Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0013235

Physical Location & Seq

Genomic Coordinates Forward (+)

61961062 .. 61966952

Gene Structure 5891 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG308000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGTATTTGTCCGAAAAGCCTCATCCGGTTGATTTTCACAAAGGGGACGAAGGCGGCGAGGACATGATGATTGAGGTGGTTCCGAATGAGGATGTTTCCCAAACCCATCACCGGAATCATCAGCAGCAGCATCACCAATTGCTGCTATTGGGGGACAGTAGCGGCAGTGGGGAGGACCACGAAGCTAAGCCCCAGAAAAAGAGAGCCGAAACTTGGGTGCAGGATGAGACTCGGAGTTTGATAGCTCTGCGCCGAGAAATGGACAGCATGTTCAACACTTCCAAGTCTAACAAGCACTTGTGGGAGCAGATTTCGGCGAAAATGAGGGAGAAAGGGTTCGACCGCAATCCCAATATGTGCACTGACAAGTGGAGGAACTTGCTTAAGGAGTTCAAGAAGGCTAAGCATAATCATGACAGGGGGAGTGGCTCGGCTAAGATGTCATATTATAAAGAGATTGAGGAGATTTTGAAAGAAAGAAACAAGAATGGTCAGTACAAAAGCCCTACTCCGCCCAAGGTTGATTCTTTTATGCAGTTCTCAGATAAAGGGATGGAAGATACAAACATTTCCTTTGCACATGTGGAAGCTAATGGCAGGCCAACACTCAATCTCGAGACAGGTTTGGACCATGATGGTCATCCTCTTGCCATTACTGCTGCTGATGCAGTTGCAGCAAATGGAGTTGCACCTTGGAATTGGAGAGAGACCCCTGAAAATGGTGGTGAGAATCAATCATATGGCGGGAGAGTCATAGTAGTAACCTGGGGTGATTATACTCGGAGGATTGGAATTGATGGCTCGGCAGATGCCATTAAGGAGGCCATCAAGTCTGCTTTTAGGTTGAGAACAAAACGCGCCTTCTGGTTGGAGGATGAAGACCAAATTGTCCGAAGTCTTGACAGGGACATGCCTCTGGGAAATTACACCCTTCATCTTGACGAAGGTATAGGTTTTGTATTGACCATAAGTGTTGATACTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

328

Amino Acids

37.31

Weight (kDa)

5.93

Isoelectric Point (pI)

39.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	71 - 156	4.9e-22	Myb/SANT-like DNA-binding domain
Ubiquitin_GT-1	PF26214	250 - 310	7.3e-09	GT-1-like, ubiquitin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13450 AT3G25990
fragaria_vesca	FvH4_4g24610 FvH4_4g24610
malus_domestica	MD13G1109800.v1.1 MD16G1109700.v1.1
prunus_persica	Prupe.1G235200_v2.0.a1
pyrus_communis	pycom13g09560
rosa_chinensis	RchiOBHm_Chr4g0431621
rosa_laevigata	RLG00000006903
rosa_multiflora	Rmu_ssc0000487.1_g000003
rosa_roxburghii	Rroxscaffold_5G00373080
rosa_rugosa	Rorug04G0251400
rosa_samantha	Rh4AG308000 Rh4BG315600 Rh4CG331100 Rh4DG310600
rosa_wichuraiana	Rw4G026710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	450
AasI	GACNNNNNNGTC	1 cut(s)	887
AccII	CGCG	1 cut(s)	858
AciI	CCGC	5 cut(s)	54, 162, 343, 512, 744
AfaI	GTAC	1 cut(s)	497
AfiI	CCNNNNNNNGG	4 cut(s)	111, 213, 259, 719
AflII	CTTAAG	1 cut(s)	383
AflIII	ACRYGT	1 cut(s)	580
AgsI	TTSAA	3 cut(s)	274, 394, 472
AjnI	CCWGG	1 cut(s)	764
AloI	GAACNNNNNNTCC	4 cut(s)	254, 286, 320, 352
AluBI	AGCT	3 cut(s)	185, 245, 590
AluI	AGCT	3 cut(s)	185, 245, 590
Alw21I	GWGCWC	1 cut(s)	362
Alw26I	GTCTC	3 cut(s)	221, 611, 701
Alw44I	GTGCAC	1 cut(s)	358
Ama87I	CYCGRG	1 cut(s)	614
AoxI	GGCC	2 cut(s)	599, 822
ApaLI	GTGCAC	1 cut(s)	358
ApeKI	GCWGC	5 cut(s)	124, 127, 142, 659, 674
ArsI	GACNNNNNNTTYG	2 cut(s)	220, 252
Asp700I	GAANNNNTTC	1 cut(s)	335
AspLEI	GCGC	2 cut(s)	252, 860
AspS9I	GGNCC	2 cut(s)	175, 628
AsuHPI	GGTGA	4 cut(s)	101, 125, 737, 782
AvaI	CYCGRG	1 cut(s)	614
AvaII	GGWCC	2 cut(s)	175, 628
BaeGI	GKGCMC	1 cut(s)	362
BbsI	GAAGAC	1 cut(s)	885
Bbv12I	GWGCWC	1 cut(s)	362
BbvI	GCAGC	5 cut(s)	129, 136, 139, 646, 686
BccI	CCATC	5 cut(s)	114, 547, 629, 791, 833
BciT130I	CCWGG	1 cut(s)	766
BcoDI	GTCTC	3 cut(s)	221, 611, 701
BfrI	CTTAAG	1 cut(s)	383
BisI	GCNGC	7 cut(s)	55, 125, 128, 143, 163, 660, 675
BlpI	GCTNAGC	2 cut(s)	186, 402
BlsI	GCNGC	7 cut(s)	56, 126, 129, 144, 164, 661, 676
Bme1390I	CCNGG	1 cut(s)	766
Bme18I	GGWCC	2 cut(s)	175, 628
BmeT110I	CYCGRG	1 cut(s)	614
BmgT120I	GGNCC	2 cut(s)	175, 628
BmiI	GGNNCC	1 cut(s)	81
BmrFI	CCNGG	1 cut(s)	766
BmsI	GCATC	3 cut(s)	139, 655, 799
BpiI	GAAGAC	1 cut(s)	885
Bpu1102I	GCTNAGC	2 cut(s)	186, 402
BsaBI	GATNNNNATC	1 cut(s)	639
BsaI	GGTCTC	1 cut(s)	701
BsaJI	CCNNGG	3 cut(s)	516, 692, 765
BsaWI	WCCGGW	2 cut(s)	25, 111
BsaXI	ACNNNNNCTCC	2 cut(s)	320, 350
Bsc4I	CCNNNNNNNGG	4 cut(s)	111, 213, 259, 719
Bse8I	GATNNNNATC	1 cut(s)	639
BseBI	CCWGG	1 cut(s)	766
BseDI	CCNNGG	3 cut(s)	516, 692, 765
BseGI	GGATG	6 cut(s)	22, 97, 229, 558, 640, 880
BseJI	GATNNNNATC	1 cut(s)	639
BseLI	CCNNNNNNNGG	4 cut(s)	111, 213, 259, 719
BseMII	CTCAG	1 cut(s)	555
BseRI	GAGGAG	1 cut(s)	476
BseSI	GKGCMC	1 cut(s)	362
BseXI	GCAGC	5 cut(s)	129, 136, 139, 646, 686
BsgI	GTGCAG	1 cut(s)	239
Bsh1236I	CGCG	1 cut(s)	858
Bsh1285I	CGRYCG	1 cut(s)	343
BshFI	GGCC	2 cut(s)	601, 824
BsiEI	CGRYCG	1 cut(s)	343
BsiHKAI	GWGCWC	1 cut(s)	362
BsiHKCI	CYCGRG	1 cut(s)	614
BsiSI	CCGG	2 cut(s)	26, 112
BslFI	GGGAC	3 cut(s)	59, 167, 920
BslI	CCNNNNNNNGG	4 cut(s)	111, 213, 259, 719
BsmAI	GTCTC	3 cut(s)	221, 611, 701
BsmFI	GGGAC	3 cut(s)	59, 167, 920
BsnI	GGCC	2 cut(s)	601, 824
Bso31I	GGTCTC	1 cut(s)	701
BsoBI	CYCGRG	1 cut(s)	614
Bsp1286I	GDGCHC	1 cut(s)	362
Bsp1720I	GCTNAGC	2 cut(s)	186, 402
BspACI	CCGC	5 cut(s)	54, 162, 343, 512, 744
BspANI	GGCC	2 cut(s)	601, 824
BspCNI	CTCAG	1 cut(s)	554
BspFNI	CGCG	1 cut(s)	858
BspHI	TCATGA	1 cut(s)	412
BspLI	GGNNCC	1 cut(s)	81
BspTI	CTTAAG	1 cut(s)	383
BspTNI	GGTCTC	1 cut(s)	701
BssECI	CCNNGG	3 cut(s)	516, 692, 765
BssT1I	CCWWGG	2 cut(s)	516, 692
Bst2UI	CCWGG	1 cut(s)	766
Bst4CI	ACNGT	1 cut(s)	158
BstAFI	CTTAAG	1 cut(s)	383
BstC8I	GCNNGC	1 cut(s)	599
BstDEI	CTNAG	4 cut(s)	186, 402, 435, 541
BstF5I	GGATG	6 cut(s)	22, 97, 229, 558, 640, 880
BstFNI	CGCG	1 cut(s)	858
BstHHI	GCGC	2 cut(s)	252, 860
BstMAI	GTCTC	3 cut(s)	221, 611, 701
BstMCI	CGRYCG	1 cut(s)	343
BstMWI	GCNNNNNNNGC	3 cut(s)	656, 665, 674
BstNI	CCWGG	1 cut(s)	766
BstNSI	RCATGY	3 cut(s)	271, 584, 913
BstSCI	CCNGG	1 cut(s)	764
BstSLI	GKGCMC	1 cut(s)	362
BstUI	CGCG	1 cut(s)	858
BstV1I	GCAGC	5 cut(s)	129, 136, 139, 646, 686
BstV2I	GAAGAC	1 cut(s)	885
BsuRI	GGCC	2 cut(s)	601, 824
BtsCI	GGATG	6 cut(s)	22, 97, 229, 558, 640, 880
BtsI	GCAGTG	1 cut(s)	172
BtsIMutI	CAGTG	2 cut(s)	172, 360
Cac8I	GCNNGC	1 cut(s)	599
CciI	TCATGA	1 cut(s)	412
CfoI	GCGC	2 cut(s)	252, 860
Cfr13I	GGNCC	2 cut(s)	175, 628
Csp6I	GTAC	1 cut(s)	496
CviAII	CATG	6 cut(s)	64, 268, 413, 581, 632, 910
CviQI	GTAC	1 cut(s)	496
DdeI	CTNAG	4 cut(s)	186, 402, 435, 541
DrdI	GACNNNNNNGTC	1 cut(s)	887
DseDI	GACNNNNNNGTC	1 cut(s)	887
EciI	GGCGGA	1 cut(s)	501
Eco130I	CCWWGG	2 cut(s)	516, 692
Eco31I	GGTCTC	1 cut(s)	701
Eco47I	GGWCC	2 cut(s)	175, 628
Eco88I	CYCGRG	1 cut(s)	614
EcoRII	CCWGG	1 cut(s)	764
EcoT14I	CCWWGG	2 cut(s)	516, 692
ErhI	CCWWGG	2 cut(s)	516, 692
FaeI	CATG	6 cut(s)	67, 271, 416, 584, 635, 913
FaqI	GGGAC	3 cut(s)	59, 167, 920
FatI	CATG	6 cut(s)	63, 267, 412, 580, 631, 909
FauI	CCCGC	1 cut(s)	737
FauNDI	CATATG	1 cut(s)	739
Fnu4HI	GCNGC	7 cut(s)	55, 125, 128, 143, 163, 660, 675
FokI	GGATG	6 cut(s)	9, 104, 236, 565, 627, 887
Fsp4HI	GCNGC	7 cut(s)	55, 125, 128, 143, 163, 660, 675
GlaI	GCGC	2 cut(s)	251, 859
GluI	GCNGC	7 cut(s)	55, 125, 128, 143, 163, 660, 675
HaeIII	GGCC	2 cut(s)	601, 824
HapII	CCGG	2 cut(s)	26, 112
HhaI	GCGC	2 cut(s)	252, 860
Hin1II	CATG	6 cut(s)	67, 271, 416, 584, 635, 913
Hin6I	GCGC	2 cut(s)	250, 858
HinP1I	GCGC	2 cut(s)	250, 858
HinfI	GANTC	5 cut(s)	115, 229, 524, 730, 750
HpaII	CCGG	2 cut(s)	26, 112
HphI	GGTGA	4 cut(s)	101, 125, 737, 782
Hpy166II	GTNNAC	1 cut(s)	360
Hpy188I	TCNGA	6 cut(s)	13, 84, 234, 544, 783, 893
Hpy188III	TCNNGA	6 cut(s)	394, 413, 614, 616, 899, 938
Hpy8I	GTNNAC	1 cut(s)	360
HpyAV	CCTTC	5 cut(s)	44, 391, 871, 938, 941
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4V	TGCA	7 cut(s)	220, 360, 535, 578, 668, 674, 689
HpyF10VI	GCNNNNNNNGC	3 cut(s)	656, 665, 674
HpyF3I	CTNAG	4 cut(s)	186, 402, 435, 541
Hsp92II	CATG	6 cut(s)	67, 271, 416, 584, 635, 913
HspAI	GCGC	2 cut(s)	250, 858
LmnI	GCTCC	1 cut(s)	304
Lsp1109I	GCAGC	5 cut(s)	129, 136, 139, 646, 686
LweI	GCATC	3 cut(s)	139, 655, 799
MaeIII	GTNAC	1 cut(s)	760
MboII	GAAGA	2 cut(s)	569, 890
MfeI	CAATTG	1 cut(s)	137
MhlI	GDGCHC	1 cut(s)	362
MluCI	AATT	5 cut(s)	137, 697, 792, 885, 922
MlyI	GAGTC	2 cut(s)	223, 759
MmeI	TCCRAC	1 cut(s)	849
MroXI	GAANNNNTTC	1 cut(s)	335
MseI	TTAA	3 cut(s)	384, 816, 985
MslI	CAYNNNNRTG	1 cut(s)	411
MspCI	CTTAAG	1 cut(s)	383
MspI	CCGG	2 cut(s)	26, 112
MspR9I	CCNGG	1 cut(s)	766
MunI	CAATTG	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	766
MvnI	CGCG	1 cut(s)	858
MwoI	GCNNNNNNNGC	3 cut(s)	656, 665, 674
NdeI	CATATG	1 cut(s)	739
NlaIII	CATG	6 cut(s)	67, 271, 416, 584, 635, 913
NlaIV	GGNNCC	1 cut(s)	81
NmeAIII	GCCGAG	3 cut(s)	278, 410, 782
NspI	RCATGY	3 cut(s)	271, 584, 913
PaeR7I	CTCGAG	1 cut(s)	614
PagI	TCATGA	1 cut(s)	412
PciI	ACATGT	1 cut(s)	580
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PdmI	GAANNNNTTC	1 cut(s)	335
PfeI	GAWTC	3 cut(s)	115, 524, 730
PkrI	GCNGC	7 cut(s)	56, 126, 129, 144, 164, 661, 676
PleI	GAGTC	2 cut(s)	223, 758
PpsI	GAGTC	2 cut(s)	223, 758
PscI	ACATGT	1 cut(s)	580
PsiI	TTATAA	1 cut(s)	450
Psp6I	CCWGG	1 cut(s)	764
PspGI	CCWGG	1 cut(s)	764
PspN4I	GGNNCC	1 cut(s)	81
PspPI	GGNCC	2 cut(s)	175, 628
RsaI	GTAC	1 cut(s)	497
RsaNI	GTAC	1 cut(s)	496
RseI	CAYNNNNRTG	1 cut(s)	411
SaqAI	TTAA	3 cut(s)	384, 816, 985
SatI	GCNGC	7 cut(s)	55, 125, 128, 143, 163, 660, 675
Sau96I	GGNCC	2 cut(s)	175, 628
SchI	GAGTC	2 cut(s)	223, 759
ScrFI	CCNGG	1 cut(s)	766
SduI	GDGCHC	1 cut(s)	362
SfaNI	GCATC	3 cut(s)	139, 655, 799
Sfr274I	CTCGAG	1 cut(s)	614
SinI	GGWCC	2 cut(s)	175, 628
SlaI	CTCGAG	1 cut(s)	614
SmiMI	CAYNNNNRTG	1 cut(s)	411
SmlI	CTYRAG	2 cut(s)	383, 614
SmoI	CTYRAG	2 cut(s)	383, 614
Sse9I	AATT	5 cut(s)	137, 697, 792, 885, 922
SsiI	CCGC	5 cut(s)	54, 162, 343, 512, 744
StyD4I	CCNGG	1 cut(s)	764
StyI	CCWWGG	2 cut(s)	516, 692
TaaI	ACNGT	1 cut(s)	158
TaqI	TCGA	2 cut(s)	339, 615
TasI	AATT	5 cut(s)	137, 697, 792, 885, 922
TatI	WGTACW	1 cut(s)	495
TauI	GCSGC	2 cut(s)	57, 165
TfiI	GAWTC	3 cut(s)	115, 524, 730
Tru1I	TTAA	3 cut(s)	384, 816, 985
Tru9I	TTAA	3 cut(s)	384, 816, 985
TscAI	CASTG	2 cut(s)	172, 367
TseI	GCWGC	5 cut(s)	124, 127, 142, 659, 674
TspDTI	ATGAA	2 cut(s)	891, 923
TspRI	CASTG	2 cut(s)	172, 367
Vha464I	CTTAAG	1 cut(s)	383
VneI	GTGCAC	1 cut(s)	358
VpaK11BI	GGWCC	2 cut(s)	175, 628
XceI	RCATGY	3 cut(s)	271, 584, 913
XhoI	CTCGAG	1 cut(s)	614
XmnI	GAANNNNTTC	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.