Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013235

Physical Location & Seq

Genomic Coordinates Forward (+)

55829888 .. 55833493

Gene Structure 3606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40026

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGTATTTGTCCGAAAAGCCTCAGCCGGTTGATTTTCACAAAGGGGACGAAGGCGGCGGCGAGGACATGATGATTGAGGTGGTTCCGAATGAGGATGTTTCCCAAACCCATCACCGGAATCATCATCAGCAGCAGCAGCAGCATCACCAATTGCTGCTATTGGGGGACAGCAGCGGCAGTGGGGAGGACCACGAAGCTAAGCCCCAGAAAAAGAGAGCCGAAACTTGGGTGCAGGATGAGACTCGGAGTTTGATAGCCCTGCGCCGAGAAATGGACAGCATGTTCAACACTTCCAAGTCCAACAAGCACTTGTGGGAGCAGATTTCGGCGAAAATGAGGGAGAAAGGGTTCGACCGCAATCCCAATATGTGCACTGACAAGTGGAGGAACTTGCTTAAGGAGTTCAAGAAGGCCAAGCATAATCATGACCGGGGCAGTGGCTCCGCTAAGATGTCATATTATAAAGAGATTGAGGAGATTTTGAAACAAAGAAACAAGAATGGTCAGTACAAATCCCCTACTCCGCCCAAGGTTGATTCTTTTATGCACTTCTCAGATAAAGGGATAGAAGATACAAACATTTCCTTTGCACATGTGGAAGCTAATGGCAGGCCAACACTCAATCTCGAGACAGGTTTGGACCATGATGGTCATCCTCTTGCCATTACTGCTGCTGATGCAGTTGCAGCAAATGGAGTTGCACCTTGGAATTGGAGAGAGACCCCTGAAAATGGTGGGGAGAATCAATCATATGGCGGGAGAGTCATAGTAGTAACCTGGGGTGATTATACTCGGAGGATTGGAATTGATGGCTCGGCAGATGCCATTAAGGAGGCCATCAAGTCTGCTTTTAGGTTGAGAACAAAACGCGCCTTCTGGTTGGAGGATGAAGATCAAATTGTCCGAAGTCTTGACAGGGACATGCCTCTGGGAAATTACACCCTTCATCTTGACGAAGGGTTGGCTGTAAAAGTGTGCCTGTATGATGAGCCAGAAAACATACCCGTACATACAGAGGAGAAGATTTTTTACACCGAAGATGATTATCATGAATTCCTAACCCGCCGTGGGTGGACATGTTTGCGGGAATTTGATGGGTACAGAAATATCGAAAATATGGATGATCTTCGACCTGGTGCGATATATCGTGGTGTGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

386

Amino Acids

44.39

Weight (kDa)

5.78

Isoelectric Point (pI)

52.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	75 - 160	6.6e-22	Myb/SANT-like DNA-binding domain
Ubiquitin_GT-1	PF26214	254 - 314	9.4e-09	GT-1-like, ubiquitin-like domain
Ubiquitin_GT-1	PF26214	319 - 384	8.5e-34	GT-1-like, ubiquitin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13450 AT3G25990
fragaria_vesca	FvH4_4g24610 FvH4_4g24610
malus_domestica	MD13G1109800.v1.1 MD16G1109700.v1.1
prunus_persica	Prupe.1G235200_v2.0.a1
pyrus_communis	pycom13g09560
rosa_chinensis	RchiOBHm_Chr4g0431621
rosa_laevigata	RLG00000006903
rosa_multiflora	Rmu_ssc0000487.1_g000003
rosa_roxburghii	Rroxscaffold_5G00373080
rosa_rugosa	Rorug04G0251400
rosa_samantha	Rh4AG308000 Rh4BG315600 Rh4CG331100 Rh4DG310600
rosa_wichuraiana	Rw4G026710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	462
AccII	CGCG	1 cut(s)	870
AciI	CCGC	9 cut(s)	54, 57, 174, 355, 444, 524, 756, 1063, 1084
AcsI	RAATTY	2 cut(s)	1052, 1088
AfaI	GTAC	3 cut(s)	509, 1008, 1100
AfiI	CCNNNNNNNGG	5 cut(s)	114, 225, 271, 731, 1068
AflII	CTTAAG	1 cut(s)	395
AflIII	ACRYGT	2 cut(s)	592, 1076
AgsI	TTSAA	3 cut(s)	286, 406, 484
AjnI	CCWGG	2 cut(s)	776, 1132
AloI	GAACNNNNNNTCC	4 cut(s)	266, 298, 332, 364
AluBI	AGCT	2 cut(s)	197, 602
AluI	AGCT	2 cut(s)	197, 602
Alw21I	GWGCWC	1 cut(s)	374
Alw26I	GTCTC	3 cut(s)	233, 623, 713
Alw44I	GTGCAC	1 cut(s)	370
Ama87I	CYCGRG	1 cut(s)	626
AoxI	GGCC	3 cut(s)	411, 611, 834
ApaLI	GTGCAC	1 cut(s)	370
ApeKI	GCWGC	8 cut(s)	130, 133, 136, 139, 154, 171, 671, 686
ApoI	RAATTY	2 cut(s)	1052, 1088
ArsI	GACNNNNNNTTYG	2 cut(s)	232, 264
Asp700I	GAANNNNTTC	1 cut(s)	347
AspLEI	GCGC	2 cut(s)	264, 872
AspS9I	GGNCC	2 cut(s)	187, 640
AsuC2I	CCSGG	1 cut(s)	431
AsuHPI	GGTGA	3 cut(s)	104, 137, 794
AvaI	CYCGRG	1 cut(s)	626
AvaII	GGWCC	2 cut(s)	187, 640
BaeGI	GKGCMC	1 cut(s)	374
BarI	GAAGNNNNNNTAC	2 cut(s)	1013, 1045
Bbv12I	GWGCWC	1 cut(s)	374
BbvCI	CCTCAGC	1 cut(s)	21
BbvI	GCAGC	8 cut(s)	141, 142, 145, 148, 151, 183, 658, 698
BccI	CCATC	5 cut(s)	117, 641, 803, 845, 1088
BceAI	ACGGC	1 cut(s)	1050
BciT130I	CCWGG	2 cut(s)	778, 1134
BcnI	CCSGG	1 cut(s)	431
BcoDI	GTCTC	3 cut(s)	233, 623, 713
BfrI	CTTAAG	1 cut(s)	395
BlpI	GCTNAGC	1 cut(s)	198
Bme1390I	CCNGG	3 cut(s)	431, 778, 1134
Bme18I	GGWCC	2 cut(s)	187, 640
BmeT110I	CYCGRG	1 cut(s)	626
BmgT120I	GGNCC	2 cut(s)	187, 640
BmiI	GGNNCC	2 cut(s)	84, 442
BmrFI	CCNGG	3 cut(s)	431, 778, 1134
BmsI	GCATC	3 cut(s)	151, 667, 811
Bpu10I	CCTNAGC	1 cut(s)	21
Bpu1102I	GCTNAGC	1 cut(s)	198
BpuMI	CCSGG	1 cut(s)	431
BsaBI	GATNNNNATC	3 cut(s)	651, 891, 1044
BsaI	GGTCTC	1 cut(s)	713
BsaJI	CCNNGG	5 cut(s)	430, 528, 704, 777, 1066
BsaWI	WCCGGW	1 cut(s)	114
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bsc4I	CCNNNNNNNGG	5 cut(s)	114, 225, 271, 731, 1068
Bse118I	RCCGGY	1 cut(s)	25
Bse8I	GATNNNNATC	3 cut(s)	651, 891, 1044
BseBI	CCWGG	2 cut(s)	778, 1134
BseDI	CCNNGG	5 cut(s)	430, 528, 704, 777, 1066
BseGI	GGATG	5 cut(s)	100, 241, 652, 892, 1126
BseJI	GATNNNNATC	3 cut(s)	651, 891, 1044
BseLI	CCNNNNNNNGG	5 cut(s)	114, 225, 271, 731, 1068
BseMII	CTCAG	2 cut(s)	35, 567
BseRI	GAGGAG	2 cut(s)	488, 1031
BseSI	GKGCMC	1 cut(s)	374
BseXI	GCAGC	8 cut(s)	141, 142, 145, 148, 151, 183, 658, 698
BsgI	GTGCAG	1 cut(s)	251
Bsh1236I	CGCG	1 cut(s)	870
Bsh1285I	CGRYCG	1 cut(s)	355
BshFI	GGCC	3 cut(s)	413, 613, 836
BsiEI	CGRYCG	1 cut(s)	355
BsiHKAI	GWGCWC	1 cut(s)	374
BsiHKCI	CYCGRG	1 cut(s)	626
BsiSI	CCGG	3 cut(s)	26, 115, 430
BslFI	GGGAC	3 cut(s)	59, 179, 932
BslI	CCNNNNNNNGG	5 cut(s)	114, 225, 271, 731, 1068
BsmAI	GTCTC	3 cut(s)	233, 623, 713
BsmFI	GGGAC	3 cut(s)	59, 179, 932
BsnI	GGCC	3 cut(s)	413, 613, 836
Bso31I	GGTCTC	1 cut(s)	713
BsoBI	CYCGRG	1 cut(s)	626
Bsp1286I	GDGCHC	1 cut(s)	374
Bsp143I	GATC	2 cut(s)	892, 1123
Bsp1720I	GCTNAGC	1 cut(s)	198
BspACI	CCGC	9 cut(s)	54, 57, 174, 355, 444, 524, 756, 1063, 1084
BspANI	GGCC	3 cut(s)	413, 613, 836
BspCNI	CTCAG	2 cut(s)	34, 566
BspFNI	CGCG	1 cut(s)	870
BspHI	TCATGA	2 cut(s)	424, 1048
BspLI	GGNNCC	2 cut(s)	84, 442
BspTI	CTTAAG	1 cut(s)	395
BspTNI	GGTCTC	1 cut(s)	713
BsrFI	RCCGGY	1 cut(s)	25
BssAI	RCCGGY	1 cut(s)	25
BssECI	CCNNGG	5 cut(s)	430, 528, 704, 777, 1066
BssMI	GATC	2 cut(s)	892, 1123
BssT1I	CCWWGG	2 cut(s)	528, 704
Bst2UI	CCWGG	2 cut(s)	778, 1134
BstAFI	CTTAAG	1 cut(s)	395
BstC8I	GCNNGC	1 cut(s)	611
BstDEI	CTNAG	4 cut(s)	21, 198, 447, 553
BstDSI	CCRYGG	1 cut(s)	1066
BstF5I	GGATG	5 cut(s)	100, 241, 652, 892, 1126
BstFNI	CGCG	1 cut(s)	870
BstHHI	GCGC	2 cut(s)	264, 872
BstKTI	GATC	2 cut(s)	895, 1126
BstMAI	GTCTC	3 cut(s)	233, 623, 713
BstMBI	GATC	2 cut(s)	892, 1123
BstMCI	CGRYCG	1 cut(s)	355
BstMWI	GCNNNNNNNGC	5 cut(s)	136, 139, 668, 677, 686
BstNI	CCWGG	2 cut(s)	778, 1134
BstNSI	RCATGY	4 cut(s)	283, 596, 925, 1080
BstSCI	CCNGG	3 cut(s)	429, 776, 1132
BstSLI	GKGCMC	1 cut(s)	374
BstUI	CGCG	1 cut(s)	870
BstV1I	GCAGC	8 cut(s)	141, 142, 145, 148, 151, 183, 658, 698
BsuRI	GGCC	3 cut(s)	413, 613, 836
BtgI	CCRYGG	1 cut(s)	1066
BtsCI	GGATG	5 cut(s)	100, 241, 652, 892, 1126
BtsI	GCAGTG	2 cut(s)	184, 442
BtsIMutI	CAGTG	3 cut(s)	184, 372, 442
Cac8I	GCNNGC	1 cut(s)	611
CciI	TCATGA	2 cut(s)	424, 1048
CfoI	GCGC	2 cut(s)	264, 872
Cfr10I	RCCGGY	1 cut(s)	25
Cfr13I	GGNCC	2 cut(s)	187, 640
CsiI	ACCWGGT	1 cut(s)	1132
Csp6I	GTAC	3 cut(s)	508, 1007, 1099
CviAII	CATG	8 cut(s)	67, 280, 425, 593, 644, 922, 1049, 1077
CviQI	GTAC	3 cut(s)	508, 1007, 1099
DdeI	CTNAG	4 cut(s)	21, 198, 447, 553
DpnI	GATC	2 cut(s)	894, 1125
DpnII	GATC	2 cut(s)	892, 1123
EciI	GGCGGA	1 cut(s)	513
Eco130I	CCWWGG	2 cut(s)	528, 704
Eco31I	GGTCTC	1 cut(s)	713
Eco47I	GGWCC	2 cut(s)	187, 640
Eco88I	CYCGRG	1 cut(s)	626
EcoRI	GAATTC	1 cut(s)	1052
EcoRII	CCWGG	2 cut(s)	776, 1132
EcoT14I	CCWWGG	2 cut(s)	528, 704
ErhI	CCWWGG	2 cut(s)	528, 704
FaeI	CATG	8 cut(s)	70, 283, 428, 596, 647, 925, 1052, 1080
FaqI	GGGAC	3 cut(s)	59, 179, 932
FatI	CATG	8 cut(s)	66, 279, 424, 592, 643, 921, 1048, 1076
FauI	CCCGC	3 cut(s)	749, 1070, 1077
FauNDI	CATATG	1 cut(s)	751
FokI	GGATG	5 cut(s)	107, 248, 639, 899, 1133
GlaI	GCGC	2 cut(s)	263, 871
HaeIII	GGCC	3 cut(s)	413, 613, 836
HapII	CCGG	3 cut(s)	26, 115, 430
HhaI	GCGC	2 cut(s)	264, 872
Hin1II	CATG	8 cut(s)	70, 283, 428, 596, 647, 925, 1052, 1080
Hin6I	GCGC	2 cut(s)	262, 870
HinP1I	GCGC	2 cut(s)	262, 870
HinfI	GANTC	5 cut(s)	118, 241, 536, 742, 762
HpaII	CCGG	3 cut(s)	26, 115, 430
HphI	GGTGA	3 cut(s)	104, 137, 794
Hpy166II	GTNNAC	2 cut(s)	372, 1074
Hpy188I	TCNGA	6 cut(s)	13, 87, 246, 556, 795, 905
Hpy188III	TCNNGA	7 cut(s)	406, 425, 626, 628, 911, 950, 1049
Hpy8I	GTNNAC	2 cut(s)	372, 1074
HpyAV	CCTTC	5 cut(s)	44, 403, 883, 950, 953
HpyCH4V	TGCA	7 cut(s)	232, 372, 547, 590, 680, 686, 701
HpyF10VI	GCNNNNNNNGC	5 cut(s)	136, 139, 668, 677, 686
HpyF3I	CTNAG	4 cut(s)	21, 198, 447, 553
Hsp92II	CATG	8 cut(s)	70, 283, 428, 596, 647, 925, 1052, 1080
HspAI	GCGC	2 cut(s)	262, 870
Kzo9I	GATC	2 cut(s)	892, 1123
LmnI	GCTCC	2 cut(s)	316, 446
Lsp1109I	GCAGC	8 cut(s)	141, 142, 145, 148, 151, 183, 658, 698
LweI	GCATC	3 cut(s)	151, 667, 811
MabI	ACCWGGT	1 cut(s)	1132
MaeIII	GTNAC	1 cut(s)	772
MalI	GATC	2 cut(s)	894, 1125
MboI	GATC	2 cut(s)	892, 1123
MboII	GAAGA	5 cut(s)	581, 902, 1033, 1049, 1118
MfeI	CAATTG	1 cut(s)	149
MhlI	GDGCHC	1 cut(s)	374
MluCI	AATT	7 cut(s)	149, 709, 804, 897, 934, 1052, 1088
MlyI	GAGTC	2 cut(s)	235, 771
MmeI	TCCRAC	2 cut(s)	324, 861
MroXI	GAANNNNTTC	1 cut(s)	347
MseI	TTAA	2 cut(s)	396, 828
MslI	CAYNNNNRTG	1 cut(s)	423
MspA1I	CMGCKG	1 cut(s)	174
MspCI	CTTAAG	1 cut(s)	395
MspI	CCGG	3 cut(s)	26, 115, 430
MspR9I	CCNGG	3 cut(s)	431, 778, 1134
MunI	CAATTG	1 cut(s)	149
MvaI	CCWGG	2 cut(s)	778, 1134
MvnI	CGCG	1 cut(s)	870
MwoI	GCNNNNNNNGC	5 cut(s)	136, 139, 668, 677, 686
NciI	CCSGG	1 cut(s)	431
NdeI	CATATG	1 cut(s)	751
NdeII	GATC	2 cut(s)	892, 1123
NlaIII	CATG	8 cut(s)	70, 283, 428, 596, 647, 925, 1052, 1080
NlaIV	GGNNCC	2 cut(s)	84, 442
NmeAIII	GCCGAG	2 cut(s)	290, 794
NspI	RCATGY	4 cut(s)	283, 596, 925, 1080
PaeR7I	CTCGAG	1 cut(s)	626
PagI	TCATGA	2 cut(s)	424, 1048
PciI	ACATGT	2 cut(s)	592, 1076
PdmI	GAANNNNTTC	1 cut(s)	347
PfeI	GAWTC	3 cut(s)	118, 536, 742
PleI	GAGTC	2 cut(s)	235, 770
PpsI	GAGTC	2 cut(s)	235, 770
PscI	ACATGT	2 cut(s)	592, 1076
PsiI	TTATAA	1 cut(s)	462
Psp6I	CCWGG	2 cut(s)	776, 1132
PspGI	CCWGG	2 cut(s)	776, 1132
PspN4I	GGNNCC	2 cut(s)	84, 442
PspPI	GGNCC	2 cut(s)	187, 640
RsaI	GTAC	3 cut(s)	509, 1008, 1100
RsaNI	GTAC	3 cut(s)	508, 1007, 1099
RseI	CAYNNNNRTG	1 cut(s)	423
SaqAI	TTAA	2 cut(s)	396, 828
Sau3AI	GATC	2 cut(s)	892, 1123
Sau96I	GGNCC	2 cut(s)	187, 640
SchI	GAGTC	2 cut(s)	235, 771
ScrFI	CCNGG	3 cut(s)	431, 778, 1134
SduI	GDGCHC	1 cut(s)	374
SetI	ASST	9 cut(s)	81, 199, 534, 604, 637, 706, 779, 857, 1135
SexAI	ACCWGGT	1 cut(s)	1132
SfaNI	GCATC	3 cut(s)	151, 667, 811
Sfr274I	CTCGAG	1 cut(s)	626
SinI	GGWCC	2 cut(s)	187, 640
SlaI	CTCGAG	1 cut(s)	626
SmiMI	CAYNNNNRTG	1 cut(s)	423
SmlI	CTYRAG	2 cut(s)	395, 626
SmoI	CTYRAG	2 cut(s)	395, 626
Sse9I	AATT	7 cut(s)	149, 709, 804, 897, 934, 1052, 1088
SsiI	CCGC	9 cut(s)	54, 57, 174, 355, 444, 524, 756, 1063, 1084
StyD4I	CCNGG	3 cut(s)	429, 776, 1132
StyI	CCWWGG	2 cut(s)	528, 704
TaqI	TCGA	4 cut(s)	351, 627, 1110, 1129
TasI	AATT	7 cut(s)	149, 709, 804, 897, 934, 1052, 1088
TatI	WGTACW	1 cut(s)	507
TauI	GCSGC	3 cut(s)	57, 60, 177
TfiI	GAWTC	3 cut(s)	118, 536, 742
Tru1I	TTAA	2 cut(s)	396, 828
Tru9I	TTAA	2 cut(s)	396, 828
TscAI	CASTG	3 cut(s)	184, 379, 442
TseI	GCWGC	8 cut(s)	130, 133, 136, 139, 154, 171, 671, 686
TspDTI	ATGAA	3 cut(s)	903, 935, 1065
TspRI	CASTG	3 cut(s)	184, 379, 442
Vha464I	CTTAAG	1 cut(s)	395
VneI	GTGCAC	1 cut(s)	370
VpaK11BI	GGWCC	2 cut(s)	187, 640
XapI	RAATTY	2 cut(s)	1052, 1088
XceI	RCATGY	4 cut(s)	283, 596, 925, 1080
XhoI	CTCGAG	1 cut(s)	626
XmnI	GAANNNNTTC	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.