Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000487.1

Orthogroup ID

OG0013235

Physical Location & Seq

Genomic Coordinates Forward (+)

1128 .. 4294

Gene Structure 3167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000487.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

atgtatttgtcggaaaagcctcacccggttgattttcacaaaggggacgaaggcggcgaggacatgatgattgaggtggttccgaatgaggatgcttcccaaacccatcaccggaatcatcagcagcatcaccaattgctgctattgggggacagcagcggcagtggggaggaccacgaagctaataagccccagaaaaagagagccgaaacttgggtgcaggatgagactcggagtttgatagccctgcgccgagaaatggacagcatgttcaacacttccaagtccaacaagcacttgtgggagcagatttcggcgaaaatgagggagaaagggttcgaccgcaatcccaatatgtgcactgacaagtggaggaacttgcttaaggagttcaagaaggccaagcataatcatgaccgggggagtggctccgctaagatgtcatattataaagagattgaggagattttgaaagaaagaaacaagaatggtcagtacaaatcccctactccgcccaaggttgattcttttatgcacttctcagataaagggatggaagatacaaacatttcctttgcacatgtggaagctaatggcaggccaacactcaatctcgagacaggtttggaccatgatggtcatcctcttgccattactgctgctgatgcagttgcagcaaatggagttgcaccttggaattggagagagacccctgaaaatggtggggagaatcaatcatatggcgggagagtcatagtagtaacctggggtgattatactcggaggattggaattgatggctcggcagatgccattaaggaggccatcaagtctgcttttaggttgagaacaaaacgcgccttctggttggaggatgaagatcaaattgtccgaagtcttgacagggacatgcctctgggaaattacacccttcatcttgacgaagggttggctgtaaaagtgtgcctgtatgatgagccagaaaacatacccgtacatacagaggagaagattttttacaccgaagatgattatcatgaattcctaacccgccgtgggtggacatgtttgcgggagtttgatgggtacagaaatatcgaaaatatggatgatcttcgacctggtgcaatatatcgtggtgtgagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

382

Amino Acids

43.93

Weight (kDa)

5.72

Isoelectric Point (pI)

48.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13450 AT3G25990
fragaria_vesca	FvH4_4g24610 FvH4_4g24610
malus_domestica	MD13G1109800.v1.1 MD16G1109700.v1.1
prunus_persica	Prupe.1G235200_v2.0.a1
pyrus_communis	pycom13g09560
rosa_chinensis	RchiOBHm_Chr4g0431621
rosa_laevigata	RLG00000006903
rosa_multiflora	Rmu_ssc0000487.1_g000003
rosa_roxburghii	Rroxscaffold_5G00373080
rosa_rugosa	Rorug04G0251400
rosa_samantha	Rh4AG308000 Rh4BG315600 Rh4CG331100 Rh4DG310600
rosa_wichuraiana	Rw4G026710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	450
AccII	CGCG	1 cut(s)	858
AciI	CCGC	8 cut(s)	54, 159, 343, 432, 512, 744, 1051, 1072
AcsI	RAATTY	1 cut(s)	1040
AfaI	GTAC	3 cut(s)	497, 996, 1088
AfiI	CCNNNNNNNGG	5 cut(s)	111, 213, 259, 719, 1056
AflII	CTTAAG	1 cut(s)	383
AflIII	ACRYGT	2 cut(s)	580, 1064
AgsI	TTSAA	3 cut(s)	274, 394, 472
AjnI	CCWGG	2 cut(s)	764, 1120
AloI	GAACNNNNNNTCC	4 cut(s)	254, 286, 320, 352
AluBI	AGCT	2 cut(s)	182, 590
AluI	AGCT	2 cut(s)	182, 590
Alw21I	GWGCWC	1 cut(s)	362
Alw26I	GTCTC	3 cut(s)	221, 611, 701
Alw44I	GTGCAC	1 cut(s)	358
Ama87I	CYCGRG	1 cut(s)	614
AoxI	GGCC	3 cut(s)	399, 599, 822
ApaLI	GTGCAC	1 cut(s)	358
ApeKI	GCWGC	5 cut(s)	124, 139, 156, 659, 674
ApoI	RAATTY	1 cut(s)	1040
ArsI	GACNNNNNNTTYG	2 cut(s)	220, 252
Asp700I	GAANNNNTTC	1 cut(s)	335
AspLEI	GCGC	2 cut(s)	252, 860
AspS9I	GGNCC	2 cut(s)	172, 628
AsuC2I	CCSGG	2 cut(s)	26, 419
AsuHPI	GGTGA	4 cut(s)	14, 101, 122, 782
AvaI	CYCGRG	1 cut(s)	614
AvaII	GGWCC	2 cut(s)	172, 628
BaeGI	GKGCMC	1 cut(s)	362
BarI	GAAGNNNNNNTAC	2 cut(s)	1001, 1033
Bbv12I	GWGCWC	1 cut(s)	362
BbvI	GCAGC	5 cut(s)	126, 136, 168, 646, 686
BccI	CCATC	6 cut(s)	114, 547, 629, 791, 833, 1076
BceAI	ACGGC	1 cut(s)	1038
BciT130I	CCWGG	2 cut(s)	766, 1122
BcnI	CCSGG	2 cut(s)	26, 419
BcoDI	GTCTC	3 cut(s)	221, 611, 701
BfrI	CTTAAG	1 cut(s)	383
BisI	GCNGC	7 cut(s)	55, 125, 140, 157, 160, 660, 675
BlsI	GCNGC	7 cut(s)	56, 126, 141, 158, 161, 661, 676
Bme1390I	CCNGG	4 cut(s)	26, 419, 766, 1122
Bme18I	GGWCC	2 cut(s)	172, 628
BmeT110I	CYCGRG	1 cut(s)	614
BmgT120I	GGNCC	2 cut(s)	172, 628
BmiI	GGNNCC	2 cut(s)	81, 430
BmrFI	CCNGG	4 cut(s)	26, 419, 766, 1122
BmsI	GCATC	4 cut(s)	82, 136, 655, 799
BpuMI	CCSGG	2 cut(s)	26, 419
BsaBI	GATNNNNATC	3 cut(s)	639, 879, 1032
BsaI	GGTCTC	1 cut(s)	701
BsaJI	CCNNGG	5 cut(s)	418, 516, 692, 765, 1054
BsaWI	WCCGGW	1 cut(s)	111
BsaXI	ACNNNNNCTCC	2 cut(s)	320, 350
Bsc4I	CCNNNNNNNGG	5 cut(s)	111, 213, 259, 719, 1056
Bse8I	GATNNNNATC	3 cut(s)	639, 879, 1032
BseBI	CCWGG	2 cut(s)	766, 1122
BseDI	CCNNGG	5 cut(s)	418, 516, 692, 765, 1054
BseGI	GGATG	6 cut(s)	97, 229, 558, 640, 880, 1114
BseJI	GATNNNNATC	3 cut(s)	639, 879, 1032
BseLI	CCNNNNNNNGG	5 cut(s)	111, 213, 259, 719, 1056
BseMII	CTCAG	1 cut(s)	555
BseRI	GAGGAG	2 cut(s)	476, 1019
BseSI	GKGCMC	1 cut(s)	362
BseXI	GCAGC	5 cut(s)	126, 136, 168, 646, 686
BsgI	GTGCAG	1 cut(s)	239
Bsh1236I	CGCG	1 cut(s)	858
Bsh1285I	CGRYCG	1 cut(s)	343
BshFI	GGCC	3 cut(s)	401, 601, 824
BsiEI	CGRYCG	1 cut(s)	343
BsiHKAI	GWGCWC	1 cut(s)	362
BsiHKCI	CYCGRG	1 cut(s)	614
BsiSI	CCGG	3 cut(s)	26, 112, 418
BslFI	GGGAC	3 cut(s)	59, 164, 920
BslI	CCNNNNNNNGG	5 cut(s)	111, 213, 259, 719, 1056
BsmAI	GTCTC	3 cut(s)	221, 611, 701
BsmFI	GGGAC	3 cut(s)	59, 164, 920
BsnI	GGCC	3 cut(s)	401, 601, 824
Bso31I	GGTCTC	1 cut(s)	701
BsoBI	CYCGRG	1 cut(s)	614
Bsp1286I	GDGCHC	1 cut(s)	362
Bsp143I	GATC	2 cut(s)	880, 1111
BspACI	CCGC	8 cut(s)	54, 159, 343, 432, 512, 744, 1051, 1072
BspANI	GGCC	3 cut(s)	401, 601, 824
BspCNI	CTCAG	1 cut(s)	554
BspFNI	CGCG	1 cut(s)	858
BspHI	TCATGA	2 cut(s)	412, 1036
BspLI	GGNNCC	2 cut(s)	81, 430
BspTI	CTTAAG	1 cut(s)	383
BspTNI	GGTCTC	1 cut(s)	701
BssECI	CCNNGG	5 cut(s)	418, 516, 692, 765, 1054
BssMI	GATC	2 cut(s)	880, 1111
BssT1I	CCWWGG	2 cut(s)	516, 692
Bst2UI	CCWGG	2 cut(s)	766, 1122
BstAFI	CTTAAG	1 cut(s)	383
BstC8I	GCNNGC	1 cut(s)	599
BstDEI	CTNAG	2 cut(s)	435, 541
BstDSI	CCRYGG	1 cut(s)	1054
BstF5I	GGATG	6 cut(s)	97, 229, 558, 640, 880, 1114
BstFNI	CGCG	1 cut(s)	858
BstHHI	GCGC	2 cut(s)	252, 860
BstKTI	GATC	2 cut(s)	883, 1114
BstMAI	GTCTC	3 cut(s)	221, 611, 701
BstMBI	GATC	2 cut(s)	880, 1111
BstMCI	CGRYCG	1 cut(s)	343
BstMWI	GCNNNNNNNGC	3 cut(s)	656, 665, 674
BstNI	CCWGG	2 cut(s)	766, 1122
BstNSI	RCATGY	4 cut(s)	271, 584, 913, 1068
BstSCI	CCNGG	4 cut(s)	24, 417, 764, 1120
BstSLI	GKGCMC	1 cut(s)	362
BstUI	CGCG	1 cut(s)	858
BstV1I	GCAGC	5 cut(s)	126, 136, 168, 646, 686
BsuRI	GGCC	3 cut(s)	401, 601, 824
BtgI	CCRYGG	1 cut(s)	1054
BtsCI	GGATG	6 cut(s)	97, 229, 558, 640, 880, 1114
BtsI	GCAGTG	1 cut(s)	169
BtsIMutI	CAGTG	2 cut(s)	169, 360
Cac8I	GCNNGC	1 cut(s)	599
CciI	TCATGA	2 cut(s)	412, 1036
CfoI	GCGC	2 cut(s)	252, 860
Cfr13I	GGNCC	2 cut(s)	172, 628
CsiI	ACCWGGT	1 cut(s)	1120
Csp6I	GTAC	3 cut(s)	496, 995, 1087
CviAII	CATG	8 cut(s)	64, 268, 413, 581, 632, 910, 1037, 1065
CviQI	GTAC	3 cut(s)	496, 995, 1087
DdeI	CTNAG	2 cut(s)	435, 541
DpnI	GATC	2 cut(s)	882, 1113
DpnII	GATC	2 cut(s)	880, 1111
EciI	GGCGGA	1 cut(s)	501
Eco130I	CCWWGG	2 cut(s)	516, 692
Eco31I	GGTCTC	1 cut(s)	701
Eco47I	GGWCC	2 cut(s)	172, 628
Eco88I	CYCGRG	1 cut(s)	614
EcoRI	GAATTC	1 cut(s)	1040
EcoRII	CCWGG	2 cut(s)	764, 1120
EcoT14I	CCWWGG	2 cut(s)	516, 692
ErhI	CCWWGG	2 cut(s)	516, 692
FaeI	CATG	8 cut(s)	67, 271, 416, 584, 635, 913, 1040, 1068
FaqI	GGGAC	3 cut(s)	59, 164, 920
FatI	CATG	8 cut(s)	63, 267, 412, 580, 631, 909, 1036, 1064
FauI	CCCGC	3 cut(s)	737, 1058, 1065
FauNDI	CATATG	1 cut(s)	739
Fnu4HI	GCNGC	7 cut(s)	55, 125, 140, 157, 160, 660, 675
FokI	GGATG	6 cut(s)	104, 236, 565, 627, 887, 1121
Fsp4HI	GCNGC	7 cut(s)	55, 125, 140, 157, 160, 660, 675
GlaI	GCGC	2 cut(s)	251, 859
GluI	GCNGC	7 cut(s)	55, 125, 140, 157, 160, 660, 675
HaeIII	GGCC	3 cut(s)	401, 601, 824
HapII	CCGG	3 cut(s)	26, 112, 418
HhaI	GCGC	2 cut(s)	252, 860
Hin1II	CATG	8 cut(s)	67, 271, 416, 584, 635, 913, 1040, 1068
Hin6I	GCGC	2 cut(s)	250, 858
HinP1I	GCGC	2 cut(s)	250, 858
HinfI	GANTC	5 cut(s)	115, 229, 524, 730, 750
HpaII	CCGG	3 cut(s)	26, 112, 418
HphI	GGTGA	4 cut(s)	14, 101, 122, 782
Hpy166II	GTNNAC	2 cut(s)	360, 1062
Hpy188I	TCNGA	6 cut(s)	13, 84, 234, 544, 783, 893
Hpy188III	TCNNGA	7 cut(s)	394, 413, 614, 616, 899, 938, 1037
Hpy8I	GTNNAC	2 cut(s)	360, 1062
HpyAV	CCTTC	5 cut(s)	44, 391, 871, 938, 941
HpyCH4V	TGCA	8 cut(s)	220, 360, 535, 578, 668, 674, 689, 1127
HpyF10VI	GCNNNNNNNGC	3 cut(s)	656, 665, 674
HpyF3I	CTNAG	2 cut(s)	435, 541
Hsp92II	CATG	8 cut(s)	67, 271, 416, 584, 635, 913, 1040, 1068
HspAI	GCGC	2 cut(s)	250, 858
Kzo9I	GATC	2 cut(s)	880, 1111
LmnI	GCTCC	2 cut(s)	304, 434
Lsp1109I	GCAGC	5 cut(s)	126, 136, 168, 646, 686
LweI	GCATC	4 cut(s)	82, 136, 655, 799
MabI	ACCWGGT	1 cut(s)	1120
MaeIII	GTNAC	1 cut(s)	760
MalI	GATC	2 cut(s)	882, 1113
MboI	GATC	2 cut(s)	880, 1111
MboII	GAAGA	5 cut(s)	569, 890, 1021, 1037, 1106
MfeI	CAATTG	1 cut(s)	134
MhlI	GDGCHC	1 cut(s)	362
MluCI	AATT	6 cut(s)	134, 697, 792, 885, 922, 1040
MlyI	GAGTC	2 cut(s)	223, 759
MmeI	TCCRAC	2 cut(s)	312, 849
MroXI	GAANNNNTTC	1 cut(s)	335
MseI	TTAA	2 cut(s)	384, 816
MslI	CAYNNNNRTG	1 cut(s)	411
MspA1I	CMGCKG	1 cut(s)	159
MspCI	CTTAAG	1 cut(s)	383
MspI	CCGG	3 cut(s)	26, 112, 418
MspR9I	CCNGG	4 cut(s)	26, 419, 766, 1122
MunI	CAATTG	1 cut(s)	134
MvaI	CCWGG	2 cut(s)	766, 1122
MvnI	CGCG	1 cut(s)	858
MwoI	GCNNNNNNNGC	3 cut(s)	656, 665, 674
NciI	CCSGG	2 cut(s)	26, 419
NdeI	CATATG	1 cut(s)	739
NdeII	GATC	2 cut(s)	880, 1111
NlaIII	CATG	8 cut(s)	67, 271, 416, 584, 635, 913, 1040, 1068
NlaIV	GGNNCC	2 cut(s)	81, 430
NmeAIII	GCCGAG	2 cut(s)	278, 782
NspI	RCATGY	4 cut(s)	271, 584, 913, 1068
PaeR7I	CTCGAG	1 cut(s)	614
PagI	TCATGA	2 cut(s)	412, 1036
PciI	ACATGT	2 cut(s)	580, 1064
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PdmI	GAANNNNTTC	1 cut(s)	335
PfeI	GAWTC	3 cut(s)	115, 524, 730
PkrI	GCNGC	7 cut(s)	56, 126, 141, 158, 161, 661, 676
PleI	GAGTC	2 cut(s)	223, 758
PpsI	GAGTC	2 cut(s)	223, 758
PscI	ACATGT	2 cut(s)	580, 1064
PsiI	TTATAA	1 cut(s)	450
Psp6I	CCWGG	2 cut(s)	764, 1120
PspGI	CCWGG	2 cut(s)	764, 1120
PspN4I	GGNNCC	2 cut(s)	81, 430
PspPI	GGNCC	2 cut(s)	172, 628
RsaI	GTAC	3 cut(s)	497, 996, 1088
RsaNI	GTAC	3 cut(s)	496, 995, 1087
RseI	CAYNNNNRTG	1 cut(s)	411
SaqAI	TTAA	2 cut(s)	384, 816
SatI	GCNGC	7 cut(s)	55, 125, 140, 157, 160, 660, 675
Sau3AI	GATC	2 cut(s)	880, 1111
Sau96I	GGNCC	2 cut(s)	172, 628
SchI	GAGTC	2 cut(s)	223, 759
ScrFI	CCNGG	4 cut(s)	26, 419, 766, 1122
SduI	GDGCHC	1 cut(s)	362
SetI	ASST	9 cut(s)	78, 184, 522, 592, 625, 694, 767, 845, 1123
SexAI	ACCWGGT	1 cut(s)	1120
SfaNI	GCATC	4 cut(s)	82, 136, 655, 799
Sfr274I	CTCGAG	1 cut(s)	614
SinI	GGWCC	2 cut(s)	172, 628
SlaI	CTCGAG	1 cut(s)	614
SmiMI	CAYNNNNRTG	1 cut(s)	411
SmlI	CTYRAG	2 cut(s)	383, 614
SmoI	CTYRAG	2 cut(s)	383, 614
Sse9I	AATT	6 cut(s)	134, 697, 792, 885, 922, 1040
SsiI	CCGC	8 cut(s)	54, 159, 343, 432, 512, 744, 1051, 1072
StyD4I	CCNGG	4 cut(s)	24, 417, 764, 1120
StyI	CCWWGG	2 cut(s)	516, 692
TaqI	TCGA	4 cut(s)	339, 615, 1098, 1117
TasI	AATT	6 cut(s)	134, 697, 792, 885, 922, 1040
TatI	WGTACW	1 cut(s)	495
TauI	GCSGC	2 cut(s)	57, 162
TfiI	GAWTC	3 cut(s)	115, 524, 730
Tru1I	TTAA	2 cut(s)	384, 816
Tru9I	TTAA	2 cut(s)	384, 816
TscAI	CASTG	2 cut(s)	169, 367
TseI	GCWGC	5 cut(s)	124, 139, 156, 659, 674
TspDTI	ATGAA	3 cut(s)	891, 923, 1053
TspRI	CASTG	2 cut(s)	169, 367
Vha464I	CTTAAG	1 cut(s)	383
VneI	GTGCAC	1 cut(s)	358
VpaK11BI	GGWCC	2 cut(s)	172, 628
XapI	RAATTY	1 cut(s)	1040
XceI	RCATGY	4 cut(s)	271, 584, 913, 1068
XhoI	CTCGAG	1 cut(s)	614
XmnI	GAANNNNTTC	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.