Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013235

Physical Location & Seq

Genomic Coordinates Reverse (-)

4612731 .. 4615353

Gene Structure 2623 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G13450.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGTTCATTTCCGACAAATCTCGTCCTACTGATTTCTACAAAGACGATCATCACAATTCCTCCACCACCAGCACCACACGCGATATGATGATCGATGTACTCACCACTACCAACGAATCAGTAGATCTACAATCTCACCACCACCACAATCACCACAATCATCATCTCCACCAATCTCAGCCACAACAACAGATTCTCCTCGGAGAAAGCAGTGGAGAAGATCACGAAGTTAAAGCACCAAAGAAACGAGCGGAGACATGGGTTCAAGACGAAACTCGTAGCTTAATCATGTTCCGTAGAGGTATGGATGGTTTATTCAATACATCCAAATCTAATAAACATCTCTGGGAACAGATTTCGTCTAAGATGAGAGAAAAAGGGTTTGATCGATCTCCGACTATGTGTACTGATAAATGGAGGAATCTGTTGAAAGAGTTTAAGAAAGCTAAGCATCATGATAGAGGAAATGGATCGGCGAAGATGTCGTATTACAAAGAGATTGAAGATATTCTTAGAGAGAGGAGCAAAAAAGTGACACCACCACAGTATAATAAGAGCCCTAATACACCACCTACATCAGCCAAAGTTGATTCCTTTATGCAATTTACTGATAAAGGTTTTGATGATACGAGCATTTCTTTTGGATCCGTTGAAGCTAATGGCAGGCCAGCCTTAAACCTTGAAAGGCGTCTTGATCATGATGGTCATCCTCTTGCAATCACTACAGCAGTTGATGCTGTTGCAGCAAATGGAGTTACTCCTTGGAATTGGAGAGAGACTCCTGGAAACGGTGATGATAGTCATGGTCAGCCTTTTGGTGGTAGGGTCATAACAGTGAAATTTGGTGACTATACAAGAAGAATCGGTGTTGATGGTAGTGCAGAAGCAATCAAAGAGGTAATCAGATCTGCTTTTGGGTTAAGAACTCGAAGGGCTTTTTGGTTAGAAGATGAAGATCAGATTATTCGCTGTCTTGACCGAGACATGCCCTTAGGGAACTATCTACTCCGTCTGGATGATGGACTGGCCATTAGGGTTTGCCATTATGATGAATCCAACCAATTACCAGTCCATTCAGAAGAGAAAATCTTCTACACTGAAGAAGACTACCGCGAGTTTCTGGCTCGACAGGGATGGTCAAGCCTGCAAGTTGATGGTTTTAGGAACATAGAAAACATGGATGATCTTCAACCTGGTGCTGTGTATCGAGGTGTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

406

Amino Acids

46.68

Weight (kDa)

6.38

Isoelectric Point (pI)

54.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	86 - 170	1.9e-23	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13450 AT3G25990
fragaria_vesca	FvH4_4g24610 FvH4_4g24610
malus_domestica	MD13G1109800.v1.1 MD16G1109700.v1.1
prunus_persica	Prupe.1G235200_v2.0.a1
pyrus_communis	pycom13g09560
rosa_chinensis	RchiOBHm_Chr4g0431621
rosa_laevigata	RLG00000006903
rosa_multiflora	Rmu_ssc0000487.1_g000003
rosa_roxburghii	Rroxscaffold_5G00373080
rosa_rugosa	Rorug04G0251400
rosa_samantha	Rh4AG308000 Rh4BG315600 Rh4CG331100 Rh4DG310600
rosa_wichuraiana	Rw4G026710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	251
AccII	CGCG	2 cut(s)	81, 1113
AciI	CCGC	2 cut(s)	251, 1111
AclWI	GGATC	3 cut(s)	478, 639, 652
AcoI	YGGCCR	1 cut(s)	1026
AcsI	RAATTY	1 cut(s)	839
AcuI	CTGAAG	1 cut(s)	1119
AcyI	GRCGYC	1 cut(s)	688
AfaI	GTAC	2 cut(s)	99, 406
AfiI	CCNNNNNNNGG	2 cut(s)	788, 818
AgsI	TTSAA	7 cut(s)	266, 319, 430, 503, 653, 683, 1190
AjnI	CCWGG	2 cut(s)	781, 1192
AjuI	GAANNNNNNNTTGG	2 cut(s)	922, 954
AluBI	AGCT	3 cut(s)	282, 446, 656
AluI	AGCT	3 cut(s)	282, 446, 656
Alw26I	GTCTC	3 cut(s)	248, 770, 975
AlwI	GGATC	3 cut(s)	478, 639, 652
AoxI	GGCC	2 cut(s)	665, 1026
ApeKI	GCWGC	1 cut(s)	743
ApoI	RAATTY	1 cut(s)	839
Asp700I	GAANNNNTTC	2 cut(s)	507, 1088
AsuHPI	GGTGA	5 cut(s)	94, 128, 143, 803, 857
AxyI	CCTNAGG	1 cut(s)	991
BalI	TGGCCA	1 cut(s)	1028
BamHI	GGATCC	1 cut(s)	644
BanII	GRGCYC	1 cut(s)	560
BbsI	GAAGAC	1 cut(s)	1110
BbvI	GCAGC	1 cut(s)	755
BccI	CCATC	6 cut(s)	302, 695, 866, 1013, 1128, 1148
BciT130I	CCWGG	2 cut(s)	783, 1194
BclI	TGATCA	1 cut(s)	694
BcoDI	GTCTC	3 cut(s)	248, 770, 975
BfmI	CTRYAG	1 cut(s)	723
BglII	AGATCT	2 cut(s)	124, 905
BisI	GCNGC	1 cut(s)	744
BlpI	GCTNAGC	1 cut(s)	447
BlsI	GCNGC	1 cut(s)	745
Bme1390I	CCNGG	2 cut(s)	783, 1194
BmiI	GGNNCC	1 cut(s)	646
BmrFI	CCNGG	2 cut(s)	783, 1194
BmsI	GCATC	2 cut(s)	460, 724
BpiI	GAAGAC	1 cut(s)	1110
BplI	GAGNNNNNCTC	2 cut(s)	763, 795
Bpu1102I	GCTNAGC	1 cut(s)	447
Bsa29I	ATCGAT	2 cut(s)	93, 388
BsaBI	GATNNNNATC	2 cut(s)	705, 954
BsaHI	GRCGYC	1 cut(s)	688
BsaJI	CCNNGG	2 cut(s)	199, 761
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 74, 180, 210
Bsc4I	CCNNNNNNNGG	2 cut(s)	788, 818
Bse1I	ACTGG	2 cut(s)	1029, 1067
Bse21I	CCTNAGG	1 cut(s)	991
Bse8I	GATNNNNATC	2 cut(s)	705, 954
BseBI	CCWGG	2 cut(s)	783, 1194
BseCI	ATCGAT	2 cut(s)	93, 388
BseDI	CCNNGG	2 cut(s)	199, 761
BseGI	GGATG	6 cut(s)	313, 323, 706, 1021, 1139, 1186
BseJI	GATNNNNATC	2 cut(s)	705, 954
BseLI	CCNNNNNNNGG	2 cut(s)	788, 818
BseMII	CTCAG	1 cut(s)	191
BseNI	ACTGG	2 cut(s)	1029, 1067
BseRI	GAGGAG	2 cut(s)	188, 535
BseXI	GCAGC	1 cut(s)	755
BsgI	GTGCAG	1 cut(s)	900
Bsh1236I	CGCG	2 cut(s)	81, 1113
BshFI	GGCC	2 cut(s)	667, 1028
BshVI	ATCGAT	2 cut(s)	93, 388
BslI	CCNNNNNNNGG	2 cut(s)	788, 818
BsmAI	GTCTC	3 cut(s)	248, 770, 975
BsnI	GGCC	2 cut(s)	667, 1028
Bsp1286I	GDGCHC	1 cut(s)	560
Bsp1720I	GCTNAGC	1 cut(s)	447
BspACI	CCGC	2 cut(s)	251, 1111
BspANI	GGCC	2 cut(s)	667, 1028
BspCNI	CTCAG	1 cut(s)	190
BspDI	ATCGAT	2 cut(s)	93, 388
BspFNI	CGCG	2 cut(s)	81, 1113
BspHI	TCATGA	2 cut(s)	454, 697
BspLI	GGNNCC	1 cut(s)	646
BspPI	GGATC	3 cut(s)	478, 639, 652
BsrBI	CCGCTC	1 cut(s)	251
BsrI	ACTGG	2 cut(s)	1029, 1067
BssECI	CCNNGG	2 cut(s)	199, 761
BssNI	GRCGYC	1 cut(s)	688
BssT1I	CCWWGG	1 cut(s)	761
Bst2UI	CCWGG	2 cut(s)	783, 1194
Bst4CI	ACNGT	3 cut(s)	546, 791, 835
Bst6I	CTCTTC	1 cut(s)	1074
BstACI	GRCGYC	1 cut(s)	688
BstAPI	GCANNNNNTGC	1 cut(s)	734
BstC8I	GCNNGC	3 cut(s)	665, 669, 1145
BstDEI	CTNAG	5 cut(s)	177, 363, 447, 512, 991
BstF5I	GGATG	6 cut(s)	313, 323, 706, 1021, 1139, 1186
BstFNI	CGCG	2 cut(s)	81, 1113
BstMAI	GTCTC	3 cut(s)	248, 770, 975
BstMWI	GCNNNNNNNGC	3 cut(s)	78, 734, 743
BstNI	CCWGG	2 cut(s)	783, 1194
BstNSI	RCATGY	1 cut(s)	988
BstSCI	CCNGG	2 cut(s)	781, 1192
BstSFI	CTRYAG	1 cut(s)	723
BstUI	CGCG	2 cut(s)	81, 1113
BstV1I	GCAGC	1 cut(s)	755
BstV2I	GAAGAC	1 cut(s)	1110
BstX2I	RGATCY	3 cut(s)	124, 644, 905
BstYI	RGATCY	3 cut(s)	124, 644, 905
Bsu15I	ATCGAT	2 cut(s)	93, 388
Bsu36I	CCTNAGG	1 cut(s)	991
BsuRI	GGCC	2 cut(s)	667, 1028
BsuTUI	ATCGAT	2 cut(s)	93, 388
BtsCI	GGATG	6 cut(s)	313, 323, 706, 1021, 1139, 1186
BtsI	GCAGTG	1 cut(s)	217
BtsIMutI	CAGTG	3 cut(s)	217, 840, 1095
Cac8I	GCNNGC	3 cut(s)	665, 669, 1145
CciI	TCATGA	2 cut(s)	454, 697
ClaI	ATCGAT	2 cut(s)	93, 388
CseI	GACGC	1 cut(s)	677
CsiI	ACCWGGT	1 cut(s)	1192
Csp6I	GTAC	2 cut(s)	98, 405
CviAII	CATG	7 cut(s)	258, 289, 455, 698, 803, 985, 1177
CviQI	GTAC	2 cut(s)	98, 405
DdeI	CTNAG	5 cut(s)	177, 363, 447, 512, 991
EaeI	YGGCCR	1 cut(s)	1026
Eam1104I	CTCTTC	1 cut(s)	1074
EarI	CTCTTC	1 cut(s)	1074
Eco130I	CCWWGG	1 cut(s)	761
Eco24I	GRGCYC	1 cut(s)	560
Eco57I	CTGAAG	1 cut(s)	1119
Eco81I	CCTNAGG	1 cut(s)	991
EcoRII	CCWGG	2 cut(s)	781, 1192
EcoT14I	CCWWGG	1 cut(s)	761
EcoT38I	GRGCYC	1 cut(s)	560
ErhI	CCWWGG	1 cut(s)	761
FaeI	CATG	7 cut(s)	261, 292, 458, 701, 806, 988, 1180
FalI	AAGNNNNNCTT	2 cut(s)	495, 527
FatI	CATG	7 cut(s)	257, 288, 454, 697, 802, 984, 1176
FbaI	TGATCA	1 cut(s)	694
Fnu4HI	GCNGC	1 cut(s)	744
FokI	GGATG	6 cut(s)	310, 320, 693, 1028, 1146, 1193
FriOI	GRGCYC	1 cut(s)	560
Fsp4HI	GCNGC	1 cut(s)	744
GluI	GCNGC	1 cut(s)	744
HaeIII	GGCC	2 cut(s)	667, 1028
HgaI	GACGC	1 cut(s)	677
Hin1I	GRCGYC	1 cut(s)	688
Hin1II	CATG	7 cut(s)	261, 292, 458, 701, 806, 988, 1180
HinfI	GANTC	7 cut(s)	116, 193, 421, 590, 778, 861, 1052
HphI	GGTGA	5 cut(s)	94, 128, 143, 803, 857
Hpy166II	GTNNAC	1 cut(s)	405
Hpy188I	TCNGA	6 cut(s)	13, 203, 396, 905, 960, 1078
Hpy188III	TCNNGA	7 cut(s)	224, 266, 455, 692, 698, 974, 1013
Hpy8I	GTNNAC	1 cut(s)	405
HpyAV	CCTTC	1 cut(s)	924
HpyCH4III	ACNGT	3 cut(s)	546, 791, 835
HpyCH4V	TGCA	5 cut(s)	601, 716, 743, 881, 1147
HpyF10VI	GCNNNNNNNGC	3 cut(s)	78, 734, 743
HpyF3I	CTNAG	5 cut(s)	177, 363, 447, 512, 991
Hsp92I	GRCGYC	1 cut(s)	688
Hsp92II	CATG	7 cut(s)	261, 292, 458, 701, 806, 988, 1180
Ksp22I	TGATCA	1 cut(s)	694
LmnI	GCTCC	1 cut(s)	522
Lsp1109I	GCAGC	1 cut(s)	755
LweI	GCATC	2 cut(s)	460, 724
MabI	ACCWGGT	1 cut(s)	1192
MaeIII	GTNAC	3 cut(s)	532, 754, 845
MbiI	CCGCTC	1 cut(s)	251
MflI	RGATCY	3 cut(s)	124, 644, 905
MhlI	GDGCHC	1 cut(s)	560
MlsI	TGGCCA	1 cut(s)	1028
MluCI	AATT	5 cut(s)	55, 602, 766, 839, 1061
MluNI	TGGCCA	1 cut(s)	1028
MlyI	GAGTC	1 cut(s)	772
MmeI	TCCRAC	3 cut(s)	36, 419, 1080
MnlI	CCTC	9 cut(s)	70, 209, 293, 411, 455, 513, 720, 889, 1202
Mox20I	TGGCCA	1 cut(s)	1028
MroXI	GAANNNNTTC	2 cut(s)	507, 1088
MscI	TGGCCA	1 cut(s)	1028
MseI	TTAA	5 cut(s)	231, 284, 438, 674, 920
MslI	CAYNNNNRTG	2 cut(s)	833, 1047
Msp20I	TGGCCA	1 cut(s)	1028
MspR9I	CCNGG	2 cut(s)	783, 1194
MvaI	CCWGG	2 cut(s)	783, 1194
MvnI	CGCG	2 cut(s)	81, 1113
MwoI	GCNNNNNNNGC	3 cut(s)	78, 734, 743
NlaIII	CATG	7 cut(s)	261, 292, 458, 701, 806, 988, 1180
NlaIV	GGNNCC	1 cut(s)	646
NmuCI	GTSAC	2 cut(s)	532, 845
NspI	RCATGY	1 cut(s)	988
PagI	TCATGA	2 cut(s)	454, 697
PdmI	GAANNNNTTC	2 cut(s)	507, 1088
PfeI	GAWTC	6 cut(s)	116, 193, 421, 590, 861, 1052
PfoI	TCCNGGA	1 cut(s)	781
PkrI	GCNGC	1 cut(s)	745
PleI	GAGTC	1 cut(s)	772
PpsI	GAGTC	1 cut(s)	772
Psp6I	CCWGG	2 cut(s)	781, 1192
PspGI	CCWGG	2 cut(s)	781, 1192
PspN4I	GGNNCC	1 cut(s)	646
PsuI	RGATCY	3 cut(s)	124, 644, 905
RsaI	GTAC	2 cut(s)	99, 406
RsaNI	GTAC	2 cut(s)	98, 405
RseI	CAYNNNNRTG	2 cut(s)	833, 1047
SaqAI	TTAA	5 cut(s)	231, 284, 438, 674, 920
SatI	GCNGC	1 cut(s)	744
SchI	GAGTC	1 cut(s)	772
ScrFI	CCNGG	2 cut(s)	783, 1194
SduI	GDGCHC	1 cut(s)	560
SexAI	ACCWGGT	1 cut(s)	1192
SfaNI	GCATC	2 cut(s)	460, 724
SfcI	CTRYAG	1 cut(s)	723
SmiMI	CAYNNNNRTG	2 cut(s)	833, 1047
Sse9I	AATT	5 cut(s)	55, 602, 766, 839, 1061
SsiI	CCGC	2 cut(s)	251, 1111
StyD4I	CCNGG	2 cut(s)	781, 1192
StyI	CCWWGG	1 cut(s)	761
TaaI	ACNGT	3 cut(s)	546, 791, 835
TaqI	TCGA	5 cut(s)	93, 388, 928, 1126, 1207
TaqII	GACCGA	1 cut(s)	993
TasI	AATT	5 cut(s)	55, 602, 766, 839, 1061
TatI	WGTACW	2 cut(s)	97, 404
TfiI	GAWTC	6 cut(s)	116, 193, 421, 590, 861, 1052
Tru1I	TTAA	5 cut(s)	231, 284, 438, 674, 920
Tru9I	TTAA	5 cut(s)	231, 284, 438, 674, 920
TscAI	CASTG	3 cut(s)	217, 840, 1102
TseFI	GTSAC	2 cut(s)	532, 845
TseI	GCWGC	1 cut(s)	743
Tsp45I	GTSAC	2 cut(s)	532, 845
TspDTI	ATGAA	2 cut(s)	966, 1065
TspGWI	ACGGA	3 cut(s)	284, 637, 998
TspRI	CASTG	3 cut(s)	217, 840, 1102
XapI	RAATTY	1 cut(s)	839
XceI	RCATGY	1 cut(s)	988
XmnI	GAANNNNTTC	2 cut(s)	507, 1088

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.