Prupe.3G265600_v2.0.a1

KH domain-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
24918998 .. 24922478
3481 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G265600.1

Sequence Viewer

Length: 1656 bp
ATGGCAGGTCAGAGGAACAGTTATGGAAAGCGCTCGCATTCTCAGTCGGATTACGCCGATAACGGAGGGGGAGGAAACAAAAGGAGAAATCCAGGTGAAGAAAGAGAGCAATTCATCATCGATGCGGAGGACACCGTGTATCGGTACTTGTGCCCGGTGAAGAAGATTGGTAGCATAATCGGGAGAGGAGGAGAGATTGTCAAGCAGCTGAGGGTGGACACAAAGTCCAAGATTAGAATCGGCGAAACGGTGCCGGGTTGCGAGGAGCGAGTTGTTACTGTGTACAGCGCCAGCGACGAGACGAATGGGTTTGAAGATGGTGGTGCTTATGTTGCTCCTGCGCAGGACGCGTTGTTCAGGGTCCATGAGAGGGTCATAGCTGAGGACCTGCATAACGATGAGGACGCGGACGGTGGAAGCCACCATGTTATTGCTCGGCTTCTTGTGCCGTCTGATCAGATTGGTTGCATTATTGGCAAAGGTGGGCAGATAGTTCAGAACATTCGTAGTGAAACGGGTGCCCAGATTCGCATTCTTAAGGACGACCATTTGCCTGCTTGTGCCTTGAACTCGGACGAGCTTGTACAGATATCTGGGGAGGCTCCTCTTGTTAAGAAGGCTCTTTTTCAAATAGCATCTCGCCTTCATGATAACCCGTCACGATCTCAGCATTTGCTTACATCTGCGGTGCCTATGTACACTTCTGGTGGTTCGCTCATGGGTCCATCTGGTGGTCCACCAATAGTGGGAATAGCTCCATTGATGGGTCCTTATGGAGGGTATAAAGGTGATGTTGGAGACTGGTCACGCTCCTTGTACTCAGCTCCAAGAGATGATGCTTCTTCAAAAGAATTTTCTATTCGCTTGGTTTGTCCAACTGCTAATATTGGAGGTGTGATTGGGAAGGGTGGTGTCATAATTAATCAAATCAGACAGGATTCTGGGGCTGTCATTAAAGTTGATAGTTCAACATCTGAAGGAGATGATTGCTTAATTACTGTATCAGCAAAGGAGTTCTTTGAAGACCCATACTCGGCAACTGTAGAAGCAGCAGTGCGTTTGCAACCCAGATGCAGCGAGAAAGTAGAAAGAGATTCAGGAATTATCTCATTCACAACCCGCCTTCTTGTTCCAACATCACGAATTGGCTGCTTAATTGGTAAAGGAGGAGCGATTGTAACTGAGATGAGGAGAATTACCAAAGCTAATATTCGCATACTTTCTAAGGAAAGTCTGCCCAAAATCGCATCTGAAGATGATGAGATGGTGCAGATTTCTGGAGATCTTGATATTGCTAAGGACGCTCTTATACAAGTAGTTACCCGATTAAGAGCAAACCTTTTTGACAGGGAAGGTGCAGGGTCTGCGTTCCTGCCAGTTTTGCCTTATCTTCCTGTGTCAGCAGATGGTTCAGATGGTCCAAATTATGATAGTAGAGATGGTAAAAGACATGGGCGTGGGCATTCTTACTCTGCCGGCTATGGTGGCTCAAGTGATTTTGCAACAAATGATAGTTATGGAAGTTATGGTGGTTCACAGATTGGTGGTAGCGGCAGCGCTTATGGAGCCTATGGAGCTTATTCTTCCGGACGGAGTGGTAGTTCTGGGTTATCTAGCCAGAACCCTGTTTCTCGGAGGAGAAACTATGGTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

552

Amino Acids

58.65

Weight (kDa)

6.12

Isoelectric Point (pI)

44.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 342
Acc36I ACCTGC 1 cut(s) 396
AccB1I GGYRCC 3 cut(s) 250, 518, 688
AccB7I CCANNNNNTGG 1 cut(s) 731
AccII CGCG 2 cut(s) 350, 407
AccIII TCCGGA 1 cut(s) 1586
AciI CCGC 5 cut(s) 125, 407, 686, 1120, 1551
AcsI RAATTY 1 cut(s) 851
AcuI CTGAAG 2 cut(s) 996, 1272
AfaI GTAC 5 cut(s) 146, 284, 585, 698, 818
AfeI AGCGCT 2 cut(s) 32, 1558
AfiI CCNNNNNNNGG 7 cut(s) 141, 370, 731, 746, 764, 776, 1033
AflII CTTAAG 1 cut(s) 536
AflIII ACRYGT 1 cut(s) 348
AgsI TTSAA 6 cut(s) 314, 568, 629, 846, 969, 1022
AhdI GACNNNNNGTC 1 cut(s) 223
AjnI CCWGG 1 cut(s) 91
AloI GAACNNNNNNTCC 4 cut(s) 338, 370, 1585, 1617
AluBI AGCT 7 cut(s) 208, 380, 580, 755, 824, 1205, 1577
AluI AGCT 7 cut(s) 208, 380, 580, 755, 824, 1205, 1577
Alw26I GTCTC 2 cut(s) 293, 792
AlwNI CAGNNNCTG 1 cut(s) 1364
Aor13HI TCCGGA 1 cut(s) 1586
Aor51HI AGCGCT 2 cut(s) 32, 1558
ApeKI GCWGC 5 cut(s) 205, 1049, 1074, 1149, 1554
ApoI RAATTY 1 cut(s) 851
AseI ATTAAT 1 cut(s) 921
AspLEI GCGC 4 cut(s) 33, 290, 343, 1559
AspS9I GGNCC 6 cut(s) 361, 385, 722, 734, 767, 1418
AsuC2I CCSGG 2 cut(s) 155, 255
AsuHPI GGTGA 3 cut(s) 107, 169, 800
AvaII GGWCC 6 cut(s) 361, 385, 722, 734, 767, 1418
BaeGI GKGCMC 2 cut(s) 155, 523
BanI GGYRCC 3 cut(s) 250, 518, 688
BbsI GAAGAC 1 cut(s) 1029
BbvCI CCTCAGC 2 cut(s) 209, 381
BbvI GCAGC 5 cut(s) 217, 1061, 1086, 1136, 1566
BccI CCATC 7 cut(s) 311, 733, 757, 1258, 1400, 1409, 1433
BceAI ACGGC 1 cut(s) 433
BcgI CGANNNNNNTGC 2 cut(s) 1131, 1165
BciT130I CCWGG 1 cut(s) 93
BclI TGATCA 1 cut(s) 454
BcnI CCSGG 2 cut(s) 155, 255
BcoDI GTCTC 2 cut(s) 293, 792
BfaI CTAG 1 cut(s) 1614
BfmI CTRYAG 1 cut(s) 1041
BfoI RGCGCY 3 cut(s) 34, 291, 1560
BfrI CTTAAG 1 cut(s) 536
BfuAI ACCTGC 1 cut(s) 396
BglII AGATCT 1 cut(s) 1282
BisI GCNGC 6 cut(s) 206, 1050, 1075, 1150, 1552, 1555
BlsI GCNGC 6 cut(s) 207, 1051, 1076, 1151, 1553, 1556
Bme1390I CCNGG 3 cut(s) 93, 155, 255
Bme18I GGWCC 6 cut(s) 361, 385, 722, 734, 767, 1418
BmeRI GACNNNNNGTC 1 cut(s) 223
BmgT120I GGNCC 6 cut(s) 361, 385, 722, 734, 767, 1418
BmiI GGNNCC 8 cut(s) 252, 362, 520, 603, 690, 723, 768, 1567
BmrFI CCNGG 3 cut(s) 93, 155, 255
BmsI GCATC 5 cut(s) 112, 644, 826, 1061, 1256
BpiI GAAGAC 1 cut(s) 1029
BpmI CTGGAG 1 cut(s) 1299
Bpu10I CCTNAGC 3 cut(s) 209, 381, 1296
BpuEI CTTGAG 1 cut(s) 1474
BpuMI CCSGG 2 cut(s) 155, 255
Bsa29I ATCGAT 1 cut(s) 120
BsaBI GATNNNNATC 1 cut(s) 236
BsaWI WCCGGW 1 cut(s) 1586
BsaXI ACNNNNNCTCC 6 cut(s) 183, 213, 1161, 1191, 1585, 1615
Bsc4I CCNNNNNNNGG 7 cut(s) 141, 370, 731, 746, 764, 776, 1033
Bse118I RCCGGY 1 cut(s) 1475
Bse1I ACTGG 2 cut(s) 806, 1376
Bse8I GATNNNNATC 1 cut(s) 236
BseAI TCCGGA 1 cut(s) 1586
BseBI CCWGG 1 cut(s) 93
BseCI ATCGAT 1 cut(s) 120
BseJI GATNNNNATC 1 cut(s) 236
BseLI CCNNNNNNNGG 7 cut(s) 141, 370, 731, 746, 764, 776, 1033
BseMII CTCAG 6 cut(s) 56, 200, 372, 680, 834, 1173
BseNI ACTGG 2 cut(s) 806, 1376
BseRI GAGGAG 7 cut(s) 201, 204, 278, 594, 1182, 1204, 1651
BseSI GKGCMC 2 cut(s) 155, 523
BseXI GCAGC 5 cut(s) 217, 1061, 1086, 1136, 1566
BsgI GTGCAG 2 cut(s) 1289, 1377
Bsh1236I CGCG 2 cut(s) 350, 407
BshNI GGYRCC 3 cut(s) 250, 518, 688
BshVI ATCGAT 1 cut(s) 120
BsiSI CCGG 4 cut(s) 155, 254, 1476, 1587
BslI CCNNNNNNNGG 7 cut(s) 141, 370, 731, 746, 764, 776, 1033
BsmAI GTCTC 2 cut(s) 293, 792
BsmBI CGTCTC 1 cut(s) 293
BsmI GAATGC 3 cut(s) 37, 531, 1462
Bsp1286I GDGCHC 2 cut(s) 155, 523
Bsp13I TCCGGA 1 cut(s) 1586
Bsp1407I TGTACA 3 cut(s) 282, 583, 696
Bsp143I GATC 3 cut(s) 454, 662, 1282
BspACI CCGC 5 cut(s) 125, 407, 686, 1120, 1551
BspCNI CTCAG 6 cut(s) 55, 201, 373, 679, 833, 1174
BspDI ATCGAT 1 cut(s) 120
BspEI TCCGGA 1 cut(s) 1586
BspFNI CGCG 2 cut(s) 350, 407
BspHI TCATGA 1 cut(s) 646
BspLI GGNNCC 8 cut(s) 252, 362, 520, 603, 690, 723, 768, 1567
BspMI ACCTGC 1 cut(s) 396
BspT107I GGYRCC 3 cut(s) 250, 518, 688
BspTI CTTAAG 1 cut(s) 536
BsrFI RCCGGY 1 cut(s) 1475
BsrGI TGTACA 3 cut(s) 282, 583, 696
BsrI ACTGG 2 cut(s) 806, 1376
BssAI RCCGGY 1 cut(s) 1475
BssMI GATC 3 cut(s) 454, 662, 1282
Bst2UI CCWGG 1 cut(s) 93
Bst4CI ACNGT 7 cut(s) 20, 136, 250, 280, 413, 1000, 1042
BstAFI CTTAAG 1 cut(s) 536
BstAPI GCANNNNNTGC 1 cut(s) 1364
BstAUI TGTACA 3 cut(s) 282, 583, 696
BstC8I GCNNGC 4 cut(s) 35, 292, 555, 1477
BstDEI CTNAG 8 cut(s) 42, 209, 381, 666, 820, 1182, 1224, 1296
BstENI CCTNNNNNAGG 1 cut(s) 774
BstFNI CGCG 2 cut(s) 350, 407
BstH2I RGCGCY 3 cut(s) 34, 291, 1560
BstHHI GCGC 4 cut(s) 33, 290, 343, 1559
BstKTI GATC 3 cut(s) 457, 665, 1285
BstMAI GTCTC 2 cut(s) 293, 792
BstMBI GATC 3 cut(s) 454, 662, 1282
BstNI CCWGG 1 cut(s) 93
BstSCI CCNGG 3 cut(s) 91, 153, 253
BstSFI CTRYAG 1 cut(s) 1041
BstSLI GKGCMC 2 cut(s) 155, 523
BstUI CGCG 2 cut(s) 350, 407
BstV1I GCAGC 5 cut(s) 217, 1061, 1086, 1136, 1566
BstV2I GAAGAC 1 cut(s) 1029
BstX2I RGATCY 1 cut(s) 1282
BstYI RGATCY 1 cut(s) 1282
Bsu15I ATCGAT 1 cut(s) 120
BsuTUI ATCGAT 1 cut(s) 120
BtsI GCAGTG 1 cut(s) 1059
BtsIMutI CAGTG 1 cut(s) 1059
BveI ACCTGC 1 cut(s) 396
Cac8I GCNNGC 4 cut(s) 35, 292, 555, 1477
CaiI CAGNNNCTG 1 cut(s) 1364
CciI TCATGA 1 cut(s) 646
CfoI GCGC 4 cut(s) 33, 290, 343, 1559
Cfr10I RCCGGY 1 cut(s) 1475
Cfr13I GGNCC 6 cut(s) 361, 385, 722, 734, 767, 1418
ClaI ATCGAT 1 cut(s) 120
CseI GACGC 3 cut(s) 356, 413, 1310
Csp6I GTAC 5 cut(s) 145, 283, 584, 697, 817
CviAII CATG 5 cut(s) 365, 425, 647, 718, 1451
CviQI GTAC 5 cut(s) 145, 283, 584, 697, 817
DdeI CTNAG 8 cut(s) 42, 209, 381, 666, 820, 1182, 1224, 1296
DpnI GATC 3 cut(s) 456, 664, 1284
DpnII GATC 3 cut(s) 454, 662, 1282
DriI GACNNNNNGTC 1 cut(s) 223
Eam1105I GACNNNNNGTC 1 cut(s) 223
Eco32I GATATC 1 cut(s) 591
Eco47I GGWCC 6 cut(s) 361, 385, 722, 734, 767, 1418
Eco47III AGCGCT 2 cut(s) 32, 1558
Eco57I CTGAAG 2 cut(s) 996, 1272
EcoNI CCTNNNNNAGG 1 cut(s) 774
EcoO109I RGGNCCY 2 cut(s) 385, 767
EcoRII CCWGG 1 cut(s) 91
EcoRV GATATC 1 cut(s) 591
Esp3I CGTCTC 1 cut(s) 293
FaeI CATG 5 cut(s) 368, 428, 650, 721, 1454
FalI AAGNNNNNCTT 2 cut(s) 1001, 1033
FatI CATG 5 cut(s) 364, 424, 646, 717, 1450
FauI CCCGC 1 cut(s) 1127
FbaI TGATCA 1 cut(s) 454
Fnu4HI GCNGC 6 cut(s) 206, 1050, 1075, 1150, 1552, 1555
Fsp4HI GCNGC 6 cut(s) 206, 1050, 1075, 1150, 1552, 1555
FspBI CTAG 1 cut(s) 1614
FspI TGCGCA 1 cut(s) 342
GlaI GCGC 4 cut(s) 32, 289, 342, 1558
GluI GCNGC 6 cut(s) 206, 1050, 1075, 1150, 1552, 1555
GsuI CTGGAG 1 cut(s) 1299
HaeII RGCGCY 3 cut(s) 34, 291, 1560
HapII CCGG 4 cut(s) 155, 254, 1476, 1587
HgaI GACGC 3 cut(s) 356, 413, 1310
HhaI GCGC 4 cut(s) 33, 290, 343, 1559
Hin1II CATG 5 cut(s) 368, 428, 650, 721, 1454
Hin6I GCGC 4 cut(s) 31, 288, 341, 1557
HinP1I GCGC 4 cut(s) 31, 288, 341, 1557
HinfI GANTC 4 cut(s) 237, 526, 938, 1094
HpaII CCGG 4 cut(s) 155, 254, 1476, 1587
HphI GGTGA 3 cut(s) 107, 169, 800
Hpy166II GTNNAC 5 cut(s) 217, 283, 699, 737, 1535
Hpy188III TCNNGA 8 cut(s) 181, 647, 660, 1098, 1140, 1278, 1286, 1587
Hpy8I GTNNAC 5 cut(s) 217, 283, 699, 737, 1535
Hpy99I CGWCG 1 cut(s) 299
HpyAV CCTTC 6 cut(s) 610, 653, 898, 971, 1133, 1346
HpyCH4III ACNGT 7 cut(s) 20, 136, 250, 280, 413, 1000, 1042
HpyCH4V TGCA 7 cut(s) 391, 468, 1063, 1074, 1270, 1358, 1502
HpyF3I CTNAG 8 cut(s) 42, 209, 381, 666, 820, 1182, 1224, 1296
Hsp92II CATG 5 cut(s) 368, 428, 650, 721, 1454
HspAI GCGC 4 cut(s) 31, 288, 341, 1557
Kpn2I TCCGGA 1 cut(s) 1586
KroI GCCGGC 1 cut(s) 1475
KroNI GCCGGC 1 cut(s) 1477
Ksp22I TGATCA 1 cut(s) 454
Kzo9I GATC 3 cut(s) 454, 662, 1282
LmnI GCTCC 9 cut(s) 265, 340, 607, 760, 815, 829, 1169, 1565, 1574
Lsp1109I GCAGC 5 cut(s) 217, 1061, 1086, 1136, 1566
LweI GCATC 5 cut(s) 112, 644, 826, 1061, 1256
MaeI CTAG 1 cut(s) 1614
MaeIII GTNAC 6 cut(s) 274, 657, 804, 1177, 1318, 1649
MalI GATC 3 cut(s) 456, 664, 1284
MboI GATC 3 cut(s) 454, 662, 1282
MboII GAAGA 9 cut(s) 110, 172, 175, 326, 834, 1034, 1265, 1382, 1575
MflI RGATCY 1 cut(s) 1282
MhlI GDGCHC 2 cut(s) 155, 523
MluCI AATT 9 cut(s) 110, 851, 918, 993, 1101, 1143, 1155, 1194, 1423
MluI ACGCGT 1 cut(s) 348
MmeI TCCRAC 4 cut(s) 27, 775, 899, 1157
MroI TCCGGA 1 cut(s) 1586
MroNI GCCGGC 1 cut(s) 1475
MseI TTAA 7 cut(s) 537, 612, 921, 954, 992, 1154, 1328
MslI CAYNNNNRTG 2 cut(s) 396, 1455
MspA1I CMGCKG 1 cut(s) 208
MspCI CTTAAG 1 cut(s) 536
MspI CCGG 4 cut(s) 155, 254, 1476, 1587
MspR9I CCNGG 3 cut(s) 93, 155, 255
Mva1269I GAATGC 3 cut(s) 37, 531, 1462
MvaI CCWGG 1 cut(s) 93
MvnI CGCG 2 cut(s) 350, 407
NaeI GCCGGC 1 cut(s) 1477
NciI CCSGG 2 cut(s) 155, 255
NdeII GATC 3 cut(s) 454, 662, 1282
NgoMIV GCCGGC 1 cut(s) 1475
NlaIII CATG 5 cut(s) 368, 428, 650, 721, 1454
NlaIV GGNNCC 8 cut(s) 252, 362, 520, 603, 690, 723, 768, 1567
NmeAIII GCCGAG 2 cut(s) 415, 1013
NmuCI GTSAC 2 cut(s) 657, 804
NsbI TGCGCA 1 cut(s) 342
PagI TCATGA 1 cut(s) 646
PctI GAATGC 3 cut(s) 37, 531, 1462
PdiI GCCGGC 1 cut(s) 1477
PfeI GAWTC 4 cut(s) 237, 526, 938, 1094
PflMI CCANNNNNTGG 1 cut(s) 731
PkrI GCNGC 6 cut(s) 207, 1051, 1076, 1151, 1553, 1556
PpuMI RGGWCCY 2 cut(s) 385, 767
PshBI ATTAAT 1 cut(s) 921
Psp5II RGGWCCY 2 cut(s) 385, 767
Psp6I CCWGG 1 cut(s) 91
PspGI CCWGG 1 cut(s) 91
PspN4I GGNNCC 8 cut(s) 252, 362, 520, 603, 690, 723, 768, 1567
PspPI GGNCC 6 cut(s) 361, 385, 722, 734, 767, 1418
PspPPI RGGWCCY 2 cut(s) 385, 767
PstNI CAGNNNCTG 1 cut(s) 1364
PsuI RGATCY 1 cut(s) 1282
PvuII CAGCTG 1 cut(s) 208
RsaI GTAC 5 cut(s) 146, 284, 585, 698, 818
RsaNI GTAC 5 cut(s) 145, 283, 584, 697, 817
RseI CAYNNNNRTG 2 cut(s) 396, 1455
SaqAI TTAA 7 cut(s) 537, 612, 921, 954, 992, 1154, 1328
SatI GCNGC 6 cut(s) 206, 1050, 1075, 1150, 1552, 1555
Sau3AI GATC 3 cut(s) 454, 662, 1282
Sau96I GGNCC 6 cut(s) 361, 385, 722, 734, 767, 1418
ScrFI CCNGG 3 cut(s) 93, 155, 255
SduI GDGCHC 2 cut(s) 155, 523
SfaNI GCATC 5 cut(s) 112, 644, 826, 1061, 1256
SfcI CTRYAG 1 cut(s) 1041
SinI GGWCC 6 cut(s) 361, 385, 722, 734, 767, 1418
SmiMI CAYNNNNRTG 2 cut(s) 396, 1455
SmlI CTYRAG 2 cut(s) 536, 1489
SmoI CTYRAG 2 cut(s) 536, 1489
Sse9I AATT 9 cut(s) 110, 851, 918, 993, 1101, 1143, 1155, 1194, 1423
SsiI CCGC 5 cut(s) 125, 407, 686, 1120, 1551
SspI AATATT 2 cut(s) 886, 1210
SspMI CTAG 1 cut(s) 1614
StyD4I CCNGG 3 cut(s) 91, 153, 253
TaaI ACNGT 7 cut(s) 20, 136, 250, 280, 413, 1000, 1042
TaqI TCGA 1 cut(s) 120
TasI AATT 9 cut(s) 110, 851, 918, 993, 1101, 1143, 1155, 1194, 1423
TatI WGTACW 4 cut(s) 282, 583, 696, 816
TauI GCSGC 1 cut(s) 1554
TfiI GAWTC 4 cut(s) 237, 526, 938, 1094
Tru1I TTAA 7 cut(s) 537, 612, 921, 954, 992, 1154, 1328
Tru9I TTAA 7 cut(s) 537, 612, 921, 954, 992, 1154, 1328
TscAI CASTG 1 cut(s) 1059
TseFI GTSAC 2 cut(s) 657, 804
TseI GCWGC 5 cut(s) 205, 1049, 1074, 1149, 1554
Tsp45I GTSAC 2 cut(s) 657, 804
TspDTI ATGAA 2 cut(s) 103, 635
TspGWI ACGGA 2 cut(s) 78, 1606
TspRI CASTG 1 cut(s) 1059
Van91I CCANNNNNTGG 1 cut(s) 731
Vha464I CTTAAG 1 cut(s) 536
VpaK11BI GGWCC 6 cut(s) 361, 385, 722, 734, 767, 1418
VspI ATTAAT 1 cut(s) 921
XagI CCTNNNNNAGG 1 cut(s) 774
XapI RAATTY 1 cut(s) 851
XspI CTAG 1 cut(s) 1614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.