Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003559

Physical Location & Seq

Genomic Coordinates Reverse (-)

4843184 .. 4845913

Gene Structure 2730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G14170.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGGCTAGTACTCTGAGGAACATTCATGATCAAAATGTTATTGCTTCAGAAGACACTGTATACCGCTACTTGTGTCCCGTGAAAAAGACCGGGAGCATTATCGGGAAAGGCGGCGAGATTGCTAAGCAGATAAGGTCTGAGACTAAATCAAACATGAGGATAAACGAGGCTTTACCTGGTTGTGAGGAGCGTGTTGTTACCATGTATTCCACTAATGAGGAGTTGAATCATTTTGGAGATGATGGTGAGCTTGTTTGTCCTGCTTTGGATGCTCTTTTCAAGGTTCATGACATGGTTGTAGCGGACGCTGATCAAGATGATGGTACTGATGATGATAATGATCTTGGTGAAAAGCAAACGGTAACCGTGAGGATGCTTGTACCGTCTGACCAAATTGGTTGCGTTATTGGGAAAGGAGGTCAAGTAATCCAGAATCTTCGTAACGACACCAATGCTCAGATTCGTGTTATCAAAGATCATCTTCCTGCTTGTGCTTTGACTTTGAGTCATGATGAGCTTCTTCTGATAATTGGAGAGCCTTTGGTTGTTAGAGAAGCTCTTTATCAAGTTGCTTCACTGCTTCATGATAATCCTTCAAGATTTCAACACTTACTCCTGTCTTCTTCAAGTTCTTCCATGCATCAACCTGGTGCAATGTTAATGTCTGCAGCACTGACGAGCTCTCACAGAAACTACGCTGTGCGTAGAGATATAGCAGATGCAAGAGAATTTTGTGTTTGCTTCATCTGTCCAGCTGAAAACGTTGGAGGTGTGATTGGAAAAGGCGGTGGTTTCATTAATCAGATCAGGCAAGAAACTGGTGCTACTATTAGAGTCAATACCTCAGAAACTGATGATGATGATTGCATCATTTTCATATCATCAAAAGAGTTCTACGAAGATCAATCTCCAGCGGTGAATGCAGCAATACGCTTACAACAGCGATGCAGTGAGAAAGTTGGTAAAGATGCAAATGATTTAGCAATCTCTACGCGTTTACTTGTATCGAGTTCCCAAATCGGGTGTCTCATTGGAAAAGGTGGAGCAGTTATATCTGAGATGAGGAGTGTAACAAGAGCTAATATTCGTATTCTTCAAAAAGAAGATGTACCAAAAATTGCTCGTGAAGATGAAGAGATGGTTCAGATTACAGGAAGTCCTGATGCCGCTATGAAAGCTCTCACGCAAGTAATCTTGCGATTAAGAGCTAACTCTTTCGACATGGATCATGGACTTGTCTTGCTACCAACATCTTTTCCATATATCCCTCAAGTGACTGAAAGTTCGAGCAAATCCAAATACGCAAAACGCGATGACCACAGTAAACTGAATTCGAATTCTAAGAGAAGAAACCATGTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

454

Amino Acids

49.77

Weight (kDa)

5.61

Isoelectric Point (pI)

46.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	46 - 99	1.5e-09	KH domain
KH_1	PF00013	147 - 215	1.4e-15	KH domain
KH_1	PF00013	273 - 320	7.1e-12	KH domain
KH_1	PF00013	356 - 422	6.9e-15	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14170 AT1G14170 AT1G14170 AT2G03110 AT2G03110 AT2G03110 AT5G15270 AT5G15270 AT5G15270
fragaria_vesca	FvH4_6g48190 FvH4_6g48190 FvH4_6g48190 FvH4_6g48190 FvH4_6g48190 FvH4_6g48190 FvH4_6g48190
malus_domestica	MD00G1125600.v1.1 MD09G1053100.v1.1
prunus_persica	Prupe.3G265600_v2.0.a1
pyrus_communis	pycom111g04440 pycom17g04850
rosa_chinensis	RchiOBHm_Chr2g0167651
rosa_laevigata	RLG00000021744
rosa_multiflora	Rmu_co8465399.1_g000001 Rmu_sc0001970.1_g000014
rosa_roxburghii	Rroxscaffold_2G00083350
rosa_rugosa	Rorug02G0530800 Rorug02G0530800 Rorug02G0530900 Rorug02G0531000
rosa_samantha	Rh2AG600000 Rh2BG610500 Rh2CG580900 Rh2DG623200
rosa_wichuraiana	Rw2G049810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	60
AccII	CGCG	2 cut(s)	994, 1311
AciI	CCGC	6 cut(s)	64, 111, 302, 786, 914, 1167
AclI	AACGTT	1 cut(s)	762
AclWI	GGATC	1 cut(s)	1233
AcsI	RAATTY	3 cut(s)	728, 1330, 1336
AcuI	CTGAAG	1 cut(s)	30
AfaI	GTAC	4 cut(s)	10, 325, 381, 1110
AfiI	CCNNNNNNNGG	1 cut(s)	1020
AflIII	ACRYGT	1 cut(s)	992
AgsI	TTSAA	6 cut(s)	226, 280, 597, 605, 627, 1097
AhdI	GACNNNNNGTC	1 cut(s)	504
AjnI	CCWGG	2 cut(s)	175, 646
AluBI	AGCT	8 cut(s)	250, 517, 557, 681, 755, 1079, 1178, 1208
AluI	AGCT	8 cut(s)	250, 517, 557, 681, 755, 1079, 1178, 1208
Alw21I	GWGCWC	1 cut(s)	683
Alw26I	GTCTC	2 cut(s)	134, 1031
AlwI	GGATC	1 cut(s)	1233
AlwNI	CAGNNNCTG	1 cut(s)	851
ApeKI	GCWGC	2 cut(s)	668, 923
ApoI	RAATTY	3 cut(s)	728, 1330, 1336
ArsI	GACNNNNNNTTYG	4 cut(s)	1009, 1041, 1267, 1299
AseI	ATTAAT	1 cut(s)	798
AsuC2I	CCSGG	1 cut(s)	91
AsuHPI	GGTGA	3 cut(s)	257, 359, 928
AsuII	TTCGAA	1 cut(s)	1334
BanII	GRGCYC	1 cut(s)	683
BauI	CACGAG	1 cut(s)	1122
BbsI	GAAGAC	2 cut(s)	57, 612
Bbv12I	GWGCWC	1 cut(s)	683
BbvI	GCAGC	2 cut(s)	680, 935
BccI	CCATC	3 cut(s)	236, 314, 1132
BcgI	CGANNNNNNTGC	2 cut(s)	434, 468
BciT130I	CCWGG	2 cut(s)	177, 648
BclI	TGATCA	2 cut(s)	28, 310
BcnI	CCSGG	1 cut(s)	91
BcoDI	GTCTC	2 cut(s)	134, 1031
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	666
BisI	GCNGC	4 cut(s)	112, 669, 924, 1167
BlpI	GCTNAGC	1 cut(s)	123
BlsI	GCNGC	4 cut(s)	113, 670, 925, 1168
BmcAI	AGTACT	1 cut(s)	10
Bme1390I	CCNGG	3 cut(s)	91, 177, 648
BmeRI	GACNNNNNGTC	1 cut(s)	504
BmrFI	CCNGG	3 cut(s)	91, 177, 648
BmsI	GCATC	8 cut(s)	259, 363, 649, 709, 876, 935, 958, 1153
BpiI	GAAGAC	2 cut(s)	57, 612
BpmI	CTGGAG	1 cut(s)	894
Bpu1102I	GCTNAGC	1 cut(s)	123
Bpu14I	TTCGAA	1 cut(s)	1334
BpuEI	CTTGAG	1 cut(s)	1254
BpuMI	CCSGG	1 cut(s)	91
BsaBI	GATNNNNATC	1 cut(s)	339
BsaXI	ACNNNNNCTCC	4 cut(s)	408, 438, 597, 627
Bsc4I	CCNNNNNNNGG	1 cut(s)	1020
Bse1I	ACTGG	1 cut(s)	823
Bse3DI	GCAATG	1 cut(s)	660
Bse8I	GATNNNNATC	1 cut(s)	339
BseBI	CCWGG	2 cut(s)	177, 648
BseGI	GGATG	2 cut(s)	274, 378
BseJI	GATNNNNATC	1 cut(s)	339
BseLI	CCNNNNNNNGG	1 cut(s)	1020
BseMI	GCAATG	1 cut(s)	660
BseMII	CTCAG	5 cut(s)	5, 129, 470, 858, 1047
BseNI	ACTGG	1 cut(s)	823
BseRI	GAGGAG	3 cut(s)	200, 233, 1078
BseXI	GCAGC	2 cut(s)	680, 935
Bsh1236I	CGCG	2 cut(s)	994, 1311
BsiHKAI	GWGCWC	1 cut(s)	683
BsiSI	CCGG	1 cut(s)	90
BslFI	GGGAC	1 cut(s)	60
BslI	CCNNNNNNNGG	1 cut(s)	1020
BsmAI	GTCTC	2 cut(s)	134, 1031
BsmFI	GGGAC	1 cut(s)	60
BsmI	GAATGC	1 cut(s)	925
Bsp119I	TTCGAA	1 cut(s)	1334
Bsp1286I	GDGCHC	1 cut(s)	683
Bsp143I	GATC	7 cut(s)	28, 310, 340, 475, 804, 901, 1225
Bsp1720I	GCTNAGC	1 cut(s)	123
BspACI	CCGC	6 cut(s)	64, 111, 302, 786, 914, 1167
BspCNI	CTCAG	5 cut(s)	6, 130, 469, 857, 1048
BspFNI	CGCG	2 cut(s)	994, 1311
BspHI	TCATGA	4 cut(s)	25, 286, 508, 583
BspMAI	CTGCAG	1 cut(s)	670
BspPI	GGATC	1 cut(s)	1233
BspT104I	TTCGAA	1 cut(s)	1334
BsrDI	GCAATG	1 cut(s)	660
BsrI	ACTGG	1 cut(s)	823
BssMI	GATC	7 cut(s)	28, 310, 340, 475, 804, 901, 1225
BssNAI	GTATAC	1 cut(s)	61
BssSI	CACGAG	1 cut(s)	1122
Bst1107I	GTATAC	1 cut(s)	61
Bst2BI	CACGAG	1 cut(s)	1122
Bst2UI	CCWGG	2 cut(s)	177, 648
Bst4CI	ACNGT	5 cut(s)	58, 361, 367, 384, 1322
Bst6I	CTCTTC	1 cut(s)	1128
BstBI	TTCGAA	1 cut(s)	1334
BstDEI	CTNAG	7 cut(s)	14, 123, 138, 456, 844, 1056, 1341
BstEII	GGTNACC	1 cut(s)	361
BstF5I	GGATG	2 cut(s)	274, 378
BstFNI	CGCG	2 cut(s)	994, 1311
BstKTI	GATC	7 cut(s)	31, 313, 343, 478, 807, 904, 1228
BstMAI	GTCTC	2 cut(s)	134, 1031
BstMBI	GATC	7 cut(s)	28, 310, 340, 475, 804, 901, 1225
BstMWI	GCNNNNNNNGC	3 cut(s)	269, 920, 1175
BstNI	CCWGG	2 cut(s)	177, 648
BstPI	GGTNACC	1 cut(s)	361
BstSCI	CCNGG	3 cut(s)	89, 175, 646
BstSFI	CTRYAG	1 cut(s)	666
BstUI	CGCG	2 cut(s)	994, 1311
BstV1I	GCAGC	2 cut(s)	680, 935
BstV2I	GAAGAC	2 cut(s)	57, 612
BstZ17I	GTATAC	1 cut(s)	61
BtgZI	GCGATG	2 cut(s)	958, 1326
BtsCI	GGATG	2 cut(s)	274, 378
BtsI	GCAGTG	2 cut(s)	575, 955
BtsIMutI	CAGTG	4 cut(s)	54, 575, 671, 955
CaiI	CAGNNNCTG	1 cut(s)	851
CciI	TCATGA	4 cut(s)	25, 286, 508, 583
CseI	GACGC	1 cut(s)	314
CsiI	ACCWGGT	2 cut(s)	175, 646
Csp6I	GTAC	4 cut(s)	9, 324, 380, 1109
CviQI	GTAC	4 cut(s)	9, 324, 380, 1109
DdeI	CTNAG	7 cut(s)	14, 123, 138, 456, 844, 1056, 1341
DpnI	GATC	7 cut(s)	30, 312, 342, 477, 806, 903, 1227
DpnII	GATC	7 cut(s)	28, 310, 340, 475, 804, 901, 1225
DriI	GACNNNNNGTC	1 cut(s)	504
Eam1104I	CTCTTC	1 cut(s)	1128
Eam1105I	GACNNNNNGTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	1128
Ecl136II	GAGCTC	1 cut(s)	681
Eco24I	GRGCYC	1 cut(s)	683
Eco53kI	GAGCTC	1 cut(s)	681
Eco57I	CTGAAG	1 cut(s)	30
Eco91I	GGTNACC	1 cut(s)	361
EcoICRI	GAGCTC	1 cut(s)	681
EcoO65I	GGTNACC	1 cut(s)	361
EcoRI	GAATTC	2 cut(s)	1330, 1336
EcoRII	CCWGG	2 cut(s)	175, 646
EcoT22I	ATGCAT	1 cut(s)	642
EcoT38I	GRGCYC	1 cut(s)	683
FalI	AAGNNNNNCTT	2 cut(s)	465, 497
FaqI	GGGAC	1 cut(s)	60
FbaI	TGATCA	2 cut(s)	28, 310
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	4 cut(s)	112, 669, 924, 1167
FokI	GGATG	2 cut(s)	281, 385
FriOI	GRGCYC	1 cut(s)	683
Fsp4HI	GCNGC	4 cut(s)	112, 669, 924, 1167
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	4 cut(s)	112, 669, 924, 1167
GsuI	CTGGAG	1 cut(s)	894
HapII	CCGG	1 cut(s)	90
HgaI	GACGC	1 cut(s)	314
HinfI	GANTC	5 cut(s)	226, 433, 460, 505, 834
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	3 cut(s)	257, 359, 928
Hpy166II	GTNNAC	3 cut(s)	61, 998, 1325
Hpy8I	GTNNAC	3 cut(s)	61, 998, 1325
HpyAV	CCTTC	1 cut(s)	603
HpyCH4III	ACNGT	5 cut(s)	58, 361, 367, 384, 1322
HpyCH4IV	ACGT	1 cut(s)	762
HpyCH4V	TGCA	8 cut(s)	640, 653, 668, 722, 867, 923, 948, 971
HpyF10VI	GCNNNNNNNGC	3 cut(s)	269, 920, 1175
HpyF3I	CTNAG	7 cut(s)	14, 123, 138, 456, 844, 1056, 1341
HpySE526I	ACGT	1 cut(s)	762
Ksp22I	TGATCA	2 cut(s)	28, 310
Kzo9I	GATC	7 cut(s)	28, 310, 340, 475, 804, 901, 1225
LmnI	GCTCC	3 cut(s)	93, 187, 1043
Lsp1109I	GCAGC	2 cut(s)	680, 935
LweI	GCATC	8 cut(s)	259, 363, 649, 709, 876, 935, 958, 1153
MabI	ACCWGGT	2 cut(s)	175, 646
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	1 cut(s)	762
MaeIII	GTNAC	5 cut(s)	196, 361, 440, 1069, 1273
MalI	GATC	7 cut(s)	30, 312, 342, 477, 806, 903, 1227
MboI	GATC	7 cut(s)	28, 310, 340, 475, 804, 901, 1225
MhlI	GDGCHC	1 cut(s)	683
MluCI	AATT	6 cut(s)	393, 528, 728, 1116, 1330, 1336
MluI	ACGCGT	1 cut(s)	992
MlyI	GAGTC	2 cut(s)	514, 843
MmeI	TCCRAC	1 cut(s)	745
Mph1103I	ATGCAT	1 cut(s)	642
MseI	TTAA	4 cut(s)	659, 798, 1202, 1363
MspA1I	CMGCKG	2 cut(s)	755, 914
MspI	CCGG	1 cut(s)	90
MspR9I	CCNGG	3 cut(s)	91, 177, 648
Mva1269I	GAATGC	1 cut(s)	925
MvaI	CCWGG	2 cut(s)	177, 648
MvnI	CGCG	2 cut(s)	994, 1311
MwoI	GCNNNNNNNGC	3 cut(s)	269, 920, 1175
NciI	CCSGG	1 cut(s)	91
NdeII	GATC	7 cut(s)	28, 310, 340, 475, 804, 901, 1225
NmuCI	GTSAC	1 cut(s)	1273
NsiI	ATGCAT	1 cut(s)	642
NspV	TTCGAA	1 cut(s)	1334
PagI	TCATGA	4 cut(s)	25, 286, 508, 583
PcsI	WCGNNNNNNNCGW	1 cut(s)	1308
PctI	GAATGC	1 cut(s)	925
PfeI	GAWTC	3 cut(s)	226, 433, 460
PkrI	GCNGC	4 cut(s)	113, 670, 925, 1168
PleI	GAGTC	2 cut(s)	513, 842
PpsI	GAGTC	2 cut(s)	513, 842
PshBI	ATTAAT	1 cut(s)	798
Psp124BI	GAGCTC	1 cut(s)	683
Psp1406I	AACGTT	1 cut(s)	762
Psp6I	CCWGG	2 cut(s)	175, 646
PspEI	GGTNACC	1 cut(s)	361
PspGI	CCWGG	2 cut(s)	175, 646
PstI	CTGCAG	1 cut(s)	670
PstNI	CAGNNNCTG	1 cut(s)	851
PvuII	CAGCTG	1 cut(s)	755
RsaI	GTAC	4 cut(s)	10, 325, 381, 1110
RsaNI	GTAC	4 cut(s)	9, 324, 380, 1109
SacI	GAGCTC	1 cut(s)	683
SaqAI	TTAA	4 cut(s)	659, 798, 1202, 1363
SatI	GCNGC	4 cut(s)	112, 669, 924, 1167
Sau3AI	GATC	7 cut(s)	28, 310, 340, 475, 804, 901, 1225
ScaI	AGTACT	1 cut(s)	10
SchI	GAGTC	2 cut(s)	514, 843
ScrFI	CCNGG	3 cut(s)	91, 177, 648
SduI	GDGCHC	1 cut(s)	683
SexAI	ACCWGGT	2 cut(s)	175, 646
SfaNI	GCATC	8 cut(s)	259, 363, 649, 709, 876, 935, 958, 1153
SfcI	CTRYAG	1 cut(s)	666
SfuI	TTCGAA	1 cut(s)	1334
SmlI	CTYRAG	1 cut(s)	1269
SmoI	CTYRAG	1 cut(s)	1269
Sse9I	AATT	6 cut(s)	393, 528, 728, 1116, 1330, 1336
SsiI	CCGC	6 cut(s)	64, 111, 302, 786, 914, 1167
SspI	AATATT	1 cut(s)	1084
SspMI	CTAG	1 cut(s)	6
SstI	GAGCTC	1 cut(s)	683
StyD4I	CCNGG	3 cut(s)	89, 175, 646
TaaI	ACNGT	5 cut(s)	58, 361, 367, 384, 1322
TaiI	ACGT	1 cut(s)	765
TaqI	TCGA	4 cut(s)	1007, 1218, 1286, 1334
TasI	AATT	6 cut(s)	393, 528, 728, 1116, 1330, 1336
TatI	WGTACW	1 cut(s)	8
TauI	GCSGC	2 cut(s)	114, 1169
TfiI	GAWTC	3 cut(s)	226, 433, 460
Tru1I	TTAA	4 cut(s)	659, 798, 1202, 1363
Tru9I	TTAA	4 cut(s)	659, 798, 1202, 1363
TscAI	CASTG	4 cut(s)	61, 582, 678, 955
TseFI	GTSAC	1 cut(s)	1273
TseI	GCWGC	2 cut(s)	668, 923
Tsp45I	GTSAC	1 cut(s)	1273
TspDTI	ATGAA	8 cut(s)	14, 275, 572, 733, 784, 865, 1146, 1187
TspRI	CASTG	4 cut(s)	61, 582, 678, 955
VspI	ATTAAT	1 cut(s)	798
XapI	RAATTY	3 cut(s)	728, 1330, 1336
XmiI	GTMKAC	1 cut(s)	60
XspI	CTAG	1 cut(s)	6
ZrmI	AGTACT	1 cut(s)	10
Zsp2I	ATGCAT	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.