Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013235

Physical Location & Seq

Genomic Coordinates Forward (+)

24892813 .. 24897195

Gene Structure 4383 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G235200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGTACTTGTCGGAAAAGCCTCGAGCAATCGATTTTTACAAAGAGGAAGGCAGCCGAGACATGATGATTGAGGTGGTTTCCAATGACGACCTCTCTCAATCTCAAACTCATCACCCCAACCATCAACCACAGCAGCAGCAGCAGCAGATGCTTTTGGGGGAAAGCAGCGGCGAGGACCATGAAGTTAAGGCCCCGAAGAAGCGAGCCGAGACTTGGGTCCAAGACGAGACTCGGAGTTTGATAGCTCTGCGCCGTGAAATGGACGGTTTGTTTAACACTTCCAAGTCTAACAAGCACTTGTGGGAGCAGATTTCGGCTAAGATGAGAGAGAAAGGGTTCGATCGGTCTCCTACTATGTGCACCGACAAGTGGAGAAACTTGCTTAAAGAGTTCAAAAAGGCTAAGCACCATGACAGGGGAAGTGGGTCAGCTAAGATGTCATATTACAAGGAGATTGAGGAGATTTTGAAAGAGCGAAACAAGAACGCGCAGTACAAAAGTCCCACACCTCCAAAGGTTGATTCTTTTATGCAATTCTCGGACAAAGGTATTGAAGATGCAAGCATTTCTTTTGCACCTGTTGAAGCTAGTGGGAGGCCAACGCTCAATCTGGAACGACGTTTGGATCATGATGGTCATCCTCTTGCCATAACTGCAGCTGATGCAGTTACAGCGAGTGGAGTTCCACCTTGGAATTGGAGAGAAACCCCTGGAAATGGTGGGGAGGGTCAATCATGTGGTAGAGTCATATTAGTCACTTGGGGTGATTATACTAGAAGGATTGGTATTGATGGAACTGCCGATGCCATTAAGGAGGCAATTAAGTCTGCTTTTAGGTTGAGAACAAAACGTGCCTTCTGGTTGGAGGATGAAGACCAGATAGTCCGCAGTCTTGACAGGGACATGCCTCTGGGGAATTACACCCTTCATCTTGATGAAGGGGTGGCCATCAAACTGTGCCTCTATGATGAGTCAGACCATATACCAGTACATACAGAGGAGAAGATTTTCTACACTGAAGATGATTATCGTGATTTTCTGACCCGCCGGGGGTGGTCATGTCTGAGGGAGTTTGATGGGTACAGAAATATTGAAAATATGGATGATCTTCGACCTGGTGCAATATACCGTGGTGTGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

381

Amino Acids

43.75

Weight (kDa)

5.9

Isoelectric Point (pI)

57.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13450 AT3G25990
fragaria_vesca	FvH4_4g24610 FvH4_4g24610
malus_domestica	MD13G1109800.v1.1 MD16G1109700.v1.1
prunus_persica	Prupe.1G235200_v2.0.a1
pyrus_communis	pycom13g09560
rosa_chinensis	RchiOBHm_Chr4g0431621
rosa_laevigata	RLG00000006903
rosa_multiflora	Rmu_ssc0000487.1_g000003
rosa_roxburghii	Rroxscaffold_5G00373080
rosa_rugosa	Rorug04G0251400
rosa_samantha	Rh4AG308000 Rh4BG315600 Rh4CG331100 Rh4DG310600
rosa_wichuraiana	Rw4G026710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	881
AccII	CGCG	1 cut(s)	488
AciI	CCGC	3 cut(s)	168, 886, 1045
AclWI	GGATC	1 cut(s)	633
AcoI	YGGCCR	1 cut(s)	945
AcuI	CTGAAG	1 cut(s)	1038
AfaI	GTAC	4 cut(s)	5, 494, 990, 1082
AfiI	CCNNNNNNNGG	6 cut(s)	213, 259, 369, 415, 716, 1050
AgsI	TTSAA	5 cut(s)	394, 469, 554, 584, 1094
AjnI	CCWGG	2 cut(s)	709, 1114
AjuI	GAANNNNNNNTTGG	2 cut(s)	505, 537
AluBI	AGCT	4 cut(s)	245, 431, 587, 659
AluI	AGCT	4 cut(s)	245, 431, 587, 659
Alw21I	GWGCWC	1 cut(s)	362
Alw26I	GTCTC	4 cut(s)	51, 203, 221, 351
Alw44I	GTGCAC	1 cut(s)	358
AlwI	GGATC	1 cut(s)	633
Ama87I	CYCGRG	1 cut(s)	21
AoxI	GGCC	3 cut(s)	189, 596, 945
ApaLI	GTGCAC	1 cut(s)	358
ApeKI	GCWGC	7 cut(s)	51, 133, 136, 139, 142, 165, 656
ArsI	GACNNNNNNTTYG	2 cut(s)	220, 252
Asp700I	GAANNNNTTC	2 cut(s)	335, 1007
AspLEI	GCGC	2 cut(s)	252, 490
AspS9I	GGNCC	3 cut(s)	175, 190, 217
AsuC2I	CCSGG	1 cut(s)	1049
AsuHPI	GGTGA	2 cut(s)	104, 776
AvaI	CYCGRG	1 cut(s)	21
AvaII	GGWCC	2 cut(s)	175, 217
BaeGI	GKGCMC	1 cut(s)	362
BalI	TGGCCA	1 cut(s)	947
BarI	GAAGNNNNNNTAC	2 cut(s)	995, 1027
BbsI	GAAGAC	1 cut(s)	879
Bbv12I	GWGCWC	1 cut(s)	362
BbvI	GCAGC	7 cut(s)	63, 145, 148, 151, 154, 177, 668
BccI	CCATC	5 cut(s)	129, 626, 785, 956, 1070
BceAI	ACGGC	1 cut(s)	237
BciT130I	CCWGG	2 cut(s)	711, 1116
BcnI	CCSGG	1 cut(s)	1049
BcoDI	GTCTC	4 cut(s)	51, 203, 221, 351
BfaI	CTAG	2 cut(s)	588, 774
BfmI	CTRYAG	1 cut(s)	654
BisI	GCNGC	8 cut(s)	52, 134, 137, 140, 143, 166, 169, 657
BlpI	GCTNAGC	1 cut(s)	402
BlsI	GCNGC	8 cut(s)	53, 135, 138, 141, 144, 167, 170, 658
Bme1390I	CCNGG	3 cut(s)	711, 1049, 1116
Bme18I	GGWCC	2 cut(s)	175, 217
BmeT110I	CYCGRG	1 cut(s)	21
BmgT120I	GGNCC	3 cut(s)	175, 190, 217
BmiI	GGNNCC	2 cut(s)	192, 218
BmrFI	CCNGG	3 cut(s)	711, 1049, 1116
BmsI	GCATC	4 cut(s)	138, 547, 652, 793
BoxI	GACNNNNGTC	1 cut(s)	215
BpiI	GAAGAC	1 cut(s)	879
Bpu1102I	GCTNAGC	1 cut(s)	402
BpuMI	CCSGG	1 cut(s)	1049
Bsa29I	ATCGAT	1 cut(s)	30
BsaBI	GATNNNNATC	2 cut(s)	636, 1026
BsaI	GGTCTC	1 cut(s)	351
BsaJI	CCNNGG	4 cut(s)	689, 709, 1048, 1129
Bsc4I	CCNNNNNNNGG	6 cut(s)	213, 259, 369, 415, 716, 1050
Bse1I	ACTGG	1 cut(s)	986
Bse8I	GATNNNNATC	2 cut(s)	636, 1026
BseBI	CCWGG	2 cut(s)	711, 1116
BseCI	ATCGAT	1 cut(s)	30
BseDI	CCNNGG	4 cut(s)	689, 709, 1048, 1129
BseGI	GGATG	3 cut(s)	637, 874, 1108
BseJI	GATNNNNATC	2 cut(s)	636, 1026
BseLI	CCNNNNNNNGG	6 cut(s)	213, 259, 369, 415, 716, 1050
BseMII	CTCAG	1 cut(s)	1055
BseNI	ACTGG	1 cut(s)	986
BseRI	GAGGAG	2 cut(s)	473, 1013
BseSI	GKGCMC	1 cut(s)	362
BseXI	GCAGC	7 cut(s)	63, 145, 148, 151, 154, 177, 668
Bsh1236I	CGCG	1 cut(s)	488
Bsh1285I	CGRYCG	1 cut(s)	343
BshFI	GGCC	3 cut(s)	191, 598, 947
BshVI	ATCGAT	1 cut(s)	30
BsiEI	CGRYCG	1 cut(s)	343
BsiHKAI	GWGCWC	1 cut(s)	362
BsiHKCI	CYCGRG	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	1048
BslFI	GGGAC	2 cut(s)	486, 914
BslI	CCNNNNNNNGG	6 cut(s)	213, 259, 369, 415, 716, 1050
BsmAI	GTCTC	4 cut(s)	51, 203, 221, 351
BsmFI	GGGAC	2 cut(s)	486, 914
BsnI	GGCC	3 cut(s)	191, 598, 947
Bso31I	GGTCTC	1 cut(s)	351
BsoBI	CYCGRG	1 cut(s)	21
Bsp1286I	GDGCHC	1 cut(s)	362
Bsp143I	GATC	3 cut(s)	340, 625, 1105
Bsp1720I	GCTNAGC	1 cut(s)	402
BspACI	CCGC	3 cut(s)	168, 886, 1045
BspANI	GGCC	3 cut(s)	191, 598, 947
BspCNI	CTCAG	1 cut(s)	1056
BspDI	ATCGAT	1 cut(s)	30
BspFNI	CGCG	1 cut(s)	488
BspHI	TCATGA	1 cut(s)	628
BspLI	GGNNCC	2 cut(s)	192, 218
BspMAI	CTGCAG	1 cut(s)	658
BspPI	GGATC	1 cut(s)	633
BspTNI	GGTCTC	1 cut(s)	351
BsrI	ACTGG	1 cut(s)	986
BssECI	CCNNGG	4 cut(s)	689, 709, 1048, 1129
BssMI	GATC	3 cut(s)	340, 625, 1105
BssT1I	CCWWGG	1 cut(s)	689
Bst2UI	CCWGG	2 cut(s)	711, 1116
Bst4CI	ACNGT	3 cut(s)	266, 957, 1130
BstAPI	GCANNNNNTGC	2 cut(s)	148, 662
BstC8I	GCNNGC	2 cut(s)	204, 562
BstDEI	CTNAG	4 cut(s)	318, 402, 432, 1064
BstDSI	CCRYGG	1 cut(s)	1129
BstF5I	GGATG	3 cut(s)	637, 874, 1108
BstFNI	CGCG	1 cut(s)	488
BstHHI	GCGC	2 cut(s)	252, 490
BstKTI	GATC	3 cut(s)	343, 628, 1108
BstMAI	GTCTC	4 cut(s)	51, 203, 221, 351
BstMBI	GATC	3 cut(s)	340, 625, 1105
BstMCI	CGRYCG	1 cut(s)	343
BstMWI	GCNNNNNNNGC	6 cut(s)	139, 142, 148, 653, 662, 671
BstNI	CCWGG	2 cut(s)	711, 1116
BstNSI	RCATGY	1 cut(s)	907
BstPAI	GACNNNNGTC	1 cut(s)	215
BstSCI	CCNGG	3 cut(s)	709, 1047, 1114
BstSFI	CTRYAG	1 cut(s)	654
BstSLI	GKGCMC	1 cut(s)	362
BstUI	CGCG	1 cut(s)	488
BstV1I	GCAGC	7 cut(s)	63, 145, 148, 151, 154, 177, 668
BstV2I	GAAGAC	1 cut(s)	879
Bsu15I	ATCGAT	1 cut(s)	30
BsuRI	GGCC	3 cut(s)	191, 598, 947
BsuTUI	ATCGAT	1 cut(s)	30
BtgI	CCRYGG	1 cut(s)	1129
BtsCI	GGATG	3 cut(s)	637, 874, 1108
BtsIMutI	CAGTG	1 cut(s)	1014
Cac8I	GCNNGC	2 cut(s)	204, 562
CciI	TCATGA	1 cut(s)	628
CfoI	GCGC	2 cut(s)	252, 490
Cfr13I	GGNCC	3 cut(s)	175, 190, 217
ClaI	ATCGAT	1 cut(s)	30
CsiI	ACCWGGT	1 cut(s)	1114
Csp6I	GTAC	4 cut(s)	4, 493, 989, 1081
CviAII	CATG	7 cut(s)	61, 179, 410, 629, 735, 904, 1059
CviQI	GTAC	4 cut(s)	4, 493, 989, 1081
DdeI	CTNAG	4 cut(s)	318, 402, 432, 1064
DpnI	GATC	3 cut(s)	342, 627, 1107
DpnII	GATC	3 cut(s)	340, 625, 1105
DrdI	GACNNNNNNGTC	1 cut(s)	881
DseDI	GACNNNNNNGTC	1 cut(s)	881
EaeI	YGGCCR	1 cut(s)	945
Eco130I	CCWWGG	1 cut(s)	689
Eco31I	GGTCTC	1 cut(s)	351
Eco47I	GGWCC	2 cut(s)	175, 217
Eco57I	CTGAAG	1 cut(s)	1038
Eco88I	CYCGRG	1 cut(s)	21
EcoO109I	RGGNCCY	1 cut(s)	190
EcoRII	CCWGG	2 cut(s)	709, 1114
EcoT14I	CCWWGG	1 cut(s)	689
ErhI	CCWWGG	1 cut(s)	689
FaeI	CATG	7 cut(s)	64, 182, 413, 632, 738, 907, 1062
FalI	AAGNNNNNCTT	2 cut(s)	553, 585
FaqI	GGGAC	2 cut(s)	486, 914
FatI	CATG	7 cut(s)	60, 178, 409, 628, 734, 903, 1058
FauI	CCCGC	1 cut(s)	1052
Fnu4HI	GCNGC	8 cut(s)	52, 134, 137, 140, 143, 166, 169, 657
FokI	GGATG	3 cut(s)	624, 881, 1115
Fsp4HI	GCNGC	8 cut(s)	52, 134, 137, 140, 143, 166, 169, 657
FspBI	CTAG	2 cut(s)	588, 774
GlaI	GCGC	2 cut(s)	251, 489
GluI	GCNGC	8 cut(s)	52, 134, 137, 140, 143, 166, 169, 657
HaeIII	GGCC	3 cut(s)	191, 598, 947
HapII	CCGG	1 cut(s)	1048
HhaI	GCGC	2 cut(s)	252, 490
Hin1II	CATG	7 cut(s)	64, 182, 413, 632, 738, 907, 1062
Hin6I	GCGC	2 cut(s)	250, 488
HinP1I	GCGC	2 cut(s)	250, 488
HinfI	GANTC	4 cut(s)	229, 521, 744, 971
HpaII	CCGG	1 cut(s)	1048
HphI	GGTGA	2 cut(s)	104, 776
Hpy166II	GTNNAC	1 cut(s)	360
Hpy188I	TCNGA	6 cut(s)	13, 234, 541, 976, 1041, 1065
Hpy188III	TCNNGA	5 cut(s)	611, 629, 893, 932, 1031
Hpy8I	GTNNAC	1 cut(s)	360
Hpy99I	CGWCG	1 cut(s)	621
HpyAV	CCTTC	5 cut(s)	41, 771, 865, 932, 935
HpyCH4III	ACNGT	3 cut(s)	266, 957, 1130
HpyCH4IV	ACGT	2 cut(s)	619, 850
HpyCH4V	TGCA	7 cut(s)	360, 532, 560, 575, 656, 665, 1121
HpyF10VI	GCNNNNNNNGC	6 cut(s)	139, 142, 148, 653, 662, 671
HpyF3I	CTNAG	4 cut(s)	318, 402, 432, 1064
HpySE526I	ACGT	2 cut(s)	619, 850
Hsp92II	CATG	7 cut(s)	64, 182, 413, 632, 738, 907, 1062
HspAI	GCGC	2 cut(s)	250, 488
Kzo9I	GATC	3 cut(s)	340, 625, 1105
LmnI	GCTCC	1 cut(s)	304
Lsp1109I	GCAGC	7 cut(s)	63, 145, 148, 151, 154, 177, 668
LweI	GCATC	4 cut(s)	138, 547, 652, 793
MabI	ACCWGGT	1 cut(s)	1114
MaeI	CTAG	2 cut(s)	588, 774
MaeII	ACGT	2 cut(s)	619, 850
MaeIII	GTNAC	2 cut(s)	667, 754
MalI	GATC	3 cut(s)	342, 627, 1107
MboI	GATC	3 cut(s)	340, 625, 1105
MboII	GAAGA	6 cut(s)	208, 566, 884, 1015, 1031, 1100
MhlI	GDGCHC	1 cut(s)	362
MlsI	TGGCCA	1 cut(s)	947
MluCI	AATT	4 cut(s)	533, 694, 819, 916
MluNI	TGGCCA	1 cut(s)	947
MlyI	GAGTC	3 cut(s)	223, 753, 980
MmeI	TCCRAC	1 cut(s)	843
Mox20I	TGGCCA	1 cut(s)	947
MroXI	GAANNNNTTC	2 cut(s)	335, 1007
MscI	TGGCCA	1 cut(s)	947
MseI	TTAA	5 cut(s)	186, 273, 384, 810, 822
MslI	CAYNNNNRTG	1 cut(s)	933
Msp20I	TGGCCA	1 cut(s)	947
MspA1I	CMGCKG	2 cut(s)	168, 659
MspI	CCGG	1 cut(s)	1048
MspR9I	CCNGG	3 cut(s)	711, 1049, 1116
MvaI	CCWGG	2 cut(s)	711, 1116
MvnI	CGCG	1 cut(s)	488
MwoI	GCNNNNNNNGC	6 cut(s)	139, 142, 148, 653, 662, 671
NciI	CCSGG	1 cut(s)	1049
NdeII	GATC	3 cut(s)	340, 625, 1105
NlaIII	CATG	7 cut(s)	64, 182, 413, 632, 738, 907, 1062
NlaIV	GGNNCC	2 cut(s)	192, 218
NmeAIII	GCCGAG	2 cut(s)	80, 232
NmuCI	GTSAC	1 cut(s)	754
NspI	RCATGY	1 cut(s)	907
PaeR7I	CTCGAG	1 cut(s)	21
PagI	TCATGA	1 cut(s)	628
PdmI	GAANNNNTTC	2 cut(s)	335, 1007
PfeI	GAWTC	1 cut(s)	521
PkrI	GCNGC	8 cut(s)	53, 135, 138, 141, 144, 167, 170, 658
Ple19I	CGATCG	1 cut(s)	343
PleI	GAGTC	3 cut(s)	223, 752, 979
PpsI	GAGTC	3 cut(s)	223, 752, 979
PshAI	GACNNNNGTC	1 cut(s)	215
Psp6I	CCWGG	2 cut(s)	709, 1114
PspGI	CCWGG	2 cut(s)	709, 1114
PspN4I	GGNNCC	2 cut(s)	192, 218
PspPI	GGNCC	3 cut(s)	175, 190, 217
PspXI	VCTCGAGB	1 cut(s)	21
PsrI	GAACNNNNNNTAC	2 cut(s)	476, 508
PstI	CTGCAG	1 cut(s)	658
PvuI	CGATCG	1 cut(s)	343
PvuII	CAGCTG	1 cut(s)	659
RsaI	GTAC	4 cut(s)	5, 494, 990, 1082
RsaNI	GTAC	4 cut(s)	4, 493, 989, 1081
RseI	CAYNNNNRTG	1 cut(s)	933
SaqAI	TTAA	5 cut(s)	186, 273, 384, 810, 822
SatI	GCNGC	8 cut(s)	52, 134, 137, 140, 143, 166, 169, 657
Sau3AI	GATC	3 cut(s)	340, 625, 1105
Sau96I	GGNCC	3 cut(s)	175, 190, 217
SchI	GAGTC	3 cut(s)	223, 753, 980
ScrFI	CCNGG	3 cut(s)	711, 1049, 1116
SduI	GDGCHC	1 cut(s)	362
SexAI	ACCWGGT	1 cut(s)	1114
SfaNI	GCATC	4 cut(s)	138, 547, 652, 793
SfcI	CTRYAG	1 cut(s)	654
Sfr274I	CTCGAG	1 cut(s)	21
SinI	GGWCC	2 cut(s)	175, 217
SlaI	CTCGAG	1 cut(s)	21
SmiMI	CAYNNNNRTG	1 cut(s)	933
SmlI	CTYRAG	1 cut(s)	21
SmoI	CTYRAG	1 cut(s)	21
Sse9I	AATT	4 cut(s)	533, 694, 819, 916
SsiI	CCGC	3 cut(s)	168, 886, 1045
SspI	AATATT	1 cut(s)	1090
SspMI	CTAG	2 cut(s)	588, 774
StyD4I	CCNGG	3 cut(s)	709, 1047, 1114
StyI	CCWWGG	1 cut(s)	689
TaaI	ACNGT	3 cut(s)	266, 957, 1130
TaiI	ACGT	2 cut(s)	622, 853
TaqI	TCGA	4 cut(s)	22, 30, 339, 1111
TaqII	GACCGA	1 cut(s)	333
TasI	AATT	4 cut(s)	533, 694, 819, 916
TatI	WGTACW	3 cut(s)	3, 492, 988
TauI	GCSGC	1 cut(s)	171
TfiI	GAWTC	1 cut(s)	521
Tru1I	TTAA	5 cut(s)	186, 273, 384, 810, 822
Tru9I	TTAA	5 cut(s)	186, 273, 384, 810, 822
TscAI	CASTG	1 cut(s)	1021
TseFI	GTSAC	1 cut(s)	754
TseI	GCWGC	7 cut(s)	51, 133, 136, 139, 142, 165, 656
Tsp45I	GTSAC	1 cut(s)	754
TspDTI	ATGAA	4 cut(s)	195, 885, 917, 951
TspRI	CASTG	1 cut(s)	1021
VneI	GTGCAC	1 cut(s)	358
VpaK11BI	GGWCC	2 cut(s)	175, 217
XceI	RCATGY	1 cut(s)	907
XcmI	CCANNNNNNNNNTGG	1 cut(s)	693
XhoI	CTCGAG	1 cut(s)	21
XmnI	GAANNNNTTC	2 cut(s)	335, 1007
XspI	CTAG	2 cut(s)	588, 774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.