Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0013235

Physical Location & Seq

Genomic Coordinates Forward (+)

54342472 .. 54345846

Gene Structure 3375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00373080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGTATTTGTCCGAAAAGCCTCACCCGGTTGATTTTCACAAAGGGGATGAAGGAGGCGAGGACATGATGATTGAGGTGGTTCCGAATGAGGATGTTTCCCTAACCCATCACCGGAATCAGCATCAGCAGCAGCACCAATTGCTGCTTCTGGGGGATAGCAGCGGCAGTGGGGAGGACCACGAAGCTAAGCCCCAGAAAAAGAGAGCCGAAACTTGGGTGCAGGATGAGACTCGGAGTTTGATAGCTCTGCGCCGAGAAATGGACAGCATGTTCAACACTTCCAAGTCCAACAAGCACCTGTGGGAGCAGATTTCGGCGAAAATGAGGGAGAAAGGGTTCGACCGCAATCCCAATATGTGCACTGACAAGTGGAGGAACTTGCTTAAGGAGTTCAAGAAGGCTAAGCATAATCATGACAGGGGGAGTGGCTCGGCTAAGATGTCATATTATAAAGAGATTGAGGAGATTTTGAAAGAAAGAAACAAGAATGCTCAGTACAAAAGCCCTACTCCGCCCAAGGTTGATTCTTTTATGCAGTTCTCAGATAAAGGGATGGAAGATACAAACATTTCCTTTGCACATGTGGAAGCTAATGGCAGGCCAACACTCAATCTCGAGACAGGTTTGGACCATGATGGTCATCCTCTTGCCATTACTGCTGCTGATGCAGTTGCAGCAAATGGAGTTGCACCTTGGAATTGGAGAGAGACCCCTGAAAATGGTGGGGAGAATCAATCATATGGCGGGAGAGTCATAGTAGTAACCTGGGGTGATTATACTCGGAGGATTGGAATTGATGGCTCGGCAGATGCCATTAAGGAGGCCATCAAGTCTGCTTTTAGGTTGAGAACAAAACGCGCCTTCTGGTTGGAGGATGAAGACCAAATTGTCCGAAGTCTTGACAGGGACATGCCTCTGGGAAATTACACCCTTCATCTTGACGAAGGGTTGGCTGTAAAAGTGTGTCTGTATGATGAGCCAGAAAACATACCCGTACATACAGAGGAGAAGATTTTTTACACCGAAGATGATTATCATGAATTCCTAACCCGCCGTGGGTGGACATGTTTGCGGGAGTTTGATGGGTACAGAAATATTGAAAATATGGATGATCTTCGACCTGGTGCAATATATCGTGGTGTGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

382

Amino Acids

43.95

Weight (kDa)

5.63

Isoelectric Point (pI)

46.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	71 - 156	6.5e-22	Myb/SANT-like DNA-binding domain
Ubiquitin_GT-1	PF26214	250 - 310	9.2e-09	GT-1-like, ubiquitin-like domain
Ubiquitin_GT-1	PF26214	315 - 380	8.3e-34	GT-1-like, ubiquitin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13450 AT3G25990
fragaria_vesca	FvH4_4g24610 FvH4_4g24610
malus_domestica	MD13G1109800.v1.1 MD16G1109700.v1.1
prunus_persica	Prupe.1G235200_v2.0.a1
pyrus_communis	pycom13g09560
rosa_chinensis	RchiOBHm_Chr4g0431621
rosa_laevigata	RLG00000006903
rosa_multiflora	Rmu_ssc0000487.1_g000003
rosa_roxburghii	Rroxscaffold_5G00373080
rosa_rugosa	Rorug04G0251400
rosa_samantha	Rh4AG308000 Rh4BG315600 Rh4CG331100 Rh4DG310600
rosa_wichuraiana	Rw4G026710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	450
AasI	GACNNNNNNGTC	1 cut(s)	887
AccII	CGCG	1 cut(s)	858
AciI	CCGC	6 cut(s)	162, 343, 512, 744, 1051, 1072
AcsI	RAATTY	1 cut(s)	1040
AfaI	GTAC	3 cut(s)	497, 996, 1088
AfiI	CCNNNNNNNGG	5 cut(s)	111, 213, 259, 719, 1056
AflII	CTTAAG	1 cut(s)	383
AflIII	ACRYGT	2 cut(s)	580, 1064
AgsI	TTSAA	4 cut(s)	274, 394, 472, 1100
AjnI	CCWGG	2 cut(s)	764, 1120
AjuI	GAANNNNNNNTTGG	2 cut(s)	129, 161
AloI	GAACNNNNNNTCC	4 cut(s)	254, 286, 320, 352
AluBI	AGCT	3 cut(s)	185, 245, 590
AluI	AGCT	3 cut(s)	185, 245, 590
Alw21I	GWGCWC	1 cut(s)	362
Alw26I	GTCTC	3 cut(s)	221, 611, 701
Alw44I	GTGCAC	1 cut(s)	358
Ama87I	CYCGRG	1 cut(s)	614
AoxI	GGCC	2 cut(s)	599, 822
ApaLI	GTGCAC	1 cut(s)	358
ApeKI	GCWGC	6 cut(s)	127, 130, 142, 159, 659, 674
ApoI	RAATTY	1 cut(s)	1040
ArsI	GACNNNNNNTTYG	2 cut(s)	220, 252
Asp700I	GAANNNNTTC	1 cut(s)	335
AspLEI	GCGC	2 cut(s)	252, 860
AspS9I	GGNCC	2 cut(s)	175, 628
AsuC2I	CCSGG	1 cut(s)	26
AsuHPI	GGTGA	3 cut(s)	14, 101, 782
AvaI	CYCGRG	1 cut(s)	614
AvaII	GGWCC	2 cut(s)	175, 628
BaeGI	GKGCMC	1 cut(s)	362
BarI	GAAGNNNNNNTAC	2 cut(s)	1001, 1033
BbsI	GAAGAC	1 cut(s)	885
Bbv12I	GWGCWC	1 cut(s)	362
BbvI	GCAGC	6 cut(s)	129, 139, 142, 171, 646, 686
BccI	CCATC	6 cut(s)	114, 547, 629, 791, 833, 1076
BceAI	ACGGC	1 cut(s)	1038
BciT130I	CCWGG	2 cut(s)	766, 1122
BcnI	CCSGG	1 cut(s)	26
BcoDI	GTCTC	3 cut(s)	221, 611, 701
BfrI	CTTAAG	1 cut(s)	383
BisI	GCNGC	7 cut(s)	128, 131, 143, 160, 163, 660, 675
BlpI	GCTNAGC	2 cut(s)	186, 402
BlsI	GCNGC	7 cut(s)	129, 132, 144, 161, 164, 661, 676
Bme1390I	CCNGG	3 cut(s)	26, 766, 1122
Bme18I	GGWCC	2 cut(s)	175, 628
BmeT110I	CYCGRG	1 cut(s)	614
BmgT120I	GGNCC	2 cut(s)	175, 628
BmiI	GGNNCC	1 cut(s)	81
BmrFI	CCNGG	3 cut(s)	26, 766, 1122
BmsI	GCATC	3 cut(s)	130, 655, 799
BpiI	GAAGAC	1 cut(s)	885
Bpu1102I	GCTNAGC	2 cut(s)	186, 402
BpuMI	CCSGG	1 cut(s)	26
BsaBI	GATNNNNATC	2 cut(s)	639, 1032
BsaI	GGTCTC	1 cut(s)	701
BsaJI	CCNNGG	4 cut(s)	516, 692, 765, 1054
BsaWI	WCCGGW	1 cut(s)	111
BsaXI	ACNNNNNCTCC	2 cut(s)	320, 350
Bsc4I	CCNNNNNNNGG	5 cut(s)	111, 213, 259, 719, 1056
Bse8I	GATNNNNATC	2 cut(s)	639, 1032
BseBI	CCWGG	2 cut(s)	766, 1122
BseDI	CCNNGG	4 cut(s)	516, 692, 765, 1054
BseGI	GGATG	7 cut(s)	52, 97, 229, 558, 640, 880, 1114
BseJI	GATNNNNATC	2 cut(s)	639, 1032
BseLI	CCNNNNNNNGG	5 cut(s)	111, 213, 259, 719, 1056
BseMII	CTCAG	2 cut(s)	506, 555
BseRI	GAGGAG	2 cut(s)	476, 1019
BseSI	GKGCMC	1 cut(s)	362
BseXI	GCAGC	6 cut(s)	129, 139, 142, 171, 646, 686
BsgI	GTGCAG	1 cut(s)	239
Bsh1236I	CGCG	1 cut(s)	858
Bsh1285I	CGRYCG	1 cut(s)	343
BshFI	GGCC	2 cut(s)	601, 824
BsiEI	CGRYCG	1 cut(s)	343
BsiHKAI	GWGCWC	1 cut(s)	362
BsiHKCI	CYCGRG	1 cut(s)	614
BsiSI	CCGG	2 cut(s)	26, 112
BslFI	GGGAC	1 cut(s)	920
BslI	CCNNNNNNNGG	5 cut(s)	111, 213, 259, 719, 1056
BsmAI	GTCTC	3 cut(s)	221, 611, 701
BsmFI	GGGAC	1 cut(s)	920
BsmI	GAATGC	1 cut(s)	493
BsnI	GGCC	2 cut(s)	601, 824
Bso31I	GGTCTC	1 cut(s)	701
BsoBI	CYCGRG	1 cut(s)	614
Bsp1286I	GDGCHC	1 cut(s)	362
Bsp143I	GATC	1 cut(s)	1111
Bsp1720I	GCTNAGC	2 cut(s)	186, 402
BspACI	CCGC	6 cut(s)	162, 343, 512, 744, 1051, 1072
BspANI	GGCC	2 cut(s)	601, 824
BspCNI	CTCAG	2 cut(s)	505, 554
BspFNI	CGCG	1 cut(s)	858
BspHI	TCATGA	2 cut(s)	412, 1036
BspLI	GGNNCC	1 cut(s)	81
BspTI	CTTAAG	1 cut(s)	383
BspTNI	GGTCTC	1 cut(s)	701
BssECI	CCNNGG	4 cut(s)	516, 692, 765, 1054
BssMI	GATC	1 cut(s)	1111
BssT1I	CCWWGG	2 cut(s)	516, 692
Bst2UI	CCWGG	2 cut(s)	766, 1122
BstAFI	CTTAAG	1 cut(s)	383
BstAPI	GCANNNNNTGC	1 cut(s)	139
BstC8I	GCNNGC	1 cut(s)	599
BstDEI	CTNAG	5 cut(s)	186, 402, 435, 492, 541
BstDSI	CCRYGG	1 cut(s)	1054
BstF5I	GGATG	7 cut(s)	52, 97, 229, 558, 640, 880, 1114
BstFNI	CGCG	1 cut(s)	858
BstHHI	GCGC	2 cut(s)	252, 860
BstKTI	GATC	1 cut(s)	1114
BstMAI	GTCTC	3 cut(s)	221, 611, 701
BstMBI	GATC	1 cut(s)	1111
BstMCI	CGRYCG	1 cut(s)	343
BstMWI	GCNNNNNNNGC	5 cut(s)	127, 139, 656, 665, 674
BstNI	CCWGG	2 cut(s)	766, 1122
BstNSI	RCATGY	4 cut(s)	271, 584, 913, 1068
BstSCI	CCNGG	3 cut(s)	24, 764, 1120
BstSLI	GKGCMC	1 cut(s)	362
BstUI	CGCG	1 cut(s)	858
BstV1I	GCAGC	6 cut(s)	129, 139, 142, 171, 646, 686
BstV2I	GAAGAC	1 cut(s)	885
BsuRI	GGCC	2 cut(s)	601, 824
BtgI	CCRYGG	1 cut(s)	1054
BtsCI	GGATG	7 cut(s)	52, 97, 229, 558, 640, 880, 1114
BtsI	GCAGTG	1 cut(s)	172
BtsIMutI	CAGTG	2 cut(s)	172, 360
Cac8I	GCNNGC	1 cut(s)	599
CciI	TCATGA	2 cut(s)	412, 1036
CfoI	GCGC	2 cut(s)	252, 860
Cfr13I	GGNCC	2 cut(s)	175, 628
CsiI	ACCWGGT	1 cut(s)	1120
Csp6I	GTAC	3 cut(s)	496, 995, 1087
CviAII	CATG	8 cut(s)	64, 268, 413, 581, 632, 910, 1037, 1065
CviQI	GTAC	3 cut(s)	496, 995, 1087
DdeI	CTNAG	5 cut(s)	186, 402, 435, 492, 541
DpnI	GATC	1 cut(s)	1113
DpnII	GATC	1 cut(s)	1111
DrdI	GACNNNNNNGTC	1 cut(s)	887
DseDI	GACNNNNNNGTC	1 cut(s)	887
EciI	GGCGGA	1 cut(s)	501
Eco130I	CCWWGG	2 cut(s)	516, 692
Eco31I	GGTCTC	1 cut(s)	701
Eco47I	GGWCC	2 cut(s)	175, 628
Eco88I	CYCGRG	1 cut(s)	614
EcoRI	GAATTC	1 cut(s)	1040
EcoRII	CCWGG	2 cut(s)	764, 1120
EcoT14I	CCWWGG	2 cut(s)	516, 692
ErhI	CCWWGG	2 cut(s)	516, 692
FaeI	CATG	8 cut(s)	67, 271, 416, 584, 635, 913, 1040, 1068
FaqI	GGGAC	1 cut(s)	920
FatI	CATG	8 cut(s)	63, 267, 412, 580, 631, 909, 1036, 1064
FauI	CCCGC	3 cut(s)	737, 1058, 1065
FauNDI	CATATG	1 cut(s)	739
Fnu4HI	GCNGC	7 cut(s)	128, 131, 143, 160, 163, 660, 675
FokI	GGATG	7 cut(s)	59, 104, 236, 565, 627, 887, 1121
Fsp4HI	GCNGC	7 cut(s)	128, 131, 143, 160, 163, 660, 675
GlaI	GCGC	2 cut(s)	251, 859
GluI	GCNGC	7 cut(s)	128, 131, 143, 160, 163, 660, 675
HaeIII	GGCC	2 cut(s)	601, 824
HapII	CCGG	2 cut(s)	26, 112
HhaI	GCGC	2 cut(s)	252, 860
Hin1II	CATG	8 cut(s)	67, 271, 416, 584, 635, 913, 1040, 1068
Hin6I	GCGC	2 cut(s)	250, 858
HinP1I	GCGC	2 cut(s)	250, 858
HinfI	GANTC	5 cut(s)	115, 229, 524, 730, 750
HpaII	CCGG	2 cut(s)	26, 112
HphI	GGTGA	3 cut(s)	14, 101, 782
Hpy166II	GTNNAC	2 cut(s)	360, 1062
Hpy188I	TCNGA	6 cut(s)	13, 84, 234, 544, 783, 893
Hpy188III	TCNNGA	7 cut(s)	394, 413, 614, 616, 899, 938, 1037
Hpy8I	GTNNAC	2 cut(s)	360, 1062
HpyAV	CCTTC	5 cut(s)	44, 391, 871, 938, 941
HpyCH4V	TGCA	8 cut(s)	220, 360, 535, 578, 668, 674, 689, 1127
HpyF10VI	GCNNNNNNNGC	5 cut(s)	127, 139, 656, 665, 674
HpyF3I	CTNAG	5 cut(s)	186, 402, 435, 492, 541
Hsp92II	CATG	8 cut(s)	67, 271, 416, 584, 635, 913, 1040, 1068
HspAI	GCGC	2 cut(s)	250, 858
Kzo9I	GATC	1 cut(s)	1111
LmnI	GCTCC	1 cut(s)	304
Lsp1109I	GCAGC	6 cut(s)	129, 139, 142, 171, 646, 686
LweI	GCATC	3 cut(s)	130, 655, 799
MabI	ACCWGGT	1 cut(s)	1120
MaeIII	GTNAC	1 cut(s)	760
MalI	GATC	1 cut(s)	1113
MboI	GATC	1 cut(s)	1111
MboII	GAAGA	5 cut(s)	569, 890, 1021, 1037, 1106
MfeI	CAATTG	1 cut(s)	137
MhlI	GDGCHC	1 cut(s)	362
MluCI	AATT	6 cut(s)	137, 697, 792, 885, 922, 1040
MlyI	GAGTC	2 cut(s)	223, 759
MmeI	TCCRAC	2 cut(s)	312, 849
MroXI	GAANNNNTTC	1 cut(s)	335
MseI	TTAA	2 cut(s)	384, 816
MslI	CAYNNNNRTG	1 cut(s)	411
MspA1I	CMGCKG	1 cut(s)	162
MspCI	CTTAAG	1 cut(s)	383
MspI	CCGG	2 cut(s)	26, 112
MspR9I	CCNGG	3 cut(s)	26, 766, 1122
MunI	CAATTG	1 cut(s)	137
Mva1269I	GAATGC	1 cut(s)	493
MvaI	CCWGG	2 cut(s)	766, 1122
MvnI	CGCG	1 cut(s)	858
MwoI	GCNNNNNNNGC	5 cut(s)	127, 139, 656, 665, 674
NciI	CCSGG	1 cut(s)	26
NdeI	CATATG	1 cut(s)	739
NdeII	GATC	1 cut(s)	1111
NlaIII	CATG	8 cut(s)	67, 271, 416, 584, 635, 913, 1040, 1068
NlaIV	GGNNCC	1 cut(s)	81
NmeAIII	GCCGAG	3 cut(s)	278, 410, 782
NspI	RCATGY	4 cut(s)	271, 584, 913, 1068
PaeR7I	CTCGAG	1 cut(s)	614
PagI	TCATGA	2 cut(s)	412, 1036
PciI	ACATGT	2 cut(s)	580, 1064
PctI	GAATGC	1 cut(s)	493
PdmI	GAANNNNTTC	1 cut(s)	335
PfeI	GAWTC	3 cut(s)	115, 524, 730
PkrI	GCNGC	7 cut(s)	129, 132, 144, 161, 164, 661, 676
PleI	GAGTC	2 cut(s)	223, 758
PpsI	GAGTC	2 cut(s)	223, 758
PscI	ACATGT	2 cut(s)	580, 1064
PsiI	TTATAA	1 cut(s)	450
Psp6I	CCWGG	2 cut(s)	764, 1120
PspGI	CCWGG	2 cut(s)	764, 1120
PspN4I	GGNNCC	1 cut(s)	81
PspPI	GGNCC	2 cut(s)	175, 628
RsaI	GTAC	3 cut(s)	497, 996, 1088
RsaNI	GTAC	3 cut(s)	496, 995, 1087
RseI	CAYNNNNRTG	1 cut(s)	411
SaqAI	TTAA	2 cut(s)	384, 816
SatI	GCNGC	7 cut(s)	128, 131, 143, 160, 163, 660, 675
Sau3AI	GATC	1 cut(s)	1111
Sau96I	GGNCC	2 cut(s)	175, 628
SchI	GAGTC	2 cut(s)	223, 759
ScrFI	CCNGG	3 cut(s)	26, 766, 1122
SduI	GDGCHC	1 cut(s)	362
SexAI	ACCWGGT	1 cut(s)	1120
SfaNI	GCATC	3 cut(s)	130, 655, 799
Sfr274I	CTCGAG	1 cut(s)	614
SinI	GGWCC	2 cut(s)	175, 628
SlaI	CTCGAG	1 cut(s)	614
SmiMI	CAYNNNNRTG	1 cut(s)	411
SmlI	CTYRAG	2 cut(s)	383, 614
SmoI	CTYRAG	2 cut(s)	383, 614
Sse9I	AATT	6 cut(s)	137, 697, 792, 885, 922, 1040
SsiI	CCGC	6 cut(s)	162, 343, 512, 744, 1051, 1072
SspI	AATATT	1 cut(s)	1096
StyD4I	CCNGG	3 cut(s)	24, 764, 1120
StyI	CCWWGG	2 cut(s)	516, 692
TaqI	TCGA	3 cut(s)	339, 615, 1117
TasI	AATT	6 cut(s)	137, 697, 792, 885, 922, 1040
TatI	WGTACW	1 cut(s)	495
TauI	GCSGC	1 cut(s)	165
TfiI	GAWTC	3 cut(s)	115, 524, 730
Tru1I	TTAA	2 cut(s)	384, 816
Tru9I	TTAA	2 cut(s)	384, 816
TscAI	CASTG	2 cut(s)	172, 367
TseI	GCWGC	6 cut(s)	127, 130, 142, 159, 659, 674
TspDTI	ATGAA	4 cut(s)	63, 891, 923, 1053
TspRI	CASTG	2 cut(s)	172, 367
Vha464I	CTTAAG	1 cut(s)	383
VneI	GTGCAC	1 cut(s)	358
VpaK11BI	GGWCC	2 cut(s)	175, 628
XapI	RAATTY	1 cut(s)	1040
XceI	RCATGY	4 cut(s)	271, 584, 913, 1068
XhoI	CTCGAG	1 cut(s)	614
XmnI	GAANNNNTTC	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.