Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0013235

Physical Location & Seq

Genomic Coordinates Forward (+)

26707670 .. 26711200

Gene Structure 3531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g24610.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGTACTTGTCTGAAAAGCCTCACCCAATTGATTTTCACAAAAACGACGAAGCAGACATGATGATCGAGGTGGTCTCGAGTGAGGATCTCTCGCAGACCCATCACCCAAATCATCATCAGCATCATCAGCAGCCTAACCAATTGCTGCTACTGGGTGACAGCAGCGGGGAGGACCACGAAGCGAAGCCGCAGCAGCAGAAGAAAAGAGCCGAGACATGGGTGCAGGACGAGACTCGGAGTCTGATAGCTCTGCGGAGAGAGATGGACGGCTTGTTCAACACTTCCAAGTCGAACAAGCATTTGTGGGAGCAGATTTCGGCGAAAATGAGGGAGAAAGGGTTCGACAGGAACCCGAATATGTGCACTGATAAGTGGAGGAACTTGCTTAAGGAGTTCAAGAAGGCTAAGCATCATCAGGATAAGGGGAGTGGGTCGGCCAAGATGTCGTATTATAAAGAGATTGAGGAGATTTTGAAGGACAGGAACAAGAATGGGCAGTATAAAAGTCCTACTCCACCCAAGGTTGATTCTTTCATGCAGTTTTCGGATAAAGGGATGGAAGATACAAACATTTCCTTTGCACATGTGGAAGCTAATGGCAGGCCAACACTCAATCTCGAGACAGGTTTGGACCATGATGGTCATCCTCTTGCCATTACTGTAGCTGATGCAGTTGCAGTGAACGGAGGTGCACCTTGGAATTGGAGAGAAACCCCTGAAAATGGTGGGGAGAATCAATCATATGGAGGGAGAGTCATAGTAGTAACCTGGGGTGATTATACTAGGAGGATAGGAATTGATGGCTCAGCAGATGCCATTAAGGAGGCCATCAAGTCTGCTTTTAGGTTGAGAACAAAACGTGCCTTCTGGTTGGAGGATGAAGACCAGATTGTCCGAAGTCTTGACAGGGACATGCCTCTGGGAAGTTACACCCTTCATCTTGACGAAGGTATGGCCGTGAAAGTTTGCCTGTATGATGAGCCAGACAACATACCGGTACATACAGAGGAGAAGATTTTTTACACTGAAGATGATTATCGTGAATTCCTAACCCGTCGTGGGTGGACATGTTTGCGGGAGTTTGATGGGTATAGAAATATTGAAAATATGGATGATCTCCGACCTGGTGCAATATATCGTGGTTTAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

384

Amino Acids

44.19

Weight (kDa)

5.74

Isoelectric Point (pI)

45.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	72 - 157	2.6e-22	Myb/SANT-like DNA-binding domain
Ubiquitin_GT-1	PF26214	251 - 311	1.4e-08	GT-1-like, ubiquitin-like domain
Ubiquitin_GT-1	PF26214	316 - 381	4.6e-34	GT-1-like, ubiquitin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13450 AT3G25990
fragaria_vesca	FvH4_4g24610 FvH4_4g24610
malus_domestica	MD13G1109800.v1.1 MD16G1109700.v1.1
prunus_persica	Prupe.1G235200_v2.0.a1
pyrus_communis	pycom13g09560
rosa_chinensis	RchiOBHm_Chr4g0431621
rosa_laevigata	RLG00000006903
rosa_multiflora	Rmu_ssc0000487.1_g000003
rosa_roxburghii	Rroxscaffold_5G00373080
rosa_rugosa	Rorug04G0251400
rosa_samantha	Rh4AG308000 Rh4BG315600 Rh4CG331100 Rh4DG310600
rosa_wichuraiana	Rw4G026710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	453
AasI	GACNNNNNNGTC	1 cut(s)	890
AciI	CCGC	4 cut(s)	165, 188, 253, 1075
AclWI	GGATC	1 cut(s)	93
AcoI	YGGCCR	2 cut(s)	435, 954
AcsI	RAATTY	1 cut(s)	1043
AcuI	CTGAAG	1 cut(s)	1047
AfaI	GTAC	2 cut(s)	5, 999
AfiI	CCNNNNNNNGG	3 cut(s)	216, 722, 1059
AflII	CTTAAG	1 cut(s)	386
AflIII	ACRYGT	2 cut(s)	583, 1067
AgeI	ACCGGT	1 cut(s)	994
AgsI	TTSAA	4 cut(s)	277, 397, 475, 1103
AhdI	GACNNNNNGTC	1 cut(s)	237
AjnI	CCWGG	2 cut(s)	767, 1123
AloI	GAACNNNNNNTCC	4 cut(s)	257, 289, 323, 355
AluBI	AGCT	3 cut(s)	248, 593, 665
AluI	AGCT	3 cut(s)	248, 593, 665
Alw21I	GWGCWC	2 cut(s)	365, 694
Alw26I	GTCTC	4 cut(s)	79, 206, 224, 614
Alw44I	GTGCAC	2 cut(s)	361, 690
AlwI	GGATC	1 cut(s)	93
Ama87I	CYCGRG	2 cut(s)	76, 617
AoxI	GGCC	4 cut(s)	435, 602, 825, 954
ApaLI	GTGCAC	2 cut(s)	361, 690
ApeKI	GCWGC	5 cut(s)	130, 145, 162, 190, 193
ApoI	RAATTY	1 cut(s)	1043
AsiGI	ACCGGT	1 cut(s)	994
Asp700I	GAANNNNTTC	1 cut(s)	338
AspS9I	GGNCC	2 cut(s)	172, 631
AsuHPI	GGTGA	4 cut(s)	14, 95, 167, 785
AvaI	CYCGRG	2 cut(s)	76, 617
AvaII	GGWCC	2 cut(s)	172, 631
BaeGI	GKGCMC	2 cut(s)	365, 694
BarI	GAAGNNNNNNTAC	2 cut(s)	1004, 1036
BbsI	GAAGAC	1 cut(s)	888
Bbv12I	GWGCWC	2 cut(s)	365, 694
BbvI	GCAGC	5 cut(s)	132, 142, 174, 202, 205
BccI	CCATC	7 cut(s)	108, 256, 550, 632, 794, 836, 1079
BceAI	ACGGC	2 cut(s)	283, 941
BciT130I	CCWGG	2 cut(s)	769, 1125
BcoDI	GTCTC	4 cut(s)	79, 206, 224, 614
BfaI	CTAG	1 cut(s)	783
BfmI	CTRYAG	1 cut(s)	660
BfrI	CTTAAG	1 cut(s)	386
BisI	GCNGC	6 cut(s)	131, 146, 163, 188, 191, 194
BlpI	GCTNAGC	2 cut(s)	405, 805
BlsI	GCNGC	6 cut(s)	132, 147, 164, 189, 192, 195
Bme1390I	CCNGG	2 cut(s)	769, 1125
Bme18I	GGWCC	2 cut(s)	172, 631
BmeRI	GACNNNNNGTC	1 cut(s)	237
BmeT110I	CYCGRG	2 cut(s)	76, 617
BmgT120I	GGNCC	2 cut(s)	172, 631
BmiI	GGNNCC	1 cut(s)	350
BmrFI	CCNGG	2 cut(s)	769, 1125
BmrI	ACTGGG	1 cut(s)	161
BmsI	GCATC	4 cut(s)	130, 418, 658, 802
BmuI	ACTGGG	1 cut(s)	161
BpiI	GAAGAC	1 cut(s)	888
BplI	GAGNNNNNCTC	4 cut(s)	59, 91, 74, 106
Bpu1102I	GCTNAGC	2 cut(s)	405, 805
BsaBI	GATNNNNATC	2 cut(s)	642, 1035
BsaI	GGTCTC	1 cut(s)	79
BsaJI	CCNNGG	3 cut(s)	519, 695, 768
BsaWI	WCCGGW	1 cut(s)	994
BsaXI	ACNNNNNCTCC	4 cut(s)	323, 353, 738, 768
Bsc4I	CCNNNNNNNGG	3 cut(s)	216, 722, 1059
Bse118I	RCCGGY	1 cut(s)	994
Bse1I	ACTGG	1 cut(s)	156
Bse8I	GATNNNNATC	2 cut(s)	642, 1035
BseBI	CCWGG	2 cut(s)	769, 1125
BseDI	CCNNGG	3 cut(s)	519, 695, 768
BseGI	GGATG	4 cut(s)	561, 643, 883, 1117
BseJI	GATNNNNATC	2 cut(s)	642, 1035
BseLI	CCNNNNNNNGG	3 cut(s)	216, 722, 1059
BseMII	CTCAG	1 cut(s)	819
BseNI	ACTGG	1 cut(s)	156
BseRI	GAGGAG	2 cut(s)	479, 1022
BseSI	GKGCMC	2 cut(s)	365, 694
BseXI	GCAGC	5 cut(s)	132, 142, 174, 202, 205
BsgI	GTGCAG	1 cut(s)	242
BshFI	GGCC	4 cut(s)	437, 604, 827, 956
BshTI	ACCGGT	1 cut(s)	994
BsiHKAI	GWGCWC	2 cut(s)	365, 694
BsiHKCI	CYCGRG	2 cut(s)	76, 617
BsiSI	CCGG	1 cut(s)	995
BslFI	GGGAC	1 cut(s)	923
BslI	CCNNNNNNNGG	3 cut(s)	216, 722, 1059
BsmAI	GTCTC	4 cut(s)	79, 206, 224, 614
BsmFI	GGGAC	1 cut(s)	923
BsnI	GGCC	4 cut(s)	437, 604, 827, 956
Bso31I	GGTCTC	1 cut(s)	79
BsoBI	CYCGRG	2 cut(s)	76, 617
Bsp1286I	GDGCHC	2 cut(s)	365, 694
Bsp143I	GATC	3 cut(s)	63, 85, 1114
Bsp1720I	GCTNAGC	2 cut(s)	405, 805
BspACI	CCGC	4 cut(s)	165, 188, 253, 1075
BspANI	GGCC	4 cut(s)	437, 604, 827, 956
BspCNI	CTCAG	1 cut(s)	818
BspLI	GGNNCC	1 cut(s)	350
BspPI	GGATC	1 cut(s)	93
BspTI	CTTAAG	1 cut(s)	386
BspTNI	GGTCTC	1 cut(s)	79
BsrFI	RCCGGY	1 cut(s)	994
BsrI	ACTGG	1 cut(s)	156
BssAI	RCCGGY	1 cut(s)	994
BssECI	CCNNGG	3 cut(s)	519, 695, 768
BssMI	GATC	3 cut(s)	63, 85, 1114
BssT1I	CCWWGG	2 cut(s)	519, 695
Bst2UI	CCWGG	2 cut(s)	769, 1125
Bst4CI	ACNGT	1 cut(s)	661
BstAFI	CTTAAG	1 cut(s)	386
BstC8I	GCNNGC	1 cut(s)	602
BstDEI	CTNAG	2 cut(s)	405, 805
BstF5I	GGATG	4 cut(s)	561, 643, 883, 1117
BstKTI	GATC	3 cut(s)	66, 88, 1117
BstMAI	GTCTC	4 cut(s)	79, 206, 224, 614
BstMBI	GATC	3 cut(s)	63, 85, 1114
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 193
BstNI	CCWGG	2 cut(s)	769, 1125
BstNSI	RCATGY	3 cut(s)	587, 916, 1071
BstSCI	CCNGG	2 cut(s)	767, 1123
BstSFI	CTRYAG	1 cut(s)	660
BstSLI	GKGCMC	2 cut(s)	365, 694
BstV1I	GCAGC	5 cut(s)	132, 142, 174, 202, 205
BstV2I	GAAGAC	1 cut(s)	888
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BsuRI	GGCC	4 cut(s)	437, 604, 827, 956
BtsCI	GGATG	4 cut(s)	561, 643, 883, 1117
BtsI	GCAGTG	1 cut(s)	684
BtsIMutI	CAGTG	3 cut(s)	363, 684, 1023
Cac8I	GCNNGC	1 cut(s)	602
Cfr10I	RCCGGY	1 cut(s)	994
Cfr13I	GGNCC	2 cut(s)	172, 631
CsiI	ACCWGGT	1 cut(s)	1123
Csp6I	GTAC	2 cut(s)	4, 998
CspAI	ACCGGT	1 cut(s)	994
CviAII	CATG	7 cut(s)	58, 216, 535, 584, 635, 913, 1068
CviQI	GTAC	2 cut(s)	4, 998
DdeI	CTNAG	2 cut(s)	405, 805
DpnI	GATC	3 cut(s)	65, 87, 1116
DpnII	GATC	3 cut(s)	63, 85, 1114
DrdI	GACNNNNNNGTC	1 cut(s)	890
DriI	GACNNNNNGTC	1 cut(s)	237
DseDI	GACNNNNNNGTC	1 cut(s)	890
EaeI	YGGCCR	2 cut(s)	435, 954
Eam1105I	GACNNNNNGTC	1 cut(s)	237
Eco130I	CCWWGG	2 cut(s)	519, 695
Eco31I	GGTCTC	1 cut(s)	79
Eco47I	GGWCC	2 cut(s)	172, 631
Eco57I	CTGAAG	1 cut(s)	1047
Eco88I	CYCGRG	2 cut(s)	76, 617
EcoRI	GAATTC	1 cut(s)	1043
EcoRII	CCWGG	2 cut(s)	767, 1123
EcoT14I	CCWWGG	2 cut(s)	519, 695
ErhI	CCWWGG	2 cut(s)	519, 695
FaeI	CATG	7 cut(s)	61, 219, 538, 587, 638, 916, 1071
FaqI	GGGAC	1 cut(s)	923
FatI	CATG	7 cut(s)	57, 215, 534, 583, 634, 912, 1067
FauI	CCCGC	2 cut(s)	158, 1068
FauNDI	CATATG	1 cut(s)	742
Fnu4HI	GCNGC	6 cut(s)	131, 146, 163, 188, 191, 194
FokI	GGATG	4 cut(s)	568, 630, 890, 1124
Fsp4HI	GCNGC	6 cut(s)	131, 146, 163, 188, 191, 194
FspBI	CTAG	1 cut(s)	783
GluI	GCNGC	6 cut(s)	131, 146, 163, 188, 191, 194
HaeIII	GGCC	4 cut(s)	437, 604, 827, 956
HapII	CCGG	1 cut(s)	995
Hin1II	CATG	7 cut(s)	61, 219, 538, 587, 638, 916, 1071
HinfI	GANTC	5 cut(s)	232, 238, 527, 733, 753
HpaII	CCGG	1 cut(s)	995
HphI	GGTGA	4 cut(s)	14, 95, 167, 785
Hpy166II	GTNNAC	4 cut(s)	363, 682, 692, 1065
Hpy188I	TCNGA	6 cut(s)	13, 237, 243, 547, 896, 1121
Hpy188III	TCNNGA	8 cut(s)	76, 397, 416, 617, 619, 902, 941, 1040
Hpy8I	GTNNAC	4 cut(s)	363, 682, 692, 1065
Hpy99I	CGWCG	2 cut(s)	50, 1059
HpyAV	CCTTC	5 cut(s)	394, 469, 874, 941, 944
HpyCH4III	ACNGT	1 cut(s)	661
HpyCH4IV	ACGT	1 cut(s)	859
HpyCH4V	TGCA	8 cut(s)	223, 363, 538, 581, 671, 677, 692, 1130
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 193
HpyF3I	CTNAG	2 cut(s)	405, 805
HpySE526I	ACGT	1 cut(s)	859
Hsp92II	CATG	7 cut(s)	61, 219, 538, 587, 638, 916, 1071
Kzo9I	GATC	3 cut(s)	63, 85, 1114
LmnI	GCTCC	1 cut(s)	307
Lsp1109I	GCAGC	5 cut(s)	132, 142, 174, 202, 205
LweI	GCATC	4 cut(s)	130, 418, 658, 802
MabI	ACCWGGT	1 cut(s)	1123
MaeI	CTAG	1 cut(s)	783
MaeII	ACGT	1 cut(s)	859
MaeIII	GTNAC	3 cut(s)	155, 763, 926
MalI	GATC	3 cut(s)	65, 87, 1116
MboI	GATC	3 cut(s)	63, 85, 1114
MboII	GAAGA	5 cut(s)	211, 572, 893, 1024, 1040
MfeI	CAATTG	2 cut(s)	27, 140
MflI	RGATCY	1 cut(s)	85
MhlI	GDGCHC	2 cut(s)	365, 694
MluCI	AATT	5 cut(s)	27, 140, 700, 795, 1043
MlyI	GAGTC	3 cut(s)	226, 247, 762
MmeI	TCCRAC	2 cut(s)	852, 1144
MroXI	GAANNNNTTC	1 cut(s)	338
MseI	TTAA	3 cut(s)	387, 819, 1145
MspA1I	CMGCKG	1 cut(s)	165
MspCI	CTTAAG	1 cut(s)	386
MspI	CCGG	1 cut(s)	995
MspR9I	CCNGG	2 cut(s)	769, 1125
MunI	CAATTG	2 cut(s)	27, 140
MvaI	CCWGG	2 cut(s)	769, 1125
MwoI	GCNNNNNNNGC	2 cut(s)	127, 193
NdeI	CATATG	1 cut(s)	742
NdeII	GATC	3 cut(s)	63, 85, 1114
NlaIII	CATG	7 cut(s)	61, 219, 538, 587, 638, 916, 1071
NlaIV	GGNNCC	1 cut(s)	350
NmeAIII	GCCGAG	1 cut(s)	235
NmuCI	GTSAC	1 cut(s)	155
NspI	RCATGY	3 cut(s)	587, 916, 1071
PaeR7I	CTCGAG	2 cut(s)	76, 617
PciI	ACATGT	2 cut(s)	583, 1067
PdmI	GAANNNNTTC	1 cut(s)	338
PfeI	GAWTC	2 cut(s)	527, 733
PinAI	ACCGGT	1 cut(s)	994
PkrI	GCNGC	6 cut(s)	132, 147, 164, 189, 192, 195
PleI	GAGTC	3 cut(s)	226, 246, 761
PpsI	GAGTC	3 cut(s)	226, 246, 761
PscI	ACATGT	2 cut(s)	583, 1067
PsiI	TTATAA	1 cut(s)	453
Psp6I	CCWGG	2 cut(s)	767, 1123
PspGI	CCWGG	2 cut(s)	767, 1123
PspN4I	GGNNCC	1 cut(s)	350
PspPI	GGNCC	2 cut(s)	172, 631
PsuI	RGATCY	1 cut(s)	85
RsaI	GTAC	2 cut(s)	5, 999
RsaNI	GTAC	2 cut(s)	4, 998
SaqAI	TTAA	3 cut(s)	387, 819, 1145
SatI	GCNGC	6 cut(s)	131, 146, 163, 188, 191, 194
Sau3AI	GATC	3 cut(s)	63, 85, 1114
Sau96I	GGNCC	2 cut(s)	172, 631
SchI	GAGTC	3 cut(s)	226, 247, 762
ScrFI	CCNGG	2 cut(s)	769, 1125
SduI	GDGCHC	2 cut(s)	365, 694
SexAI	ACCWGGT	1 cut(s)	1123
SfaNI	GCATC	4 cut(s)	130, 418, 658, 802
SfcI	CTRYAG	1 cut(s)	660
Sfr274I	CTCGAG	2 cut(s)	76, 617
SinI	GGWCC	2 cut(s)	172, 631
SlaI	CTCGAG	2 cut(s)	76, 617
SmlI	CTYRAG	3 cut(s)	76, 386, 617
SmoI	CTYRAG	3 cut(s)	76, 386, 617
Sse9I	AATT	5 cut(s)	27, 140, 700, 795, 1043
SsiI	CCGC	4 cut(s)	165, 188, 253, 1075
SspI	AATATT	1 cut(s)	1099
SspMI	CTAG	1 cut(s)	783
StyD4I	CCNGG	2 cut(s)	767, 1123
StyI	CCWWGG	2 cut(s)	519, 695
TaaI	ACNGT	1 cut(s)	661
TaiI	ACGT	1 cut(s)	862
TaqI	TCGA	5 cut(s)	66, 77, 290, 342, 618
TasI	AATT	5 cut(s)	27, 140, 700, 795, 1043
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	190
TfiI	GAWTC	2 cut(s)	527, 733
Tru1I	TTAA	3 cut(s)	387, 819, 1145
Tru9I	TTAA	3 cut(s)	387, 819, 1145
TscAI	CASTG	3 cut(s)	370, 684, 1030
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	5 cut(s)	130, 145, 162, 190, 193
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	3 cut(s)	523, 894, 926
TspGWI	ACGGA	1 cut(s)	699
TspRI	CASTG	3 cut(s)	370, 684, 1030
Vha464I	CTTAAG	1 cut(s)	386
VneI	GTGCAC	2 cut(s)	361, 690
VpaK11BI	GGWCC	2 cut(s)	172, 631
XapI	RAATTY	1 cut(s)	1043
XceI	RCATGY	3 cut(s)	587, 916, 1071
XhoI	CTCGAG	2 cut(s)	76, 617
XmnI	GAANNNNTTC	1 cut(s)	338
XspI	CTAG	1 cut(s)	783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.