut(s) 845
MmeI TCCRAC 2 cut(s) 482, 762
Mph1103I ATGCAT 1 cut(s) 883
MroXI GAANNNNTTC 1 cut(s) 1008
MseI TTAA 4 cut(s) 216, 293, 521, 815
MslI CAYNNNNRTG 1 cut(s) 205
MspCI CTTAAG 2 cut(s) 215, 520
MspI CCGG 1 cut(s) 864
MspR9I CCNGG 3 cut(s) 119, 383, 865
MvaI CCWGG 2 cut(s) 119, 383
MvnI CGCG 1 cut(s) 424
MwoI GCNNNNNNNGC 1 cut(s) 553
NciI CCSGG 1 cut(s) 865
NcoI CCATGG 1 cut(s) 721
NdeII GATC 6 cut(s) 187, 253, 260, 277, 595, 741
NlaIII CATG 7 cut(s) 403, 439, 556, 725, 841, 939, 1108
NlaIV GGNNCC 1 cut(s) 268
NmuCI GTSAC 3 cut(s) 50, 139, 148
NsiI ATGCAT 1 cut(s) 883
NspI RCATGY 1 cut(s) 1108
PciI ACATGT 1 cut(s) 1104
PdmI GAANNNNTTC 1 cut(s) 1008
PfeI GAWTC 1 cut(s) 707
PkrI GCNGC 2 cut(s) 478, 534
Ple19I CGATCG 1 cut(s) 744
PleI GAGTC 1 cut(s) 845
PpsI GAGTC 1 cut(s) 845
PscI ACATGT 1 cut(s) 1104
PshAI GACNNNNGTC 1 cut(s) 801
Psp124BI GAGCTC 2 cut(s) 448, 570
Psp1406I AACGTT 1 cut(s) 677
Psp6I CCWGG 2 cut(s) 117, 381
PspGI CCWGG 2 cut(s) 117, 381
PspN4I GGNNCC 1 cut(s) 268
PspPI GGNCC 1 cut(s) 746
PsuI RGATCY 3 cut(s) 260, 277, 595
PvuI CGATCG 1 cut(s) 744
RsaI GTAC 1 cut(s) 702
RsaNI GTAC 1 cut(s) 701
RseI CAYNNNNRTG 1 cut(s) 205
SacI GAGCTC 2 cut(s) 448, 570
SaqAI TTAA 4 cut(s) 216, 293, 521, 815
SatI GCNGC 2 cut(s) 477, 533
Sau3AI GATC 6 cut(s) 187, 253, 260, 277, 595, 741
Sau96I GGNCC 1 cut(s) 746
SchI GAGTC 1 cut(s) 845
ScrFI CCNGG 3 cut(s) 119, 383, 865
SduI GDGCHC 3 cut(s) 412, 448, 570
SfaNI GCATC 3 cut(s) 343, 890, 941
SfcI CTRYAG 1 cut(s) 949
SinI GGWCC 1 cut(s) 746
SmiMI CAYNNNNRTG 1 cut(s) 205
SmlI CTYRAG 3 cut(s) 215, 374, 520
SmoI CTYRAG 3 cut(s) 215, 374, 520
Sse9I AATT 8 cut(s) 192, 224, 491, 643, 686, 832, 1007, 1058
SsiI CCGC 1 cut(s) 468
SspMI CTAG 6 cut(s) 146, 165, 563, 704, 1013, 1076
SstI GAGCTC 2 cut(s) 448, 570
StyD4I CCNGG 3 cut(s) 117, 381, 863
StyI CCWWGG 3 cut(s) 404, 721, 855
TaaI ACNGT 3 cut(s) 347, 754, 950
TaiI ACGT 1 cut(s) 680
TaqI TCGA 2 cut(s) 285, 681
TasI AATT 8 cut(s) 192, 224, 491, 643, 686, 832, 1007, 1058
TfiI GAWTC 1 cut(s) 707
Tru1I TTAA 4 cut(s) 216, 293, 521, 815
Tru9I TTAA 4 cut(s) 216, 293, 521, 815
TscAI CASTG 1 cut(s) 247
TseFI GTSAC 3 cut(s) 50, 139, 148
TseI GCWGC 2 cut(s) 476, 532
Tsp45I GTSAC 3 cut(s) 50, 139, 148
TspDTI ATGAA 3 cut(s) 26, 659, 854
TspGWI ACGGA 1 cut(s) 32
TspRI CASTG 1 cut(s) 247
Vha464I CTTAAG 2 cut(s) 215, 520
VpaK11BI GGWCC 1 cut(s) 746
XapI RAATTY 2 cut(s) 224, 1007
XbaI TCTAGA 1 cut(s) 1012
XceI RCATGY 1 cut(s) 1108
XmnI GAANNNNTTC 1 cut(s) 1008
XspI CTAG 6 cut(s) 146, 165, 563, 704, 1013, 1076
Zsp2I ATGCAT 1 cut(s) 883
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.