MD16G1109700.v1.1
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0013235
Physical Location & Seq
Reverse (-)
7707946 .. 7712074
4129 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1109700.v1.1.491

Sequence Viewer

Length: 1149 bp
ATGTATTTGTCGGAAAATGCTCGACCAATCGATTTCTACAAGGAGGAAGCCGGCCGGGACATGATGATGGAGGTGGTGGTCTCGAACGAGGACCTTCCCCAATCTCAATCCCAATCCCAAGCTCATCTTCACCAGCCGCCCCCGCAACAGATGCTTATGGGTGACAGCAGCGGTGAGGACCACGGAGTGAGGGCTCCGAAGAAGCGAGCCGAGACTTGGGTGCAGGACGAGACCCGAAGCTTAATAGCCCTGCGTCGCGGGATTGACGGCTTGTTCAACACCTCCAAGTCGAACAAGCACTTGTGGGAGCAGATTTCTGCTAAGATGAGACAGAAAGGGTTCGATCGGTCGCCGACGATGTGCACGGACAAGTGGAGGAACTTGCTGAAAGAGTTCAAGAAGGCTAAGCACCATGATAGGGGAAGTGGGTCAGCTAAGATGTCGTATTACAAGGAGATTGAGGAGATTTTGAAGGAGAGAAGCAAGAATACGCAGTACAAAAGCCCCACTCCCCCAAAGGTCGATTCTTTCGTGCCATTTTCAGATAAAGGTATTGAAGATGCAAGCATTTCGTTTGCACCTGTTGAAGCTAGTGGCAGGCCGGCACTCAATCTTGAAAGACGTTTGGATCATGATGGTCATCCTCTTGCCATCACTGCAGCTGATGCAGTTACAGCAGGTGGAGTTCCACCGTGGAATTGGAGAGAAACCCCGGGAAATGGTGGGGAGGGTCAAGCATATGGTGGTAGAGTCATATTAGTCAACTGGGGTGACTATACTAGAAGGATTGGTATCGATGGCACCGCAGATGCCATTAAGGATGCAATTAAGTCTGCTTTTAGGTTGAGAACAAAACGCTCATTCTGGTTGGAGGATGAAGACCAGATAGTCCGAAGTCTTGACAGGGACATGCCTTTGGGGAATTACACTCTTCATCTTGATGAAGGGGTGGCCATCAAAGTATGCCTCTATGACGAGTCGGACCACATACCAGTACACACAGAGGAGAAGCTTTTCTACACAGAAGAAGATTATCGCGAGTTTCTGTCCCGCCGGGGGTGGTCGTGTCTAAGGGAGTTTGACGGGTACAGAAATATTGAAAATATGGACGACCTTCGCCCGGGTGCAATATACCGCGGTGTAAGTTGA

Protein Analysis

383

Amino Acids

43.57

Weight (kDa)

6.05

Isoelectric Point (pI)

62.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 72 - 156 1.2e-22 Myb/SANT-like DNA-binding domain
Ubiquitin_GT-1 PF26214 250 - 310 1.7e-08 GT-1-like, ubiquitin-like domain
Ubiquitin_GT-1 PF26214 315 - 380 7.7e-34 GT-1-like, ubiquitin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013235)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13450 AT3G25990
fragaria_vesca FvH4_4g24610 FvH4_4g24610
malus_domestica MD13G1109800.v1.1 MD16G1109700.v1.1
prunus_persica Prupe.1G235200_v2.0.a1
pyrus_communis pycom13g09560
rosa_chinensis RchiOBHm_Chr4g0431621
rosa_laevigata RLG00000006903
rosa_multiflora Rmu_ssc0000487.1_g000003
rosa_roxburghii Rroxscaffold_5G00373080
rosa_rugosa Rorug04G0251400
rosa_samantha Rh4AG308000 Rh4BG315600 Rh4CG331100 Rh4DG310600
rosa_wichuraiana Rw4G026710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 668
AasI GACNNNNNNGTC 1 cut(s) 887
Acc36I ACCTGC 1 cut(s) 668
AccB1I GGYRCC 1 cut(s) 800
AccII CGCG 3 cut(s) 258, 1038, 1137
AciI CCGC 8 cut(s) 137, 143, 171, 258, 804, 1051, 1135, 1137
AclWI GGATC 1 cut(s) 636
AcoI YGGCCR 2 cut(s) 52, 951
AdeI CACNNNGTG 1 cut(s) 187
AfaI GTAC 3 cut(s) 497, 996, 1088
AfiI CCNNNNNNNGG 5 cut(s) 216, 418, 719, 1056, 1120
AgsI TTSAA 7 cut(s) 277, 397, 472, 557, 587, 617, 1100
AjuI GAANNNNNNNTTGG 4 cut(s) 111, 143, 508, 540
AluBI AGCT 6 cut(s) 122, 240, 434, 590, 662, 1012
AluI AGCT 6 cut(s) 122, 240, 434, 590, 662, 1012
Alw21I GWGCWC 1 cut(s) 365
Alw26I GTCTC 4 cut(s) 85, 206, 224, 322
Alw44I GTGCAC 1 cut(s) 361
AlwI GGATC 1 cut(s) 636
Ama87I CYCGRG 2 cut(s) 712, 1120
AoxI GGCC 3 cut(s) 52, 599, 951
ApaLI GTGCAC 1 cut(s) 361
ApeKI GCWGC 2 cut(s) 168, 659
Asp700I GAANNNNTTC 3 cut(s) 338, 392, 1013
AspS9I GGNCC 3 cut(s) 91, 178, 982
AsuC2I CCSGG 6 cut(s) 56, 713, 714, 1055, 1121, 1122
AsuHPI GGTGA 4 cut(s) 122, 173, 185, 782
AvaI CYCGRG 2 cut(s) 712, 1120
AvaII GGWCC 3 cut(s) 91, 178, 982
BaeGI GKGCMC 1 cut(s) 365
BalI TGGCCA 1 cut(s) 953
BanI GGYRCC 1 cut(s) 800
BanII GRGCYC 1 cut(s) 196
BarI GAAGNNNNNNTAC 4 cut(s) 472, 504, 1001, 1033
BbsI GAAGAC 1 cut(s) 885
Bbv12I GWGCWC 1 cut(s) 365
BbvI GCAGC 2 cut(s) 180, 671
BccI CCATC 5 cut(s) 61, 629, 659, 791, 962
BceAI ACGGC 1 cut(s) 283
BcgI CGANNNNNNTGC 2 cut(s) 552, 586
BcnI CCSGG 6 cut(s) 56, 713, 714, 1055, 1121, 1122
BcoDI GTCTC 4 cut(s) 85, 206, 224, 322
BfaI CTAG 2 cut(s) 591, 780
BfmI CTRYAG 1 cut(s) 657
BfuAI ACCTGC 1 cut(s) 668
BisI GCNGC 3 cut(s) 137, 169, 660
BlpI GCTNAGC 1 cut(s) 405
BlsI GCNGC 3 cut(s) 138, 170, 661
Bme1390I CCNGG 6 cut(s) 56, 713, 714, 1055, 1121, 1122
Bme18I GGWCC 3 cut(s) 91, 178, 982
BmeT110I CYCGRG 2 cut(s) 712, 1120
BmgT120I GGNCC 3 cut(s) 91, 178, 982
BmiI GGNNCC 2 cut(s) 195, 802
BmrFI CCNGG 6 cut(s) 56, 713, 714, 1055, 1121, 1122
BmrI ACTGGG 1 cut(s) 775
BmsI GCATC 5 cut(s) 141, 550, 655, 799, 811
BmuI ACTGGG 1 cut(s) 775
BpiI GAAGAC 1 cut(s) 885
Bpu1102I GCTNAGC 1 cut(s) 405
BpuMI CCSGG 6 cut(s) 56, 713, 714, 1055, 1121, 1122
Bsa29I ATCGAT 2 cut(s) 30, 795
BsaBI GATNNNNATC 2 cut(s) 639, 791
BsaI GGTCTC 2 cut(s) 85, 224
BsaJI CCNNGG 7 cut(s) 181, 692, 711, 712, 1054, 1120, 1135
Bsc4I CCNNNNNNNGG 5 cut(s) 216, 418, 719, 1056, 1120
Bse118I RCCGGY 2 cut(s) 50, 601
Bse1I ACTGG 2 cut(s) 770, 992
Bse8I GATNNNNATC 2 cut(s) 639, 791
BseCI ATCGAT 2 cut(s) 30, 795
BseDI CCNNGG 7 cut(s) 181, 692, 711, 712, 1054, 1120, 1135
BseGI GGATG 3 cut(s) 640, 826, 880
BseJI GATNNNNATC 2 cut(s) 639, 791
BseLI CCNNNNNNNGG 5 cut(s) 216, 418, 719, 1056, 1120
BseNI ACTGG 2 cut(s) 770, 992
BseRI GAGGAG 2 cut(s) 476, 1019
BseSI GKGCMC 1 cut(s) 365
BseX3I CGGCCG 1 cut(s) 52
BseXI GCAGC 2 cut(s) 180, 671
BsgI GTGCAG 1 cut(s) 242
Bsh1236I CGCG 3 cut(s) 258, 1038, 1137
Bsh1285I CGRYCG 3 cut(s) 55, 346, 350
BshFI GGCC 3 cut(s) 54, 601, 953
BshNI GGYRCC 1 cut(s) 800
BshVI ATCGAT 2 cut(s) 30, 795
BsiEI CGRYCG 3 cut(s) 55, 346, 350
BsiHKAI GWGCWC 1 cut(s) 365
BsiHKCI CYCGRG 2 cut(s) 712, 1120
BsiSI CCGG 6 cut(s) 51, 55, 602, 713, 1054, 1121
BslFI GGGAC 3 cut(s) 71, 920, 1033
BslI CCNNNNNNNGG 5 cut(s) 216, 418, 719, 1056, 1120
BsmAI GTCTC 4 cut(s) 85, 206, 224, 322
BsmFI GGGAC 3 cut(s) 71, 920, 1033
BsnI GGCC 3 cut(s) 54, 601, 953
Bso31I GGTCTC 2 cut(s) 85, 224
BsoBI CYCGRG 2 cut(s) 712, 1120
Bsp1286I GDGCHC 2 cut(s) 196, 365
Bsp143I GATC 2 cut(s) 343, 628
Bsp1720I GCTNAGC 1 cut(s) 405
Bsp68I TCGCGA 1 cut(s) 1038
BspACI CCGC 8 cut(s) 137, 143, 171, 258, 804, 1051, 1135, 1137
BspANI GGCC 3 cut(s) 54, 601, 953
BspDI ATCGAT 2 cut(s) 30, 795
BspFNI CGCG 3 cut(s) 258, 1038, 1137
BspHI TCATGA 1 cut(s) 631
BspLI GGNNCC 2 cut(s) 195, 802
BspMAI CTGCAG 1 cut(s) 661
BspMI ACCTGC 1 cut(s) 668
BspPI GGATC 1 cut(s) 636
BspT107I GGYRCC 1 cut(s) 800
BspTNI GGTCTC 2 cut(s) 85, 224
BsrFI RCCGGY 2 cut(s) 50, 601
BsrI ACTGG 2 cut(s) 770, 992
BssAI RCCGGY 2 cut(s) 50, 601
BssECI CCNNGG 7 cut(s) 181, 692, 711, 712, 1054, 1120, 1135
BssMI GATC 2 cut(s) 343, 628
Bst4CI ACNGT 1 cut(s) 693
Bst6I CTCTTC 1 cut(s) 936
BstAPI GCANNNNNTGC 2 cut(s) 151, 665
BstC8I GCNNGC 5 cut(s) 52, 207, 565, 599, 603
BstDEI CTNAG 4 cut(s) 321, 405, 435, 1070
BstDSI CCRYGG 3 cut(s) 181, 692, 1135
BstF5I GGATG 3 cut(s) 640, 826, 880
BstFNI CGCG 3 cut(s) 258, 1038, 1137
BstKTI GATC 2 cut(s) 346, 631
BstMAI GTCTC 4 cut(s) 85, 206, 224, 322
BstMBI GATC 2 cut(s) 343, 628
BstMCI CGRYCG 3 cut(s) 55, 346, 350
BstMWI GCNNNNNNNGC 5 cut(s) 142, 151, 656, 665, 674
BstNSI RCATGY 1 cut(s) 913
BstSCI CCNGG 6 cut(s) 54, 711, 712, 1053, 1119, 1120
BstSFI CTRYAG 1 cut(s) 657
BstSLI GKGCMC 1 cut(s) 365
BstUI CGCG 3 cut(s) 258, 1038, 1137
BstV1I GCAGC 2 cut(s) 180, 671
BstV2I GAAGAC 1 cut(s) 885
BstZI CGGCCG 1 cut(s) 52
Bsu15I ATCGAT 2 cut(s) 30, 795
BsuRI GGCC 3 cut(s) 54, 601, 953
BsuTUI ATCGAT 2 cut(s) 30, 795
BtgI CCRYGG 3 cut(s) 181, 692, 1135
BtsCI GGATG 3 cut(s) 640, 826, 880
BtsI GCAGTG 1 cut(s) 654
BtsIMutI CAGTG 1 cut(s) 654
BtuMI TCGCGA 1 cut(s) 1038
BveI ACCTGC 1 cut(s) 668
Cac8I GCNNGC 5 cut(s) 52, 207, 565, 599, 603
CciI TCATGA 1 cut(s) 631
Cfr10I RCCGGY 2 cut(s) 50, 601
Cfr13I GGNCC 3 cut(s) 91, 178, 982
Cfr42I CCGCGG 1 cut(s) 1138
Cfr9I CCCGGG 2 cut(s) 712, 1120
ClaI ATCGAT 2 cut(s) 30, 795
CseI GACGC 1 cut(s) 242
Csp6I GTAC 3 cut(s) 496, 995, 1087
CviAII CATG 4 cut(s) 61, 413, 632, 910
CviQI GTAC 3 cut(s) 496, 995, 1087
DdeI CTNAG 4 cut(s) 321, 405, 435, 1070
DpnI GATC 2 cut(s) 345, 630
DpnII GATC 2 cut(s) 343, 628
DraIII CACNNNGTG 1 cut(s) 187
DrdI GACNNNNNNGTC 1 cut(s) 887
DseDI GACNNNNNNGTC 1 cut(s) 887
EaeI YGGCCR 2 cut(s) 52, 951
EagI CGGCCG 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 936
EarI CTCTTC 1 cut(s) 936
EclXI CGGCCG 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 196
Eco31I GGTCTC 2 cut(s) 85, 224
Eco47I GGWCC 3 cut(s) 91, 178, 982
Eco52I CGGCCG 1 cut(s) 52
Eco88I CYCGRG 2 cut(s) 712, 1120
EcoO109I RGGNCCY 1 cut(s) 91
EcoT38I GRGCYC 1 cut(s) 196
FaeI CATG 4 cut(s) 64, 416, 635, 913
FalI AAGNNNNNCTT 2 cut(s) 111, 143
FaqI GGGAC 3 cut(s) 71, 920, 1033
FatI CATG 4 cut(s) 60, 412, 631, 909
FauI CCCGC 3 cut(s) 150, 251, 1058
FauNDI CATATG 1 cut(s) 739
Fnu4HI GCNGC 3 cut(s) 137, 169, 660
FokI GGATG 3 cut(s) 627, 833, 887
FriOI GRGCYC 1 cut(s) 196
Fsp4HI GCNGC 3 cut(s) 137, 169, 660
FspBI CTAG 2 cut(s) 591, 780
GluI GCNGC 3 cut(s) 137, 169, 660
HaeIII GGCC 3 cut(s) 54, 601, 953
HapII CCGG 6 cut(s) 51, 55, 602, 713, 1054, 1121
HgaI GACGC 1 cut(s) 242
Hin1II CATG 4 cut(s) 64, 416, 635, 913
HincII GTYRAC 1 cut(s) 763
HindII GTYRAC 1 cut(s) 763
HindIII AAGCTT 2 cut(s) 238, 1010
HinfI GANTC 3 cut(s) 524, 750, 977
HpaII CCGG 6 cut(s) 51, 55, 602, 713, 1054, 1121
HphI GGTGA 4 cut(s) 122, 173, 185, 782
Hpy166II GTNNAC 3 cut(s) 363, 763, 997
Hpy188I TCNGA 5 cut(s) 13, 198, 544, 893, 982
Hpy188III TCNNGA 7 cut(s) 82, 397, 614, 632, 899, 938, 1037
Hpy8I GTNNAC 3 cut(s) 363, 763, 997
Hpy99I CGWCG 2 cut(s) 258, 358
HpyAV CCTTC 6 cut(s) 104, 394, 466, 777, 938, 1124
HpyCH4III ACNGT 1 cut(s) 693
HpyCH4IV ACGT 1 cut(s) 622
HpyCH4V TGCA 8 cut(s) 223, 363, 563, 578, 659, 668, 824, 1127
HpyF10VI GCNNNNNNNGC 5 cut(s) 142, 151, 656, 665, 674
HpyF3I CTNAG 4 cut(s) 321, 405, 435, 1070
HpySE526I ACGT 1 cut(s) 622
Hsp92II CATG 4 cut(s) 64, 416, 635, 913
KroI GCCGGC 2 cut(s) 50, 601
KroNI GCCGGC 2 cut(s) 52, 603
KspI CCGCGG 1 cut(s) 1138
Kzo9I GATC 2 cut(s) 343, 628
LmnI GCTCC 2 cut(s) 199, 307
Lsp1109I GCAGC 2 cut(s) 180, 671
LweI GCATC 5 cut(s) 141, 550, 655, 799, 811
MaeI CTAG 2 cut(s) 591, 780
MaeII ACGT 1 cut(s) 622
MaeIII GTNAC 3 cut(s) 161, 670, 770
MalI GATC 2 cut(s) 345, 630
MboI GATC 2 cut(s) 343, 628
MboII GAAGA 7 cut(s) 119, 211, 569, 890, 923, 1037, 1040
MhlI GDGCHC 2 cut(s) 196, 365
MlsI TGGCCA 1 cut(s) 953
MluCI AATT 3 cut(s) 697, 825, 922
MluNI TGGCCA 1 cut(s) 953
MlyI GAGTC 2 cut(s) 759, 986
MmeI TCCRAC 2 cut(s) 849, 960
Mox20I TGGCCA 1 cut(s) 953
MroNI GCCGGC 2 cut(s) 50, 601
MroXI GAANNNNTTC 3 cut(s) 338, 392, 1013
MscI TGGCCA 1 cut(s) 953
MseI TTAA 3 cut(s) 242, 816, 828
MslI CAYNNNNRTG 2 cut(s) 65, 939
Msp20I TGGCCA 1 cut(s) 953
MspA1I CMGCKG 3 cut(s) 171, 662, 1137
MspI CCGG 6 cut(s) 51, 55, 602, 713, 1054, 1121
MspR9I CCNGG 6 cut(s) 56, 713, 714, 1055, 1121, 1122
MvnI CGCG 3 cut(s) 258, 1038, 1137
MwoI GCNNNNNNNGC 5 cut(s) 142, 151, 656, 665, 674
NaeI GCCGGC 2 cut(s) 52, 603
NciI CCSGG 6 cut(s) 56, 713, 714, 1055, 1121, 1122
NdeI CATATG 1 cut(s) 739
NdeII GATC 2 cut(s) 343, 628
NgoMIV GCCGGC 2 cut(s) 50, 601
NlaIII CATG 4 cut(s) 64, 416, 635, 913
NlaIV GGNNCC 2 cut(s) 195, 802
NmeAIII GCCGAG 1 cut(s) 235
NmuCI GTSAC 2 cut(s) 161, 770
NruI TCGCGA 1 cut(s) 1038
NspI RCATGY 1 cut(s) 913
PagI TCATGA 1 cut(s) 631
PaqCI CACCTGC 1 cut(s) 668
PcsI WCGNNNNNNNCGW 1 cut(s) 528
PdiI GCCGGC 2 cut(s) 52, 603
PdmI GAANNNNTTC 3 cut(s) 338, 392, 1013
PfeI GAWTC 1 cut(s) 524
PkrI GCNGC 3 cut(s) 138, 170, 661
Ple19I CGATCG 1 cut(s) 346
PleI GAGTC 2 cut(s) 758, 985
PpsI GAGTC 2 cut(s) 758, 985
PpuMI RGGWCCY 1 cut(s) 91
Psp5II RGGWCCY 1 cut(s) 91
PspN4I GGNNCC 2 cut(s) 195, 802
PspPI GGNCC 3 cut(s) 91, 178, 982
PspPPI RGGWCCY 1 cut(s) 91
PstI CTGCAG 1 cut(s) 661
PvuI CGATCG 1 cut(s) 346
PvuII CAGCTG 1 cut(s) 662
RruI TCGCGA 1 cut(s) 1038
RsaI GTAC 3 cut(s) 497, 996, 1088
RsaNI GTAC 3 cut(s) 496, 995, 1087
RseI CAYNNNNRTG 2 cut(s) 65, 939
SacII CCGCGG 1 cut(s) 1138
SaqAI TTAA 3 cut(s) 242, 816, 828
SatI GCNGC 3 cut(s) 137, 169, 660
Sau3AI GATC 2 cut(s) 343, 628
Sau96I GGNCC 3 cut(s) 91, 178, 982
SchI GAGTC 2 cut(s) 759, 986
ScrFI CCNGG 6 cut(s) 56, 713, 714, 1055, 1121, 1122
SduI GDGCHC 2 cut(s) 196, 365
SfaNI GCATC 5 cut(s) 141, 550, 655, 799, 811
SfcI CTRYAG 1 cut(s) 657
Sfr303I CCGCGG 1 cut(s) 1138
SgrBI CCGCGG 1 cut(s) 1138
SinI GGWCC 3 cut(s) 91, 178, 982
SmaI CCCGGG 2 cut(s) 714, 1122
SmiMI CAYNNNNRTG 2 cut(s) 65, 939
Sse9I AATT 3 cut(s) 697, 825, 922
SsiI CCGC 8 cut(s) 137, 143, 171, 258, 804, 1051, 1135, 1137
SspI AATATT 1 cut(s) 1096
SspMI CTAG 2 cut(s) 591, 780
StyD4I CCNGG 6 cut(s) 54, 711, 712, 1053, 1119, 1120
TaaI ACNGT 1 cut(s) 693
TaiI ACGT 1 cut(s) 625
TaqI TCGA 7 cut(s) 22, 30, 83, 290, 342, 522, 795
TaqII GACCGA 1 cut(s) 336
TasI AATT 3 cut(s) 697, 825, 922
TatI WGTACW 2 cut(s) 495, 994
TauI GCSGC 1 cut(s) 139
TfiI GAWTC 1 cut(s) 524
Tru1I TTAA 3 cut(s) 242, 816, 828
Tru9I TTAA 3 cut(s) 242, 816, 828
TscAI CASTG 1 cut(s) 661
TseFI GTSAC 2 cut(s) 161, 770
TseI GCWGC 2 cut(s) 168, 659
Tsp45I GTSAC 2 cut(s) 161, 770
TspDTI ATGAA 3 cut(s) 891, 923, 957
TspGWI ACGGA 2 cut(s) 198, 380
TspMI CCCGGG 2 cut(s) 712, 1120
TspRI CASTG 1 cut(s) 661
VneI GTGCAC 1 cut(s) 361
VpaK11BI GGWCC 3 cut(s) 91, 178, 982
XceI RCATGY 1 cut(s) 913
XcmI CCANNNNNNNNNTGG 1 cut(s) 696
XmaI CCCGGG 2 cut(s) 712, 1120
XmnI GAANNNNTTC 3 cut(s) 338, 392, 1013
XspI CTAG 2 cut(s) 591, 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.