pycom111g04440

KH domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
Physical Location & Seq
Forward (+)
2674798 .. 2677160
2363 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g04440.2

Sequence Viewer

Length: 1626 bp
ATGGCAGGTCAGAGGAGTAGTTACGGAAAACGTTCGCATTCGCAGTCGGAGTACGCCGACGGCGGCGGAGGAGGAAACAAAAGGAGAAATTCCGGCGAAGAAAGAGAGCAATTCATCATCGATGCGGAGGACACCGTTTACCGTTACTTGTGCCCGGTGAAGAAGATTGGGAGCATAATTGGGAGAGGAGGAGAGATTGTGAAGCAGCTGAGGGTGGACACAAAGTCCAAGATTCGAATCGGCGAGACGGTGCCGGGCAGCGAAGAGCGAGTGGTTACTATTTACAGTGCAAGCGATGAGACGAATGGGTTCGAAGATGGTGGAACGTATGTGGCTCCGGCTCAGGACGCTCTGTTCAAGGTCCATGATAGGGTGATTGCTGAGGACACGCATAATAATAATGACGAGGAAGCGGACGGTAGTGGCGGCGGGGGGCACCATGTGACTGCGCGGCTTCTTGTGCCGTCTGATCAGATTGGTTGCATTATCGGGAAAGGAGGGCAGATTGTTCAGAACATTCGAAGTGAAACCGGTGCGCAGATTCGGATTCTCAAGGAAGACCATTTGCCTTCTTGTGCTTTGAACTCTGATGAGCTTGTGCAGATATCTGGGGAAGCTCCGCTTGTTAAGAAGGCTCTTTTTCAAATTGCATCTCGCCTACATGATAACCCATCACGATCTCAGCATTTGCTTACTTCTTCGGTGCCTATGTATTCTGGTGGTTCACTCATGGGTCCATCTGGTGGCCCCCCACTGATGGGAATTGCTCCAATGATGGGTCCTTATGGAGGGGGGTACAAAGGTGATGTTGGAGACTGGTCACGCTCCTTGTACTCGGCTCCAAGAGATGAAGCATCCTCAAAAGAATTTTCTATTCGCTTGGTTTGTCCAACTGCAAATATTGGAGGTGTGATTGGAAAGGGTGGTACCATAATTAACCAAATTAGACAGGATTCTGGGGCTGTCATTAAAGTTGATAGTTCAGCTACTGAAGGAGATGATTGCCTAATTACTGTATCAGCAAAAGAGTTCTTTGAAGACACATTCTCAGGAACTATAGAAGCAGCAGTGCGTTTGCAACCCAGATGCAGTGAAAAGGTAGAAAGAGATTCAGGAATTGTCTCATTCACAACCCGCCTACTTGTTCCAACCTCACGAATTGGATGCCTAATTGGGAAAGGTGGAGCTATTGTAACTGAGATGAGGAGACTTACCAAAGCTAATATTCGCATACTTTCCAAGGAAAATCTTCCCAAAATTGCATCTGAAGATGATGAAATGGTGCAGATTTCTGGAGACCTTGATATTGCTAAGGATGCTCTTATACAAGTAGTTACCAGATTAAGGGCAAACCTTTTCGACCGGGAAGGTGGAATGTCGGGATTCCTGCCAGTTCTGCCTTATCTTCCTGTGTCAGCTGATGGTCCAGATGGTCCAAATTATGATAGTAGGGATGGTAGAAGACATGGCCGCGGGCATTCATTTTCTGCTGGCTATGGTGGCTCAAGTGATTTTGCAGCTAATGACAGTTACGGAAGTTATGGTGGTTCACAGATTGGTGGTAGCGGCAGCGCTTACGGAGCCTATGGAAGTTATTCTTCTGGGCGGAGTGGTAGTTCTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

542

Amino Acids

57.27

Weight (kDa)

5.79

Isoelectric Point (pI)

46.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 537
Acc65I GGTACC 1 cut(s) 926
AccB1I GGYRCC 4 cut(s) 250, 435, 703, 926
AccB7I CCANNNNNTGG 1 cut(s) 743
AccII CGCG 2 cut(s) 451, 1473
AclI AACGTT 1 cut(s) 31
AcoI YGGCCR 1 cut(s) 1468
AcsI RAATTY 2 cut(s) 88, 866
AcuI CTGAAG 2 cut(s) 1011, 1287
AdeI CACNNNGTG 1 cut(s) 442
AfaI GTAC 4 cut(s) 53, 797, 833, 928
AfeI AGCGCT 1 cut(s) 1573
AfiI CCNNNNNNNGG 7 cut(s) 370, 743, 757, 758, 776, 788, 1344
AgeI ACCGGT 1 cut(s) 530
AgsI TTSAA 4 cut(s) 358, 583, 644, 1037
AhdI GACNNNNNGTC 1 cut(s) 223
AloI GAACNNNNNNTCC 3 cut(s) 338, 370, 1600
AluBI AGCT 8 cut(s) 208, 595, 617, 986, 1187, 1220, 1418, 1520
AluI AGCT 8 cut(s) 208, 595, 617, 986, 1187, 1220, 1418, 1520
Alw26I GTCTC 6 cut(s) 239, 293, 807, 1126, 1201, 1290
AlwNI CAGNNNCTG 1 cut(s) 989
Aor51HI AGCGCT 1 cut(s) 1573
AoxI GGCC 2 cut(s) 745, 1468
ApeKI GCWGC 5 cut(s) 205, 258, 1064, 1517, 1569
ApoI RAATTY 2 cut(s) 88, 866
AsiGI ACCGGT 1 cut(s) 530
Asp700I GAANNNNTTC 4 cut(s) 31, 308, 1248, 1594
Asp718I GGTACC 1 cut(s) 926
AspLEI GCGC 3 cut(s) 451, 538, 1574
AspS9I GGNCC 6 cut(s) 361, 734, 746, 779, 1424, 1433
AsuC2I CCSGG 3 cut(s) 155, 255, 1364
AsuHPI GGTGA 3 cut(s) 169, 385, 815
AsuII TTCGAA 3 cut(s) 235, 312, 520
AvaII GGWCC 5 cut(s) 361, 734, 779, 1424, 1433
BaeGI GKGCMC 2 cut(s) 155, 438
BaeI ACNNNNGTAYC 2 cut(s) 787, 820
BanI GGYRCC 4 cut(s) 250, 435, 703, 926
BbsI GAAGAC 3 cut(s) 564, 1044, 1468
BbvCI CCTCAGC 2 cut(s) 209, 381
BbvI GCAGC 5 cut(s) 217, 270, 1076, 1529, 1581
BccI CCATC 8 cut(s) 311, 679, 745, 751, 769, 1415, 1424, 1448
BceAI ACGGC 2 cut(s) 76, 448
BcgI CGANNNNNNTGC 2 cut(s) 1146, 1180
BclI TGATCA 1 cut(s) 469
BcnI CCSGG 3 cut(s) 155, 255, 1364
BcoDI GTCTC 6 cut(s) 239, 293, 807, 1126, 1201, 1290
BfmI CTRYAG 1 cut(s) 1056
BfoI RGCGCY 1 cut(s) 1575
Bme1390I CCNGG 3 cut(s) 155, 255, 1364
Bme18I GGWCC 5 cut(s) 361, 734, 779, 1424, 1433
BmeRI GACNNNNNGTC 1 cut(s) 223
BmgT120I GGNCC 6 cut(s) 361, 734, 746, 779, 1424, 1433
BmrFI CCNGG 3 cut(s) 155, 255, 1364
BmsI GCATC 7 cut(s) 112, 659, 863, 1076, 1154, 1271, 1306
BpiI GAAGAC 3 cut(s) 564, 1044, 1468
BpmI CTGGAG 1 cut(s) 1314
Bpu10I CCTNAGC 4 cut(s) 209, 342, 381, 1311
Bpu14I TTCGAA 3 cut(s) 235, 312, 520
BpuEI CTTGAG 2 cut(s) 536, 1489
BpuMI CCSGG 3 cut(s) 155, 255, 1364
Bsa29I ATCGAT 1 cut(s) 120
BsaBI GATNNNNATC 1 cut(s) 236
BsaI GGTCTC 1 cut(s) 1290
BsaJI CCNNGG 2 cut(s) 1239, 1471
BsaWI WCCGGW 1 cut(s) 530
BsaXI ACNNNNNCTCC 5 cut(s) 183, 213, 1176, 1206, 1600
Bsc4I CCNNNNNNNGG 7 cut(s) 370, 743, 757, 758, 776, 788, 1344
Bse118I RCCGGY 1 cut(s) 530
Bse1I ACTGG 2 cut(s) 821, 1391
Bse8I GATNNNNATC 1 cut(s) 236
BseCI ATCGAT 1 cut(s) 120
BseDI CCNNGG 2 cut(s) 1239, 1471
BseGI GGATG 4 cut(s) 854, 1169, 1321, 1459
BseJI GATNNNNATC 1 cut(s) 236
BseLI CCNNNNNNNGG 7 cut(s) 370, 743, 757, 758, 776, 788, 1344
BseMII CTCAG 6 cut(s) 200, 356, 372, 695, 1062, 1188
BseNI ACTGG 2 cut(s) 821, 1391
BseRI GAGGAG 5 cut(s) 28, 84, 201, 204, 1219
BseSI GKGCMC 2 cut(s) 155, 438
BseXI GCAGC 5 cut(s) 217, 270, 1076, 1529, 1581
BsgI GTGCAG 2 cut(s) 620, 1304
Bsh1236I CGCG 2 cut(s) 451, 1473
Bsh1285I CGRYCG 1 cut(s) 1363
BshFI GGCC 2 cut(s) 747, 1470
BshNI GGYRCC 4 cut(s) 250, 435, 703, 926
BshTI ACCGGT 1 cut(s) 530
BshVI ATCGAT 1 cut(s) 120
BsiEI CGRYCG 1 cut(s) 1363
BsiSI CCGG 6 cut(s) 93, 155, 254, 338, 531, 1363
BslI CCNNNNNNNGG 7 cut(s) 370, 743, 757, 758, 776, 788, 1344
BsmAI GTCTC 6 cut(s) 239, 293, 807, 1126, 1201, 1290
BsmBI CGTCTC 2 cut(s) 239, 293
BsmI GAATGC 2 cut(s) 37, 1477
BsnI GGCC 2 cut(s) 747, 1470
Bso31I GGTCTC 1 cut(s) 1290
Bsp119I TTCGAA 3 cut(s) 235, 312, 520
Bsp1286I GDGCHC 2 cut(s) 155, 438
Bsp143I GATC 2 cut(s) 469, 677
BspANI GGCC 2 cut(s) 747, 1470
BspCNI CTCAG 6 cut(s) 201, 355, 373, 694, 1061, 1189
BspDI ATCGAT 1 cut(s) 120
BspFNI CGCG 2 cut(s) 451, 1473
BspQI GCTCTTC 1 cut(s) 258
BspT104I TTCGAA 3 cut(s) 235, 312, 520
BspT107I GGYRCC 4 cut(s) 250, 435, 703, 926
BspTNI GGTCTC 1 cut(s) 1290
BsrFI RCCGGY 1 cut(s) 530
BsrI ACTGG 2 cut(s) 821, 1391
BssAI RCCGGY 1 cut(s) 530
BssECI CCNNGG 2 cut(s) 1239, 1471
BssMI GATC 2 cut(s) 469, 677
BssT1I CCWWGG 1 cut(s) 1239
Bst4CI ACNGT 7 cut(s) 136, 143, 250, 287, 419, 1015, 1529
Bst6I CTCTTC 1 cut(s) 258
BstBI TTCGAA 3 cut(s) 235, 312, 520
BstC8I GCNNGC 3 cut(s) 292, 1475, 1492
BstDEI CTNAG 7 cut(s) 209, 342, 381, 681, 1048, 1197, 1311
BstDSI CCRYGG 1 cut(s) 1471
BstENI CCTNNNNNAGG 1 cut(s) 786
BstF5I GGATG 4 cut(s) 854, 1169, 1321, 1459
BstFNI CGCG 2 cut(s) 451, 1473
BstH2I RGCGCY 1 cut(s) 1575
BstHHI GCGC 3 cut(s) 451, 538, 1574
BstKTI GATC 2 cut(s) 472, 680
BstMAI GTCTC 6 cut(s) 239, 293, 807, 1126, 1201, 1290
BstMBI GATC 2 cut(s) 469, 677
BstMCI CGRYCG 1 cut(s) 1363
BstMWI GCNNNNNNNGC 6 cut(s) 347, 460, 1316, 1396, 1500, 1580
BstSCI CCNGG 3 cut(s) 153, 253, 1362
BstSFI CTRYAG 1 cut(s) 1056
BstSLI GKGCMC 2 cut(s) 155, 438
BstUI CGCG 2 cut(s) 451, 1473
BstV1I GCAGC 5 cut(s) 217, 270, 1076, 1529, 1581
BstV2I GAAGAC 3 cut(s) 564, 1044, 1468
Bsu15I ATCGAT 1 cut(s) 120
BsuRI GGCC 2 cut(s) 747, 1470
BsuTUI ATCGAT 1 cut(s) 120
BtgI CCRYGG 1 cut(s) 1471
BtgZI GCGATG 1 cut(s) 309
BtsCI GGATG 4 cut(s) 854, 1169, 1321, 1459
BtsI GCAGTG 2 cut(s) 1074, 1096
BtsIMutI CAGTG 4 cut(s) 292, 752, 1074, 1096
Cac8I GCNNGC 3 cut(s) 292, 1475, 1492
CaiI CAGNNNCTG 1 cut(s) 989
CfoI GCGC 3 cut(s) 451, 538, 1574
Cfr10I RCCGGY 1 cut(s) 530
Cfr13I GGNCC 6 cut(s) 361, 734, 746, 779, 1424, 1433
Cfr42I CCGCGG 1 cut(s) 1474
ClaI ATCGAT 1 cut(s) 120
CseI GACGC 1 cut(s) 356
Csp6I GTAC 4 cut(s) 52, 796, 832, 927
CspAI ACCGGT 1 cut(s) 530
CviAII CATG 5 cut(s) 365, 440, 662, 730, 1466
CviQI GTAC 4 cut(s) 52, 796, 832, 927
DdeI CTNAG 7 cut(s) 209, 342, 381, 681, 1048, 1197, 1311
DpnI GATC 2 cut(s) 471, 679
DpnII GATC 2 cut(s) 469, 677
DraIII CACNNNGTG 1 cut(s) 442
DriI GACNNNNNGTC 1 cut(s) 223
EaeI YGGCCR 1 cut(s) 1468
Eam1104I CTCTTC 1 cut(s) 258
Eam1105I GACNNNNNGTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 258
EciI GGCGGA 2 cut(s) 81, 1621
Eco130I CCWWGG 1 cut(s) 1239
Eco31I GGTCTC 1 cut(s) 1290
Eco32I GATATC 1 cut(s) 606
Eco47I GGWCC 5 cut(s) 361, 734, 779, 1424, 1433
Eco47III AGCGCT 1 cut(s) 1573
Eco57I CTGAAG 2 cut(s) 1011, 1287
EcoNI CCTNNNNNAGG 1 cut(s) 786
EcoO109I RGGNCCY 1 cut(s) 779
EcoRV GATATC 1 cut(s) 606
EcoT14I CCWWGG 1 cut(s) 1239
ErhI CCWWGG 1 cut(s) 1239
Esp3I CGTCTC 2 cut(s) 239, 293
FaeI CATG 5 cut(s) 368, 443, 665, 733, 1469
FalI AAGNNNNNCTT 4 cut(s) 606, 638, 1582, 1614
FatI CATG 5 cut(s) 364, 439, 661, 729, 1465
FauI CCCGC 3 cut(s) 422, 1142, 1466
FbaI TGATCA 1 cut(s) 469
FokI GGATG 4 cut(s) 841, 1176, 1328, 1466
FspI TGCGCA 1 cut(s) 537
GlaI GCGC 3 cut(s) 450, 537, 1573
GsuI CTGGAG 1 cut(s) 1314
HaeII RGCGCY 1 cut(s) 1575
HaeIII GGCC 2 cut(s) 747, 1470
HapII CCGG 6 cut(s) 93, 155, 254, 338, 531, 1363
HgaI GACGC 1 cut(s) 356
HhaI GCGC 3 cut(s) 451, 538, 1574
Hin1II CATG 5 cut(s) 368, 443, 665, 733, 1469
Hin6I GCGC 3 cut(s) 449, 536, 1572
HinP1I GCGC 3 cut(s) 449, 536, 1572
HinfI GANTC 7 cut(s) 232, 237, 541, 547, 953, 1109, 1383
HpaII CCGG 6 cut(s) 93, 155, 254, 338, 531, 1363
HphI GGTGA 3 cut(s) 169, 385, 815
Hpy166II GTNNAC 4 cut(s) 139, 217, 725, 1550
Hpy188I TCNGA 8 cut(s) 12, 49, 469, 474, 513, 546, 589, 1267
Hpy188III TCNNGA 9 cut(s) 344, 490, 675, 1050, 1113, 1155, 1293, 1380, 1427
Hpy8I GTNNAC 4 cut(s) 139, 217, 725, 1550
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 4 cut(s) 579, 625, 986, 1361
HpyCH4III ACNGT 7 cut(s) 136, 143, 250, 287, 419, 1015, 1529
HpyCH4IV ACGT 2 cut(s) 31, 326
HpyF10VI GCNNNNNNNGC 6 cut(s) 347, 460, 1316, 1396, 1500, 1580
HpyF3I CTNAG 7 cut(s) 209, 342, 381, 681, 1048, 1197, 1311
HpySE526I ACGT 2 cut(s) 31, 326
Hsp92II CATG 5 cut(s) 368, 443, 665, 733, 1469
HspAI GCGC 3 cut(s) 449, 536, 1572
KpnI GGTACC 1 cut(s) 930
Ksp22I TGATCA 1 cut(s) 469
KspI CCGCGG 1 cut(s) 1474
Kzo9I GATC 2 cut(s) 469, 677
LguI GCTCTTC 1 cut(s) 258
LmnI GCTCC 8 cut(s) 171, 340, 622, 772, 830, 844, 1184, 1580
Lsp1109I GCAGC 5 cut(s) 217, 270, 1076, 1529, 1581
LweI GCATC 7 cut(s) 112, 659, 863, 1076, 1154, 1271, 1306
MaeII ACGT 2 cut(s) 31, 326
MaeIII GTNAC 8 cut(s) 20, 143, 274, 442, 819, 1192, 1333, 1529
MalI GATC 2 cut(s) 471, 679
MboI GATC 2 cut(s) 469, 677
MhlI GDGCHC 2 cut(s) 155, 438
MmeI TCCRAC 4 cut(s) 27, 790, 914, 1172
MroXI GAANNNNTTC 4 cut(s) 31, 308, 1248, 1594
MseI TTAA 4 cut(s) 627, 936, 969, 1343
MspA1I CMGCKG 3 cut(s) 208, 1418, 1473
MspI CCGG 6 cut(s) 93, 155, 254, 338, 531, 1363
MspR9I CCNGG 3 cut(s) 155, 255, 1364
Mva1269I GAATGC 2 cut(s) 37, 1477
MvnI CGCG 2 cut(s) 451, 1473
MwoI GCNNNNNNNGC 6 cut(s) 347, 460, 1316, 1396, 1500, 1580
NciI CCSGG 3 cut(s) 155, 255, 1364
NdeII GATC 2 cut(s) 469, 677
NlaIII CATG 5 cut(s) 368, 443, 665, 733, 1469
NmeAIII GCCGAG 1 cut(s) 815
NmuCI GTSAC 2 cut(s) 442, 819
NsbI TGCGCA 1 cut(s) 537
NspV TTCGAA 3 cut(s) 235, 312, 520
PciSI GCTCTTC 1 cut(s) 258
PctI GAATGC 2 cut(s) 37, 1477
PdmI GAANNNNTTC 4 cut(s) 31, 308, 1248, 1594
PfeI GAWTC 7 cut(s) 232, 237, 541, 547, 953, 1109, 1383
PflMI CCANNNNNTGG 1 cut(s) 743
PinAI ACCGGT 1 cut(s) 530
PpuMI RGGWCCY 1 cut(s) 779
Psp1406I AACGTT 1 cut(s) 31
Psp5II RGGWCCY 1 cut(s) 779
PspPI GGNCC 6 cut(s) 361, 734, 746, 779, 1424, 1433
PspPPI RGGWCCY 1 cut(s) 779
PstNI CAGNNNCTG 1 cut(s) 989
PvuII CAGCTG 2 cut(s) 208, 1418
RsaI GTAC 4 cut(s) 53, 797, 833, 928
RsaNI GTAC 4 cut(s) 52, 796, 832, 927
SacII CCGCGG 1 cut(s) 1474
SapI GCTCTTC 1 cut(s) 258
SaqAI TTAA 4 cut(s) 627, 936, 969, 1343
Sau3AI GATC 2 cut(s) 469, 677
Sau96I GGNCC 6 cut(s) 361, 734, 746, 779, 1424, 1433
ScrFI CCNGG 3 cut(s) 155, 255, 1364
SduI GDGCHC 2 cut(s) 155, 438
SfaNI GCATC 7 cut(s) 112, 659, 863, 1076, 1154, 1271, 1306
SfcI CTRYAG 1 cut(s) 1056
Sfr303I CCGCGG 1 cut(s) 1474
SfuI TTCGAA 3 cut(s) 235, 312, 520
SgrBI CCGCGG 1 cut(s) 1474
SinI GGWCC 5 cut(s) 361, 734, 779, 1424, 1433
SmlI CTYRAG 2 cut(s) 551, 1504
SmoI CTYRAG 2 cut(s) 551, 1504
SspI AATATT 2 cut(s) 901, 1225
StyD4I CCNGG 3 cut(s) 153, 253, 1362
StyI CCWWGG 1 cut(s) 1239
TaaI ACNGT 7 cut(s) 136, 143, 250, 287, 419, 1015, 1529
TaiI ACGT 2 cut(s) 34, 329
TaqI TCGA 5 cut(s) 120, 235, 312, 520, 1359
TatI WGTACW 1 cut(s) 831
TauI GCSGC 5 cut(s) 66, 429, 454, 1473, 1569
TfiI GAWTC 7 cut(s) 232, 237, 541, 547, 953, 1109, 1383
Tru1I TTAA 4 cut(s) 627, 936, 969, 1343
Tru9I TTAA 4 cut(s) 627, 936, 969, 1343
TscAI CASTG 4 cut(s) 292, 759, 1074, 1096
TseFI GTSAC 2 cut(s) 442, 819
TseI GCWGC 5 cut(s) 205, 258, 1064, 1517, 1569
Tsp45I GTSAC 2 cut(s) 442, 819
TspDTI ATGAA 4 cut(s) 103, 864, 1290, 1470
TspGWI ACGGA 3 cut(s) 39, 1548, 1593
TspRI CASTG 4 cut(s) 292, 759, 1074, 1096
Van91I CCANNNNNTGG 1 cut(s) 743
VpaK11BI GGWCC 5 cut(s) 361, 734, 779, 1424, 1433
XagI CCTNNNNNAGG 1 cut(s) 786
XapI RAATTY 2 cut(s) 88, 866
XmnI GAANNNNTTC 4 cut(s) 31, 308, 1248, 1594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.