Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013235

Physical Location & Seq

Genomic Coordinates Reverse (-)

9504677 .. 9506787

Gene Structure 2111 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G25990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGTTTGTTTCCGATAACAACAATCCTTCACGGGACATAAACATGATGATCGGCGATGTTACATCAAACGGAGATCTACAGCCACACCAGATCATCCTCGGAGAAAGCAGTGGAGGAGAGGATCATGAGATCATCAAAGCACCAAAGAAACGAGCAGAGACATGGGCACAAGACGAGACTCGAACCTTAATCTCATTACGGAGAGAAATGGACAATCTTTTCAACACTTCCAAATCTAACAAACATCTCTGGGAACAGATTTCTAAGAAAATGAGAGAGAAAGGGTTTGATCGATCACCATCTATGTGTACGGACAAGTGGAGGAACATATTGAAAGAGTTTAAGAAAGCTAAGCAACATGAAGATAAAGCAACAAGTGGAGGATCAACGAAGATGTCTTATTACAATGAGATTGAAGATATTTTCAGAGAAAGAAAGAAGAAAGTGGCATTCTATAAGAGTCCTGCTACTACTACACCATCTTCTGCTAAAGTTGATTCCTTTATGCAATTTACAGATAAAGGTTTTGAAGATACTGGTATTTCATTTACATCTGTTGAAGCTAATGGCAGGCCAACGCTAAATCTTGAAACGGAGCTTGATCATGATGGTCTTCCTCTCCCCATTGCTGCTGATCCCATCACAGCAAATGGAGTTCCTCCTTGGAATTGGAGAGACACCCCTGGAAATGGCGTTGATGGTCAGCCATTTGCTGGGAGGATCATAACGGTGAAATTTGGAGATTACACAAGACGAGTTGGGATTGATGGTACTGCTGAAGCAATTAAGGAAGCTATCAGATCCGCGTTTAGATTGAGAACAAGACGAGCTTTTTGGCTAGAAGATGAAGAACAGGTTATTCGCTCTCTTGACCGAGACATGCCTTTAGGGAACTATATACTCCGCATTGATGAAGGGATAGCCGTTAGAGTGTGCCACTATGATGAATCTGATCCGTTACCAGTCCATCAAGAGGAGAAGATATTCTACACCGAAGAAGATTACCGAGATTTCTTGGCTCGACGAGGATGGACATGTCTGAGAGAGTTTGACGCGTTTCAAAACATAGACAATATGGACGAGCTTCAATCCGGTCGCTTATACAGAGGAATGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

372

Amino Acids

42.78

Weight (kDa)

5.68

Isoelectric Point (pI)

54.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	54 - 141	1.9e-22	Myb/SANT-like DNA-binding domain
Ubiquitin_GT-1	PF26214	240 - 299	3e-08	GT-1-like, ubiquitin-like domain
Ubiquitin_GT-1	PF26214	305 - 370	9.3e-30	GT-1-like, ubiquitin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13450 AT3G25990
fragaria_vesca	FvH4_4g24610 FvH4_4g24610
malus_domestica	MD13G1109800.v1.1 MD16G1109700.v1.1
prunus_persica	Prupe.1G235200_v2.0.a1
pyrus_communis	pycom13g09560
rosa_chinensis	RchiOBHm_Chr4g0431621
rosa_laevigata	RLG00000006903
rosa_multiflora	Rmu_ssc0000487.1_g000003
rosa_roxburghii	Rroxscaffold_5G00373080
rosa_rugosa	Rorug04G0251400
rosa_samantha	Rh4AG308000 Rh4BG315600 Rh4CG331100 Rh4DG310600
rosa_wichuraiana	Rw4G026710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	713
AccII	CGCG	2 cut(s)	806, 1055
AciI	CCGC	2 cut(s)	804, 904
AclWI	GGATC	6 cut(s)	129, 391, 629, 728, 795, 947
AcsI	RAATTY	1 cut(s)	734
AcuI	CTGAAG	1 cut(s)	798
AfaI	GTAC	2 cut(s)	310, 772
AfiI	CCNNNNNNNGG	3 cut(s)	689, 713, 973
AflIII	ACRYGT	2 cut(s)	1034, 1053
AgsI	TTSAA	8 cut(s)	223, 334, 416, 530, 560, 590, 1061, 1088
AjnI	CCWGG	1 cut(s)	682
AluBI	AGCT	6 cut(s)	350, 563, 598, 794, 830, 1084
AluI	AGCT	6 cut(s)	350, 563, 598, 794, 830, 1084
Alw26I	GTCTC	4 cut(s)	152, 170, 669, 870
AlwI	GGATC	6 cut(s)	129, 391, 629, 728, 795, 947
AoxI	GGCC	1 cut(s)	572
ApeKI	GCWGC	1 cut(s)	629
ApoI	RAATTY	1 cut(s)	734
ArsI	GACNNNNNNTTYG	2 cut(s)	816, 848
Asp700I	GAANNNNTTC	1 cut(s)	983
AsuHPI	GGTGA	2 cut(s)	288, 742
BaeGI	GKGCMC	1 cut(s)	169
BarI	GAAGNNNNNNTAC	2 cut(s)	971, 1003
BbsI	GAAGAC	1 cut(s)	605
BbvI	GCAGC	1 cut(s)	616
BccI	CCATC	8 cut(s)	307, 487, 602, 647, 692, 761, 975, 1023
BceAI	ACGGC	1 cut(s)	908
BciT130I	CCWGG	1 cut(s)	684
BclI	TGATCA	1 cut(s)	601
BcoDI	GTCTC	4 cut(s)	152, 170, 669, 870
BfaI	CTAG	1 cut(s)	839
BfmI	CTRYAG	1 cut(s)	77
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	1 cut(s)	630
BlpI	GCTNAGC	1 cut(s)	351
BlsI	GCNGC	1 cut(s)	631
Bme1390I	CCNGG	1 cut(s)	684
BmrFI	CCNGG	1 cut(s)	684
BpiI	GAAGAC	1 cut(s)	605
Bpu1102I	GCTNAGC	1 cut(s)	351
Bsa29I	ATCGAT	1 cut(s)	292
BsaBI	GATNNNNATC	1 cut(s)	298
BsaJI	CCNNGG	3 cut(s)	97, 662, 682
BsaWI	WCCGGW	1 cut(s)	1091
Bsc4I	CCNNNNNNNGG	3 cut(s)	689, 713, 973
Bse1I	ACTGG	2 cut(s)	541, 962
Bse3DI	GCAATG	1 cut(s)	624
Bse8I	GATNNNNATC	1 cut(s)	298
BseBI	CCWGG	1 cut(s)	684
BseCI	ATCGAT	1 cut(s)	292
BseDI	CCNNGG	3 cut(s)	97, 662, 682
BseGI	GGATG	2 cut(s)	93, 1034
BseJI	GATNNNNATC	1 cut(s)	298
BseLI	CCNNNNNNNGG	3 cut(s)	689, 713, 973
BseMI	GCAATG	1 cut(s)	624
BseMII	CTCAG	1 cut(s)	1031
BseNI	ACTGG	2 cut(s)	541, 962
BseRI	GAGGAG	2 cut(s)	129, 989
BseSI	GKGCMC	1 cut(s)	169
BseXI	GCAGC	1 cut(s)	616
BseYI	CCCAGC	1 cut(s)	713
Bsh1236I	CGCG	2 cut(s)	806, 1055
Bsh1285I	CGRYCG	1 cut(s)	1096
BshFI	GGCC	1 cut(s)	574
BshVI	ATCGAT	1 cut(s)	292
BsiEI	CGRYCG	1 cut(s)	1096
BsiSI	CCGG	1 cut(s)	1092
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	3 cut(s)	689, 713, 973
BsmAI	GTCTC	4 cut(s)	152, 170, 669, 870
BsmFI	GGGAC	1 cut(s)	47
BsmI	GAATGC	1 cut(s)	449
BsnI	GGCC	1 cut(s)	574
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp1720I	GCTNAGC	1 cut(s)	351
BspACI	CCGC	2 cut(s)	804, 904
BspANI	GGCC	1 cut(s)	574
BspCNI	CTCAG	1 cut(s)	1032
BspDI	ATCGAT	1 cut(s)	292
BspFNI	CGCG	2 cut(s)	806, 1055
BspHI	TCATGA	2 cut(s)	124, 604
BspPI	GGATC	6 cut(s)	129, 391, 629, 728, 795, 947
BsrDI	GCAATG	1 cut(s)	624
BsrI	ACTGG	2 cut(s)	541, 962
BssECI	CCNNGG	3 cut(s)	97, 662, 682
BssT1I	CCWWGG	1 cut(s)	662
Bst2UI	CCWGG	1 cut(s)	684
Bst4CI	ACNGT	1 cut(s)	730
BstC8I	GCNNGC	1 cut(s)	572
BstDEI	CTNAG	3 cut(s)	264, 351, 1040
BstF5I	GGATG	2 cut(s)	93, 1034
BstFNI	CGCG	2 cut(s)	806, 1055
BstMAI	GTCTC	4 cut(s)	152, 170, 669, 870
BstMCI	CGRYCG	1 cut(s)	1096
BstNI	CCWGG	1 cut(s)	684
BstNSI	RCATGY	2 cut(s)	883, 1038
BstSCI	CCNGG	1 cut(s)	682
BstSFI	CTRYAG	1 cut(s)	77
BstSLI	GKGCMC	1 cut(s)	169
BstUI	CGCG	2 cut(s)	806, 1055
BstV1I	GCAGC	1 cut(s)	616
BstV2I	GAAGAC	1 cut(s)	605
BstX2I	RGATCY	2 cut(s)	73, 800
BstYI	RGATCY	2 cut(s)	73, 800
Bsu15I	ATCGAT	1 cut(s)	292
BsuRI	GGCC	1 cut(s)	574
BsuTUI	ATCGAT	1 cut(s)	292
BtgZI	GCGATG	1 cut(s)	69
BtsCI	GGATG	2 cut(s)	93, 1034
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	115
Cac8I	GCNNGC	1 cut(s)	572
CciI	TCATGA	2 cut(s)	124, 604
ClaI	ATCGAT	1 cut(s)	292
CseI	GACGC	1 cut(s)	1061
Csp6I	GTAC	2 cut(s)	309, 771
CviAII	CATG	7 cut(s)	43, 125, 162, 359, 605, 880, 1035
CviQI	GTAC	2 cut(s)	309, 771
DdeI	CTNAG	3 cut(s)	264, 351, 1040
Eco130I	CCWWGG	1 cut(s)	662
Eco57I	CTGAAG	1 cut(s)	798
EcoRII	CCWGG	1 cut(s)	682
EcoT14I	CCWWGG	1 cut(s)	662
ErhI	CCWWGG	1 cut(s)	662
FaeI	CATG	7 cut(s)	46, 128, 165, 362, 608, 883, 1038
FalI	AAGNNNNNCTT	2 cut(s)	814, 846
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	7 cut(s)	42, 124, 161, 358, 604, 879, 1034
FbaI	TGATCA	1 cut(s)	601
Fnu4HI	GCNGC	1 cut(s)	630
FokI	GGATG	2 cut(s)	80, 1041
Fsp4HI	GCNGC	1 cut(s)	630
FspBI	CTAG	1 cut(s)	839
GluI	GCNGC	1 cut(s)	630
GsaI	CCCAGC	1 cut(s)	717
HaeIII	GGCC	1 cut(s)	574
HapII	CCGG	1 cut(s)	1092
HgaI	GACGC	1 cut(s)	1061
Hin1II	CATG	7 cut(s)	46, 128, 165, 362, 608, 883, 1038
HinfI	GANTC	4 cut(s)	178, 460, 497, 947
HpaII	CCGG	1 cut(s)	1092
HphI	GGTGA	2 cut(s)	288, 742
Hpy166II	GTNNAC	1 cut(s)	309
Hpy188I	TCNGA	6 cut(s)	13, 101, 428, 800, 952, 1041
Hpy188III	TCNNGA	5 cut(s)	125, 587, 605, 869, 971
Hpy8I	GTNNAC	1 cut(s)	309
Hpy99I	CGWCG	1 cut(s)	1026
HpyAV	CCTTC	2 cut(s)	36, 908
HpyCH4III	ACNGT	1 cut(s)	730
HpyCH4V	TGCA	1 cut(s)	508
HpyF3I	CTNAG	3 cut(s)	264, 351, 1040
Hsp92II	CATG	7 cut(s)	46, 128, 165, 362, 608, 883, 1038
Ksp22I	TGATCA	1 cut(s)	601
LmnI	GCTCC	1 cut(s)	595
Lsp1109I	GCAGC	1 cut(s)	616
MaeI	CTAG	1 cut(s)	839
MaeIII	GTNAC	2 cut(s)	58, 957
MflI	RGATCY	2 cut(s)	73, 800
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	4 cut(s)	509, 667, 734, 783
MluI	ACGCGT	1 cut(s)	1053
MlyI	GAGTC	2 cut(s)	172, 469
MroXI	GAANNNNTTC	1 cut(s)	983
MseI	TTAA	3 cut(s)	188, 342, 786
MslI	CAYNNNNRTG	4 cut(s)	41, 304, 728, 942
MspI	CCGG	1 cut(s)	1092
MspR9I	CCNGG	1 cut(s)	684
Mva1269I	GAATGC	1 cut(s)	449
MvaI	CCWGG	1 cut(s)	684
MvnI	CGCG	2 cut(s)	806, 1055
NlaIII	CATG	7 cut(s)	46, 128, 165, 362, 608, 883, 1038
NspI	RCATGY	2 cut(s)	883, 1038
PagI	TCATGA	2 cut(s)	124, 604
PciI	ACATGT	1 cut(s)	1034
PctI	GAATGC	1 cut(s)	449
PdmI	GAANNNNTTC	1 cut(s)	983
PfeI	GAWTC	2 cut(s)	497, 947
PflMI	CCANNNNNTGG	1 cut(s)	713
PkrI	GCNGC	1 cut(s)	631
PleI	GAGTC	2 cut(s)	172, 468
PpsI	GAGTC	2 cut(s)	172, 468
PscI	ACATGT	1 cut(s)	1034
Psp6I	CCWGG	1 cut(s)	682
PspFI	CCCAGC	1 cut(s)	713
PspGI	CCWGG	1 cut(s)	682
PsuI	RGATCY	2 cut(s)	73, 800
RsaI	GTAC	2 cut(s)	310, 772
RsaNI	GTAC	2 cut(s)	309, 771
RseI	CAYNNNNRTG	4 cut(s)	41, 304, 728, 942
SaqAI	TTAA	3 cut(s)	188, 342, 786
SatI	GCNGC	1 cut(s)	630
SchI	GAGTC	2 cut(s)	172, 469
ScrFI	CCNGG	1 cut(s)	684
SduI	GDGCHC	1 cut(s)	169
SetI	ASST	9 cut(s)	188, 352, 526, 565, 600, 796, 832, 858, 1086
SfcI	CTRYAG	1 cut(s)	77
SmiMI	CAYNNNNRTG	4 cut(s)	41, 304, 728, 942
Sse9I	AATT	4 cut(s)	509, 667, 734, 783
SsiI	CCGC	2 cut(s)	804, 904
SspMI	CTAG	1 cut(s)	839
StyD4I	CCNGG	1 cut(s)	682
StyI	CCWWGG	1 cut(s)	662
TaaI	ACNGT	1 cut(s)	730
TaqI	TCGA	3 cut(s)	181, 292, 1021
TaqII	GACCGA	1 cut(s)	888
TasI	AATT	4 cut(s)	509, 667, 734, 783
TfiI	GAWTC	2 cut(s)	497, 947
Tru1I	TTAA	3 cut(s)	188, 342, 786
Tru9I	TTAA	3 cut(s)	188, 342, 786
TscAI	CASTG	1 cut(s)	115
TseI	GCWGC	1 cut(s)	629
TspDTI	ATGAA	5 cut(s)	375, 534, 861, 927, 960
TspGWI	ACGGA	5 cut(s)	84, 214, 326, 608, 945
TspRI	CASTG	1 cut(s)	115
Van91I	CCANNNNNTGG	1 cut(s)	713
XapI	RAATTY	1 cut(s)	734
XceI	RCATGY	2 cut(s)	883, 1038
XmnI	GAANNNNTTC	1 cut(s)	983
XspI	CTAG	1 cut(s)	839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.