AT1G13610

Alpha beta hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011268
Physical Location & Seq
Reverse (-)
4663831 .. 4666130
2300 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G13610.1

Sequence Viewer

Length: 1077 bp
ATGGGAATTGCGACGTCGACTATGGCGGCGAAGTTAGCATTCTTCCCACCAAATCCGCCGTCGTACACGGTGGTGACTGAAGAATCTACGGGGAAGATGATGATTTCTACGAACCTGCCGCATTACCTAAGAGATGAGAACATCGAAGTGGTGAAGATAAGGACAAAAAGAGGGAATGAGATTGTGGCCATGTATGTGAAGAATCCAACCGCTAAACTCACTGTTTTGTTTTCTCATGGCAACGCTTCCGATCTTGCTCAGATTTTCTACATCTTAGCGGAACTAATTCAACTCAATGTCAATCTCATGGGATACGATTATTCAGGATATGGGCAATCTTCTGGTAAGCCAAGCGAGCAAGATACGTACGCAGACATAGAAGCAGCTTACAATTGGCTAAGACAGACCTACGGTACAAAAGATGAACGTATCATTTTGTATGGACAATCCGTTGGAAGTGGACCGTCGCTTGAGCTTGCTTCTCGTCTTCCACGTCTCCGAGCACTTGTTCTCCATAGTCCTTTCTTGTCTGGTCTACGTGTTATGTACCCTGTCAAGCACTCCTTCCCGTTCGACATTTACAAGAATATTGACAAAATTCATCTCGTGGAGTGTCCTGTTCTTGTAATTCATGGAACAGATGACGATGTGGTGAATATTTCACATGGAAAACATTTATGGGGACTATGCAAAGAAAAATACGAACCCTTATGGCTTAAAGGAAGAGGCCATTCTGATATTGAGATGTCTCCTGAGTACTTACCTCACTTAAGAAAGTTCATTTCAGCCATTGAGAAGCTTCCAGTTCCAAAATTTCGACGCCAATCATTGGCTAATGACCACAAGAACGACAAATCAACGAAGAGTAGCTGGATTGGATCTAGACATAGCATAGAATGTGTTCCTCCTAGAGACAAATCAAGAAAGATAAGTATCGATCATCGGTTTGGGAAGCCGAGAAACAGCGTGGGTAGCTCTGATCGGGCTAGGAATAGCTTCGACAGGTTGGGTGAAATGGTGAGATCAGTTCGGTTGTGTAATGTTGATTGTGTGAAGAATGCAGTTGCAGAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

358

Amino Acids

40.4

Weight (kDa)

9.23

Isoelectric Point (pI)

55.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 71 - 177 1.3e-11 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 75 - 190 2.6e-09 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011268)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13610 AT1G13610
fragaria_vesca FvH4_4g29030
malus_domestica MD13G1055400.v1.1 MD16G1054200.v1.1
prunus_persica Prupe.1G295500_v2.0.a1 Prupe.1G295500_v2.0.a1 Prupe.1G295500_v2.0.a1
pyrus_communis pycom13g04900 pycom16g04720
rosa_chinensis RchiOBHm_Chr4g0437131
rosa_laevigata RLG00000006466
rosa_multiflora Rmu_ssc0000006.1_g000003
rosa_roxburghii Rroxscaffold_5G00378200
rosa_rugosa Rorug04G0298200
rosa_samantha Rh4AG353100 Rh4BG362600 Rh4CG376800 Rh4DG356600
rosa_wichuraiana Rw4G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 17
Acc36I ACCTGC 1 cut(s) 123
AccB7I CCANNNNNTGG 1 cut(s) 829
AccI GTMKAC 2 cut(s) 17, 535
AciI CCGC 5 cut(s) 26, 56, 119, 210, 278
AclWI GGATC 1 cut(s) 886
AcoI YGGCCR 1 cut(s) 186
AcsI RAATTY 2 cut(s) 597, 812
AcuI CTGAAG 1 cut(s) 99
AcyI GRCGYC 2 cut(s) 14, 820
AfaI GTAC 5 cut(s) 65, 368, 415, 548, 758
AfiI CCNNNNNNNGG 1 cut(s) 829
AflII CTTAAG 1 cut(s) 769
AflIII ACRYGT 1 cut(s) 538
AgsI TTSAA 1 cut(s) 290
AjiI CACGTC 1 cut(s) 494
AleI CACNNNNGTG 1 cut(s) 71
AluBI AGCT 6 cut(s) 386, 475, 799, 870, 975, 996
AluI AGCT 6 cut(s) 386, 475, 799, 870, 975, 996
Alw21I GWGCWC 1 cut(s) 505
Alw26I GTCTC 3 cut(s) 500, 753, 906
AlwI GGATC 1 cut(s) 886
AoxI GGCC 2 cut(s) 186, 727
ApeKI GCWGC 1 cut(s) 383
ApoI RAATTY 2 cut(s) 597, 812
ArsI GACNNNNNNTTYG 2 cut(s) 44, 76
Asp700I GAANNNNTTC 3 cut(s) 285, 900, 995
AspS9I GGNCC 1 cut(s) 461
AsuHPI GGTGA 5 cut(s) 85, 163, 664, 1022, 1030
AvaII GGWCC 1 cut(s) 461
BalI TGGCCA 1 cut(s) 188
BauI CACGAG 1 cut(s) 605
BbsI GAAGAC 1 cut(s) 479
Bbv12I GWGCWC 1 cut(s) 505
BbvI GCAGC 1 cut(s) 395
BceAI ACGGC 1 cut(s) 43
BciVI GTATCC 1 cut(s) 305
BcoDI GTCTC 3 cut(s) 500, 753, 906
BfaI CTAG 3 cut(s) 882, 909, 987
BfrI CTTAAG 1 cut(s) 769
BfuAI ACCTGC 1 cut(s) 123
BfuI GTATCC 1 cut(s) 305
BisI GCNGC 3 cut(s) 27, 119, 384
BlsI GCNGC 3 cut(s) 28, 120, 385
BmcAI AGTACT 1 cut(s) 758
Bme18I GGWCC 1 cut(s) 461
BmgBI CACGTC 1 cut(s) 494
BmgT120I GGNCC 1 cut(s) 461
BpiI GAAGAC 1 cut(s) 479
BpuEI CTTGAG 1 cut(s) 491
Bsa29I ATCGAT 1 cut(s) 936
BsaAI YACGTR 2 cut(s) 366, 539
BsaBI GATNNNNATC 1 cut(s) 932
BsaHI GRCGYC 2 cut(s) 14, 820
BsaXI ACNNNNNCTCC 2 cut(s) 495, 525
Bsc4I CCNNNNNNNGG 1 cut(s) 829
Bse1I ACTGG 1 cut(s) 803
Bse8I GATNNNNATC 1 cut(s) 932
BseCI ATCGAT 1 cut(s) 936
BseJI GATNNNNATC 1 cut(s) 932
BseLI CCNNNNNNNGG 1 cut(s) 829
BseMII CTCAG 2 cut(s) 272, 744
BseNI ACTGG 1 cut(s) 803
BseXI GCAGC 1 cut(s) 395
BshFI GGCC 2 cut(s) 188, 729
BshVI ATCGAT 1 cut(s) 936
BsiHKAI GWGCWC 1 cut(s) 505
BsiWI CGTACG 1 cut(s) 366
BslFI GGGAC 1 cut(s) 696
BslI CCNNNNNNNGG 1 cut(s) 829
BsmAI GTCTC 3 cut(s) 500, 753, 906
BsmBI CGTCTC 1 cut(s) 500
BsmFI GGGAC 1 cut(s) 696
BsmI GAATGC 2 cut(s) 38, 1063
BsnI GGCC 2 cut(s) 188, 729
Bsp1286I GDGCHC 1 cut(s) 505
Bsp143I GATC 5 cut(s) 250, 878, 937, 979, 1022
BspACI CCGC 5 cut(s) 26, 56, 119, 210, 278
BspANI GGCC 2 cut(s) 188, 729
BspCNI CTCAG 2 cut(s) 271, 745
BspDI ATCGAT 1 cut(s) 936
BspMI ACCTGC 1 cut(s) 123
BspPI GGATC 1 cut(s) 886
BspTI CTTAAG 1 cut(s) 769
BsrI ACTGG 1 cut(s) 803
BssMI GATC 5 cut(s) 250, 878, 937, 979, 1022
BssNI GRCGYC 2 cut(s) 14, 820
BssSI CACGAG 1 cut(s) 605
Bst2BI CACGAG 1 cut(s) 605
Bst4CI ACNGT 4 cut(s) 70, 223, 413, 465
Bst6I CTCTTC 2 cut(s) 718, 857
BstACI GRCGYC 2 cut(s) 14, 820
BstAFI CTTAAG 1 cut(s) 769
BstBAI YACGTR 2 cut(s) 366, 539
BstC8I GCNNGC 2 cut(s) 356, 477
BstDEI CTNAG 5 cut(s) 128, 258, 274, 398, 753
BstKTI GATC 5 cut(s) 253, 881, 940, 982, 1025
BstMAI GTCTC 3 cut(s) 500, 753, 906
BstMBI GATC 5 cut(s) 250, 878, 937, 979, 1022
BstMWI GCNNNNNNNGC 3 cut(s) 35, 355, 972
BstSNI TACGTA 1 cut(s) 366
BstV1I GCAGC 1 cut(s) 395
BstV2I GAAGAC 1 cut(s) 479
BstX2I RGATCY 1 cut(s) 878
BstYI RGATCY 1 cut(s) 878
Bsu15I ATCGAT 1 cut(s) 936
BsuI GTATCC 1 cut(s) 305
BsuRI GGCC 2 cut(s) 188, 729
BsuTUI ATCGAT 1 cut(s) 936
BtrI CACGTC 1 cut(s) 494
BtsIMutI CAGTG 1 cut(s) 219
BveI ACCTGC 1 cut(s) 123
Cac8I GCNNGC 2 cut(s) 356, 477
Cfr13I GGNCC 1 cut(s) 461
ClaI ATCGAT 1 cut(s) 936
CseI GACGC 1 cut(s) 828
Csp6I GTAC 5 cut(s) 64, 367, 414, 547, 757
CviAII CATG 5 cut(s) 190, 236, 307, 632, 665
CviQI GTAC 5 cut(s) 64, 367, 414, 547, 757
DdeI CTNAG 5 cut(s) 128, 258, 274, 398, 753
DpnI GATC 5 cut(s) 252, 880, 939, 981, 1024
DpnII GATC 5 cut(s) 250, 878, 937, 979, 1022
EaeI YGGCCR 1 cut(s) 186
Eam1104I CTCTTC 2 cut(s) 718, 857
EarI CTCTTC 2 cut(s) 718, 857
EciI GGCGGA 1 cut(s) 45
Eco105I TACGTA 1 cut(s) 366
Eco47I GGWCC 1 cut(s) 461
Eco57I CTGAAG 1 cut(s) 99
Esp3I CGTCTC 1 cut(s) 500
FaeI CATG 5 cut(s) 193, 239, 310, 635, 668
FalI AAGNNNNNCTT 2 cut(s) 548, 580
FaqI GGGAC 1 cut(s) 696
FatI CATG 5 cut(s) 189, 235, 306, 631, 664
FblI GTMKAC 2 cut(s) 17, 535
Fnu4HI GCNGC 3 cut(s) 27, 119, 384
Fsp4HI GCNGC 3 cut(s) 27, 119, 384
FspBI CTAG 3 cut(s) 882, 909, 987
GluI GCNGC 3 cut(s) 27, 119, 384
HaeIII GGCC 2 cut(s) 188, 729
HgaI GACGC 1 cut(s) 828
Hin1I GRCGYC 2 cut(s) 14, 820
Hin1II CATG 5 cut(s) 193, 239, 310, 635, 668
HincII GTYRAC 1 cut(s) 18
HindII GTYRAC 1 cut(s) 18
HindIII AAGCTT 1 cut(s) 797
HinfI GANTC 2 cut(s) 83, 202
HphI GGTGA 5 cut(s) 85, 163, 664, 1022, 1030
Hpy166II GTNNAC 4 cut(s) 18, 66, 461, 536
Hpy188I TCNGA 5 cut(s) 250, 261, 500, 736, 979
Hpy188III TCNNGA 4 cut(s) 324, 752, 882, 921
Hpy8I GTNNAC 4 cut(s) 18, 66, 461, 536
Hpy99I CGWCG 5 cut(s) 16, 19, 64, 469, 822
HpyAV CCTTC 1 cut(s) 574
HpyCH4III ACNGT 4 cut(s) 70, 223, 413, 465
HpyCH4IV ACGT 5 cut(s) 14, 365, 427, 493, 538
HpyCH4V TGCA 3 cut(s) 690, 1061, 1067
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 355, 972
HpyF3I CTNAG 5 cut(s) 128, 258, 274, 398, 753
HpySE526I ACGT 5 cut(s) 14, 365, 427, 493, 538
Hsp92I GRCGYC 2 cut(s) 14, 820
Hsp92II CATG 5 cut(s) 193, 239, 310, 635, 668
Kzo9I GATC 5 cut(s) 250, 878, 937, 979, 1022
Lsp1109I GCAGC 1 cut(s) 395
MaeI CTAG 3 cut(s) 882, 909, 987
MaeII ACGT 5 cut(s) 14, 365, 427, 493, 538
MaeIII GTNAC 1 cut(s) 73
MalI GATC 5 cut(s) 252, 880, 939, 981, 1024
MboI GATC 5 cut(s) 250, 878, 937, 979, 1022
MfeI CAATTG 1 cut(s) 391
MflI RGATCY 1 cut(s) 878
MhlI GDGCHC 1 cut(s) 505
MlsI TGGCCA 1 cut(s) 188
MluCI AATT 6 cut(s) 6, 285, 391, 597, 627, 812
MluNI TGGCCA 1 cut(s) 188
MmeI TCCRAC 2 cut(s) 230, 433
MnlI CCTC 5 cut(s) 164, 719, 774, 915, 1063
Mox20I TGGCCA 1 cut(s) 188
MroXI GAANNNNTTC 3 cut(s) 285, 900, 995
MscI TGGCCA 1 cut(s) 188
MseI TTAA 2 cut(s) 717, 770
MslI CAYNNNNRTG 3 cut(s) 71, 146, 194
Msp20I TGGCCA 1 cut(s) 188
MspCI CTTAAG 1 cut(s) 769
MunI CAATTG 1 cut(s) 391
Mva1269I GAATGC 2 cut(s) 38, 1063
MwoI GCNNNNNNNGC 3 cut(s) 35, 355, 972
NdeII GATC 5 cut(s) 250, 878, 937, 979, 1022
NlaIII CATG 5 cut(s) 193, 239, 310, 635, 668
NmeAIII GCCGAG 1 cut(s) 981
NmuCI GTSAC 1 cut(s) 73
OliI CACNNNNGTG 1 cut(s) 71
PcsI WCGNNNNNNNCGW 1 cut(s) 490
PctI GAATGC 2 cut(s) 38, 1063
PdmI GAANNNNTTC 3 cut(s) 285, 900, 995
PfeI GAWTC 2 cut(s) 83, 202
Pfl23II CGTACG 1 cut(s) 366
PflMI CCANNNNNTGG 1 cut(s) 829
PkrI GCNGC 3 cut(s) 28, 120, 385
Ppu21I YACGTR 2 cut(s) 366, 539
PspLI CGTACG 1 cut(s) 366
PspPI GGNCC 1 cut(s) 461
PsuI RGATCY 1 cut(s) 878
RsaI GTAC 5 cut(s) 65, 368, 415, 548, 758
RsaNI GTAC 5 cut(s) 64, 367, 414, 547, 757
RseI CAYNNNNRTG 3 cut(s) 71, 146, 194
SalI GTCGAC 1 cut(s) 16
SaqAI TTAA 2 cut(s) 717, 770
SatI GCNGC 3 cut(s) 27, 119, 384
Sau3AI GATC 5 cut(s) 250, 878, 937, 979, 1022
Sau96I GGNCC 1 cut(s) 461
ScaI AGTACT 1 cut(s) 758
SduI GDGCHC 1 cut(s) 505
SinI GGWCC 1 cut(s) 461
SmiMI CAYNNNNRTG 3 cut(s) 71, 146, 194
SmlI CTYRAG 2 cut(s) 470, 769
SmoI CTYRAG 2 cut(s) 470, 769
SnaBI TACGTA 1 cut(s) 366
Sse9I AATT 6 cut(s) 6, 285, 391, 597, 627, 812
SsiI CCGC 5 cut(s) 26, 56, 119, 210, 278
SspI AATATT 2 cut(s) 589, 658
SspMI CTAG 3 cut(s) 882, 909, 987
TaaI ACNGT 4 cut(s) 70, 223, 413, 465
TaiI ACGT 5 cut(s) 17, 368, 430, 496, 541
TaqI TCGA 6 cut(s) 17, 144, 573, 817, 936, 999
TasI AATT 6 cut(s) 6, 285, 391, 597, 627, 812
TatI WGTACW 1 cut(s) 756
TauI GCSGC 2 cut(s) 29, 121
TfiI GAWTC 2 cut(s) 83, 202
Tru1I TTAA 2 cut(s) 717, 770
Tru9I TTAA 2 cut(s) 717, 770
TscAI CASTG 1 cut(s) 226
TseFI GTSAC 1 cut(s) 73
TseI GCWGC 1 cut(s) 383
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 4 cut(s) 438, 590, 620, 769
TspGWI ACGGA 1 cut(s) 439
TspRI CASTG 1 cut(s) 226
Van91I CCANNNNNTGG 1 cut(s) 829
Vha464I CTTAAG 1 cut(s) 769
VpaK11BI GGWCC 1 cut(s) 461
XapI RAATTY 2 cut(s) 597, 812
XbaI TCTAGA 1 cut(s) 881
XmiI GTMKAC 2 cut(s) 17, 535
XmnI GAANNNNTTC 3 cut(s) 285, 900, 995
XspI CTAG 3 cut(s) 882, 909, 987
ZraI GACGTC 1 cut(s) 15
ZrmI AGTACT 1 cut(s) 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.