Rorug04G0251400
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0013235
Physical Location & Seq
Forward (+)
42446855 .. 42447708
854 bp
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UTR
Exon/CDS
Intron
Rorug04G0251400.1

Sequence Viewer

Length: 309 bp
ATGGAGGCGGTGACAAAGATGGTTTCCGAGAGACCGGTGGTGATCTTCAGCAAGAGCTCATGCTGCATGTCCCACTCAATCAAGACCTTGCTTTGCGATTTTGGGGTCAACCCGGCAGTGCATGAGCTTGATGAGATGCAAAGAGGGAGAGAGTTAGAGCAAGCTCTTTTAAGGCTCGGATGCAACCCATCTGTGCCAGCTGTGTTCATTGGTGGCGAATTTATTGGTGGAGCCAATGAGGTCATGAGTCTTCATCTTAAGCGCTCCTTAATTCCCATGCTTAAGCGCGTGGGCGCATTATGGGTTTGA

Protein Analysis

102

Amino Acids

11.21

Weight (kDa)

7.71

Isoelectric Point (pI)

53.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 13 - 75 1.6e-14 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013235)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13450 AT3G25990
fragaria_vesca FvH4_4g24610 FvH4_4g24610
malus_domestica MD13G1109800.v1.1 MD16G1109700.v1.1
prunus_persica Prupe.1G235200_v2.0.a1
pyrus_communis pycom13g09560
rosa_chinensis RchiOBHm_Chr4g0431621
rosa_laevigata RLG00000006903
rosa_multiflora Rmu_ssc0000487.1_g000003
rosa_roxburghii Rroxscaffold_5G00373080
rosa_rugosa Rorug04G0251400
rosa_samantha Rh4AG308000 Rh4BG315600 Rh4CG331100 Rh4DG310600
rosa_wichuraiana Rw4G026710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 288
AciI CCGC 1 cut(s) 8
AcsI RAATTY 1 cut(s) 218
AcuI CTGAAG 1 cut(s) 31
AfeI AGCGCT 1 cut(s) 263
AflII CTTAAG 2 cut(s) 257, 281
AgeI ACCGGT 1 cut(s) 34
AluBI AGCT 4 cut(s) 57, 127, 164, 200
AluI AGCT 4 cut(s) 57, 127, 164, 200
Alw21I GWGCWC 1 cut(s) 59
Alw26I GTCTC 1 cut(s) 25
Aor51HI AGCGCT 1 cut(s) 263
ApeKI GCWGC 1 cut(s) 63
ApoI RAATTY 1 cut(s) 218
AsiGI ACCGGT 1 cut(s) 34
AspLEI GCGC 3 cut(s) 264, 288, 296
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 2 cut(s) 22, 52
BanII GRGCYC 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 242
Bbv12I GWGCWC 1 cut(s) 59
BbvI GCAGC 1 cut(s) 50
BccI CCATC 2 cut(s) 13, 196
BcnI CCSGG 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 25
BfoI RGCGCY 1 cut(s) 265
BfrI CTTAAG 2 cut(s) 257, 281
BisI GCNGC 1 cut(s) 64
BlsI GCNGC 1 cut(s) 65
Bme1390I CCNGG 1 cut(s) 113
BmiI GGNNCC 1 cut(s) 232
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 2 cut(s) 126, 170
BpiI GAAGAC 1 cut(s) 242
BpuMI CCSGG 1 cut(s) 113
BsaI GGTCTC 1 cut(s) 25
BsaWI WCCGGW 1 cut(s) 34
Bse118I RCCGGY 1 cut(s) 34
BseGI GGATG 1 cut(s) 185
BseXI GCAGC 1 cut(s) 50
Bsh1236I CGCG 1 cut(s) 288
BshTI ACCGGT 1 cut(s) 34
BsiHKAI GWGCWC 1 cut(s) 59
BsiSI CCGG 2 cut(s) 35, 113
BslFI GGGAC 1 cut(s) 55
BsmAI GTCTC 1 cut(s) 25
BsmFI GGGAC 1 cut(s) 55
Bso31I GGTCTC 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 1 cut(s) 42
BspACI CCGC 1 cut(s) 8
BspFNI CGCG 1 cut(s) 288
BspHI TCATGA 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 232
BspTI CTTAAG 2 cut(s) 257, 281
BspTNI GGTCTC 1 cut(s) 25
BsrFI RCCGGY 1 cut(s) 34
BssAI RCCGGY 1 cut(s) 34
BssMI GATC 1 cut(s) 42
BstAFI CTTAAG 2 cut(s) 257, 281
BstC8I GCNNGC 2 cut(s) 162, 198
BstF5I GGATG 1 cut(s) 185
BstFNI CGCG 1 cut(s) 288
BstH2I RGCGCY 1 cut(s) 265
BstHHI GCGC 3 cut(s) 264, 288, 296
BstKTI GATC 1 cut(s) 45
BstMAI GTCTC 1 cut(s) 25
BstMBI GATC 1 cut(s) 42
BstMWI GCNNNNNNNGC 1 cut(s) 63
BstNSI RCATGY 1 cut(s) 70
BstSCI CCNGG 1 cut(s) 111
BstUI CGCG 1 cut(s) 288
BstV1I GCAGC 1 cut(s) 50
BstV2I GAAGAC 1 cut(s) 242
BtsCI GGATG 1 cut(s) 185
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 123
Cac8I GCNNGC 2 cut(s) 162, 198
CciI TCATGA 1 cut(s) 243
CfoI GCGC 3 cut(s) 264, 288, 296
Cfr10I RCCGGY 1 cut(s) 34
CspAI ACCGGT 1 cut(s) 34
CviAII CATG 5 cut(s) 60, 67, 122, 244, 277
CviJI RGCY 6 cut(s) 57, 127, 164, 175, 200, 233
CviKI_1 RGCY 6 cut(s) 57, 127, 164, 175, 200, 233
DpnI GATC 1 cut(s) 44
DpnII GATC 1 cut(s) 42
Ecl136II GAGCTC 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 59
Eco31I GGTCTC 1 cut(s) 25
Eco47III AGCGCT 1 cut(s) 263
Eco53kI GAGCTC 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 31
EcoICRI GAGCTC 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 59
FaeI CATG 5 cut(s) 63, 70, 125, 247, 280
FaiI YATR 6 cut(s) 61, 68, 123, 245, 278, 301
FalI AAGNNNNNCTT 2 cut(s) 251, 283
FaqI GGGAC 1 cut(s) 55
FatI CATG 5 cut(s) 59, 66, 121, 243, 276
Fnu4HI GCNGC 1 cut(s) 64
FokI GGATG 1 cut(s) 192
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 1 cut(s) 64
GlaI GCGC 3 cut(s) 263, 287, 295
GluI GCNGC 1 cut(s) 64
HaeII RGCGCY 1 cut(s) 265
HapII CCGG 2 cut(s) 35, 113
HhaI GCGC 3 cut(s) 264, 288, 296
Hin1II CATG 5 cut(s) 63, 70, 125, 247, 280
Hin6I GCGC 3 cut(s) 262, 286, 294
HinP1I GCGC 3 cut(s) 262, 286, 294
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HinfI GANTC 1 cut(s) 247
HpaII CCGG 2 cut(s) 35, 113
HphI GGTGA 2 cut(s) 22, 52
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 2 cut(s) 28, 179
Hpy188III TCNNGA 2 cut(s) 82, 244
Hpy8I GTNNAC 1 cut(s) 109
HpyCH4V TGCA 4 cut(s) 66, 121, 139, 183
HpyF10VI GCNNNNNNNGC 1 cut(s) 63
Hsp92II CATG 5 cut(s) 63, 70, 125, 247, 280
HspAI GCGC 3 cut(s) 262, 286, 294
Kzo9I GATC 1 cut(s) 42
LmnI GCTCC 2 cut(s) 230, 269
LpnPI CCDG 3 cut(s) 48, 126, 210
Lsp1109I GCAGC 1 cut(s) 50
LweI GCATC 2 cut(s) 126, 170
MaeIII GTNAC 1 cut(s) 10
MalI GATC 1 cut(s) 44
MboI GATC 1 cut(s) 42
MboII GAAGA 2 cut(s) 37, 242
MhlI GDGCHC 1 cut(s) 59
MluCI AATT 2 cut(s) 218, 270
MlyI GAGTC 1 cut(s) 256
MnlI CCTC 2 cut(s) 137, 232
MseI TTAA 4 cut(s) 170, 258, 269, 282
MspA1I CMGCKG 1 cut(s) 200
MspCI CTTAAG 2 cut(s) 257, 281
MspI CCGG 2 cut(s) 35, 113
MspR9I CCNGG 1 cut(s) 113
MvnI CGCG 1 cut(s) 288
MwoI GCNNNNNNNGC 1 cut(s) 63
NciI CCSGG 1 cut(s) 113
NdeII GATC 1 cut(s) 42
NlaIII CATG 5 cut(s) 63, 70, 125, 247, 280
NlaIV GGNNCC 1 cut(s) 232
NmuCI GTSAC 1 cut(s) 10
NspI RCATGY 1 cut(s) 70
PagI TCATGA 1 cut(s) 243
PinAI ACCGGT 1 cut(s) 34
PkrI GCNGC 1 cut(s) 65
PleI GAGTC 1 cut(s) 255
PpsI GAGTC 1 cut(s) 255
Psp124BI GAGCTC 1 cut(s) 59
PspN4I GGNNCC 1 cut(s) 232
PvuII CAGCTG 1 cut(s) 200
SacI GAGCTC 1 cut(s) 59
SaqAI TTAA 4 cut(s) 170, 258, 269, 282
SatI GCNGC 1 cut(s) 64
Sau3AI GATC 1 cut(s) 42
SchI GAGTC 1 cut(s) 256
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 1 cut(s) 59
SetI ASST 6 cut(s) 59, 89, 129, 166, 202, 243
SfaNI GCATC 2 cut(s) 126, 170
SmlI CTYRAG 2 cut(s) 257, 281
SmoI CTYRAG 2 cut(s) 257, 281
Sse9I AATT 2 cut(s) 218, 270
SsiI CCGC 1 cut(s) 8
SstI GAGCTC 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 111
TasI AATT 2 cut(s) 218, 270
Tru1I TTAA 4 cut(s) 170, 258, 269, 282
Tru9I TTAA 4 cut(s) 170, 258, 269, 282
TscAI CASTG 1 cut(s) 123
TseFI GTSAC 1 cut(s) 10
TseI GCWGC 1 cut(s) 63
Tsp45I GTSAC 1 cut(s) 10
TspDTI ATGAA 2 cut(s) 196, 242
TspRI CASTG 1 cut(s) 123
Vha464I CTTAAG 2 cut(s) 257, 281
XapI RAATTY 1 cut(s) 218
XceI RCATGY 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.