MD00G1125600.v1.1

KH domain-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Forward (+)
26733190 .. 26737939
4750 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1125600.v1.1.491

Sequence Viewer

Length: 1686 bp
ATGGCAGGTCAGAGGAATAGTCACGGAAAGCGTTCTCATTCGCAGTCGGAGTACGCCGACAGCGGCGGCGGAGGAGGAAACAAAAGGAGAAATCCCGGCGAGGAAAGGGAGCAATTCATCATCGATGCGGAGGACACGGTGTACCGGTACTTGTGCCCAGTGAAGAAGATTGGGAGCATAATTGGGAGAGGAGGAGAGATTGTGAAGCAGCTGAGGGGGGACACCAAGTCCAAGATTCGAATTGGGGAGACGGTGCCGGGCAGCGAGGAGCGGGTTGTTACTATTTACAGTGCGAGCGATGAGACGAATGGGTTCGAAGATGGCGGGACGTATGTGGCTCCGGCTCAGGACGCTCTGTTCAGGGTCCATGATAGGGTGATTGCTGAGGACACGCATAATAATAACGACGAGGAGGCGGACGGTGGCAGTAGTGGTGGCGGGGGGCACCATGTGATTGTGCGGCTTCTTGTGCCGTCTGATCAGATCGGTTGCATTATTGGGAAAGGAGGGCAGATTGTTCAGAACATTCGGAGTGAAACCGGTGCACAGATTCGGATTCTCAAGGATGACCATCTGCCTGCTTGTGCCTTGAACTCTGATGAGCTTGTGCAGATATCTGGGGACGCTCCACTTGTCAAGAAGGCTCTTTTTCAAATTGCATCTCGCCTTCATGATAACCCATCACGATCTCAGCATTTACTTACTTCTTCGGTGCCTATGTATTCGGGTGGTTCACTCATGGGTCCTTCTGGTGGTCCCCCACTAATGGGAATTGCTCCAATGATGGGTCCTTATGGAGGGGGGTACAAAGGTGATGTTGGAGACTGGTCACGCTCCTTGTACTCAGCTCCAAGAGATGAAGCATCCTCGAAAGAATTTTCTATTCGCTTGGTTTGTCCAACTGCGAATATTGGAGGTGTGATTGGAAAGGGTGGTACCATAATTAACCAAATCAGACAGGATTCGGGGGCTGTTATTAAGGTTGATAGTTCAGCTACTGAAGGAGATGATTGCTTAATTAATGTATCAGCAAAAGAGTTCTTTGAAGACTCGTTCTCAGCAACTATTGAAGCAGCAGTGCGTTTGCAACCCAGATGCAGTGAAAAAGTAGAAAGAGATTCAGGAATTATCTCATTCACAACCCGCCTACTTGTTCCAACCTCACGAATTGGCTGCCTAATTGGGAAAGGTGGGGCTATTGTAACTGAGATGAGGAGACTTACCAAAGCTAATATTCGCATACTTTCTAAGGAAAATCTTCCCAAAATTGCATCTGAAGATGATGAGATGGTGCAGATTTCTGGAGAACTTGATATTGTTAAGGATGCTCTTATACAAGTAGTTACCAGATTAAGAGCAAACCTTTTCGACAGGGAAGGTGGAATGCCTGGATTCCTGCCAGTTCTGCCTTATCTTCCTGTGTCAGCAGATGGTCCAGATGGTCCGAATTATGATAGTAGGGATGGTAAAAGACATGGTCGTGGGCATTCTTATTCTGCTGGCTATGGTGGCTCAAGTGATTTTGCTACTAATGACAGTTATGGAAGTTATGGTGGTTCGCAGATTGGTGGTAGCGGCAGCGCTTACGGTGCCTACGGGGGTTATTCTTCCGGGCGGAGTGGTTATCTAGCCAGAACCCTGTTTCTCGGAGGAGAAACTATGTTTAATGATGGTACCAGCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

562

Amino Acids

59.5

Weight (kDa)

5.76

Isoelectric Point (pI)

45.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_1 PF00013 48 - 97 3.4e-11 KH domain
KH_1 PF00013 153 - 220 4.7e-17 KH domain
KH_1 PF00013 295 - 344 3e-10 KH domain
KH_1 PF00013 380 - 446 5.9e-13 KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 935, 1673
AccB1I GGYRCC 6 cut(s) 253, 444, 712, 935, 1589, 1673
AccBSI CCGCTC 1 cut(s) 271
AcsI RAATTY 1 cut(s) 875
AcuI CTGAAG 2 cut(s) 1020, 1296
AdeI CACNNNGTG 1 cut(s) 451
AfaI GTAC 7 cut(s) 53, 143, 149, 806, 842, 937, 1675
AfeI AGCGCT 1 cut(s) 1582
AfiI CCNNNNNNNGG 6 cut(s) 373, 752, 766, 767, 785, 797
AgeI ACCGGT 2 cut(s) 144, 539
AgsI TTSAA 4 cut(s) 592, 653, 1046, 1070
AhdI GACNNNNNGTC 1 cut(s) 226
AjnI CCWGG 1 cut(s) 1387
AloI GAACNNNNNNTCC 2 cut(s) 341, 373
AluBI AGCT 6 cut(s) 211, 604, 848, 995, 1229, 1683
AluI AGCT 6 cut(s) 211, 604, 848, 995, 1229, 1683
Alw21I GWGCWC 1 cut(s) 547
Alw26I GTCTC 4 cut(s) 242, 296, 816, 1210
Alw44I GTGCAC 1 cut(s) 543
AlwNI CAGNNNCTG 2 cut(s) 998, 1683
Aor51HI AGCGCT 1 cut(s) 1582
ApaLI GTGCAC 1 cut(s) 543
ApeKI GCWGC 6 cut(s) 208, 261, 1073, 1173, 1578, 1680
ApoI RAATTY 1 cut(s) 875
AseI ATTAAT 1 cut(s) 1020
AsiGI ACCGGT 2 cut(s) 144, 539
Asp700I GAANNNNTTC 3 cut(s) 31, 311, 1257
Asp718I GGTACC 2 cut(s) 935, 1673
AspLEI GCGC 1 cut(s) 1583
AspS9I GGNCC 6 cut(s) 364, 743, 755, 788, 1433, 1442
AsuC2I CCSGG 3 cut(s) 96, 258, 1612
AsuHPI GGTGA 2 cut(s) 388, 824
AsuII TTCGAA 2 cut(s) 238, 315
AvaII GGWCC 6 cut(s) 364, 743, 755, 788, 1433, 1442
BaeGI GKGCMC 3 cut(s) 158, 447, 547
BaeI ACNNNNGTAYC 2 cut(s) 796, 829
BanI GGYRCC 6 cut(s) 253, 444, 712, 935, 1589, 1673
BbsI GAAGAC 1 cut(s) 1053
Bbv12I GWGCWC 1 cut(s) 547
BbvCI CCTCAGC 2 cut(s) 212, 384
BbvI GCAGC 5 cut(s) 220, 273, 1085, 1160, 1590
BccI CCATC 9 cut(s) 314, 579, 688, 778, 1282, 1424, 1433, 1457, 1664
BceAI ACGGC 1 cut(s) 457
BcgI CGANNNNNNTGC 2 cut(s) 1155, 1189
BciT130I CCWGG 1 cut(s) 1389
BclI TGATCA 1 cut(s) 478
BcnI CCSGG 3 cut(s) 96, 258, 1612
BcoDI GTCTC 4 cut(s) 242, 296, 816, 1210
BfaI CTAG 1 cut(s) 1628
BfoI RGCGCY 1 cut(s) 1584
Bme1390I CCNGG 4 cut(s) 96, 258, 1389, 1612
Bme18I GGWCC 6 cut(s) 364, 743, 755, 788, 1433, 1442
BmeRI GACNNNNNGTC 1 cut(s) 226
BmgT120I GGNCC 6 cut(s) 364, 743, 755, 788, 1433, 1442
BmrFI CCNGG 4 cut(s) 96, 258, 1389, 1612
BmrI ACTGGG 1 cut(s) 152
BmsI GCATC 6 cut(s) 115, 668, 872, 1085, 1280, 1315
BmuI ACTGGG 1 cut(s) 152
BpiI GAAGAC 1 cut(s) 1053
BpmI CTGGAG 1 cut(s) 1323
Bpu10I CCTNAGC 3 cut(s) 212, 345, 384
Bpu14I TTCGAA 2 cut(s) 238, 315
BpuEI CTTGAG 2 cut(s) 545, 1498
BpuMI CCSGG 3 cut(s) 96, 258, 1612
Bsa29I ATCGAT 1 cut(s) 123
BsaBI GATNNNNATC 1 cut(s) 570
BsaWI WCCGGW 2 cut(s) 144, 539
BsaXI ACNNNNNCTCC 2 cut(s) 186, 216
Bsc4I CCNNNNNNNGG 6 cut(s) 373, 752, 766, 767, 785, 797
Bse118I RCCGGY 2 cut(s) 144, 539
Bse1I ACTGG 3 cut(s) 158, 830, 1400
Bse8I GATNNNNATC 1 cut(s) 570
BseBI CCWGG 1 cut(s) 1389
BseCI ATCGAT 1 cut(s) 123
BseGI GGATG 4 cut(s) 571, 863, 1330, 1468
BseJI GATNNNNATC 1 cut(s) 570
BseLI CCNNNNNNNGG 6 cut(s) 373, 752, 766, 767, 785, 797
BseMII CTCAG 7 cut(s) 203, 359, 375, 704, 858, 1071, 1197
BseNI ACTGG 3 cut(s) 158, 830, 1400
BseRI GAGGAG 7 cut(s) 87, 204, 207, 281, 425, 1228, 1665
BseSI GKGCMC 3 cut(s) 158, 447, 547
BseXI GCAGC 5 cut(s) 220, 273, 1085, 1160, 1590
BsgI GTGCAG 2 cut(s) 629, 1313
BshNI GGYRCC 6 cut(s) 253, 444, 712, 935, 1589, 1673
BshTI ACCGGT 2 cut(s) 144, 539
BshVI ATCGAT 1 cut(s) 123
BsiHKAI GWGCWC 1 cut(s) 547
BsiSI CCGG 6 cut(s) 96, 145, 257, 341, 540, 1611
BslFI GGGAC 4 cut(s) 233, 340, 635, 741
BslI CCNNNNNNNGG 6 cut(s) 373, 752, 766, 767, 785, 797
BsmAI GTCTC 4 cut(s) 242, 296, 816, 1210
BsmBI CGTCTC 2 cut(s) 242, 296
BsmFI GGGAC 4 cut(s) 233, 340, 635, 741
BsmI GAATGC 2 cut(s) 1389, 1486
Bsp119I TTCGAA 2 cut(s) 238, 315
Bsp1286I GDGCHC 3 cut(s) 158, 447, 547
Bsp143I GATC 3 cut(s) 478, 483, 686
BspCNI CTCAG 7 cut(s) 204, 358, 376, 703, 857, 1070, 1198
BspDI ATCGAT 1 cut(s) 123
BspHI TCATGA 1 cut(s) 670
BspT104I TTCGAA 2 cut(s) 238, 315
BspT107I GGYRCC 6 cut(s) 253, 444, 712, 935, 1589, 1673
BsrBI CCGCTC 1 cut(s) 271
BsrFI RCCGGY 2 cut(s) 144, 539
BsrI ACTGG 3 cut(s) 158, 830, 1400
BssAI RCCGGY 2 cut(s) 144, 539
BssMI GATC 3 cut(s) 478, 483, 686
Bst2UI CCWGG 1 cut(s) 1389
Bst4CI ACNGT 6 cut(s) 139, 253, 290, 422, 1538, 1589
BstBI TTCGAA 2 cut(s) 238, 315
BstC8I GCNNGC 3 cut(s) 295, 579, 1501
BstDEI CTNAG 8 cut(s) 212, 345, 384, 690, 844, 1057, 1206, 1248
BstENI CCTNNNNNAGG 1 cut(s) 795
BstF5I GGATG 4 cut(s) 571, 863, 1330, 1468
BstH2I RGCGCY 1 cut(s) 1584
BstHHI GCGC 1 cut(s) 1583
BstKTI GATC 3 cut(s) 481, 486, 689
BstMAI GTCTC 4 cut(s) 242, 296, 816, 1210
BstMBI GATC 3 cut(s) 478, 483, 686
BstMWI GCNNNNNNNGC 5 cut(s) 350, 469, 1405, 1509, 1589
BstNI CCWGG 1 cut(s) 1389
BstSCI CCNGG 4 cut(s) 94, 256, 1387, 1610
BstSLI GKGCMC 3 cut(s) 158, 447, 547
BstV1I GCAGC 5 cut(s) 220, 273, 1085, 1160, 1590
BstV2I GAAGAC 1 cut(s) 1053
Bsu15I ATCGAT 1 cut(s) 123
BsuTUI ATCGAT 1 cut(s) 123
BtgZI GCGATG 1 cut(s) 312
BtsCI GGATG 4 cut(s) 571, 863, 1330, 1468
BtsI GCAGTG 2 cut(s) 1083, 1105
BtsIMutI CAGTG 4 cut(s) 165, 295, 1083, 1105
Cac8I GCNNGC 3 cut(s) 295, 579, 1501
CaiI CAGNNNCTG 2 cut(s) 998, 1683
CciI TCATGA 1 cut(s) 670
CfoI GCGC 1 cut(s) 1583
Cfr10I RCCGGY 2 cut(s) 144, 539
Cfr13I GGNCC 6 cut(s) 364, 743, 755, 788, 1433, 1442
ClaI ATCGAT 1 cut(s) 123
CseI GACGC 2 cut(s) 359, 632
Csp6I GTAC 7 cut(s) 52, 142, 148, 805, 841, 936, 1674
CspAI ACCGGT 2 cut(s) 144, 539
CviAII CATG 5 cut(s) 368, 449, 671, 739, 1475
CviQI GTAC 7 cut(s) 52, 142, 148, 805, 841, 936, 1674
DdeI CTNAG 8 cut(s) 212, 345, 384, 690, 844, 1057, 1206, 1248
DpnI GATC 3 cut(s) 480, 485, 688
DpnII GATC 3 cut(s) 478, 483, 686
DraIII CACNNNGTG 1 cut(s) 451
DriI GACNNNNNGTC 1 cut(s) 226
Eam1105I GACNNNNNGTC 1 cut(s) 226
EciI GGCGGA 3 cut(s) 84, 431, 1630
Eco32I GATATC 1 cut(s) 615
Eco47I GGWCC 6 cut(s) 364, 743, 755, 788, 1433, 1442
Eco47III AGCGCT 1 cut(s) 1582
Eco57I CTGAAG 2 cut(s) 1020, 1296
EcoNI CCTNNNNNAGG 1 cut(s) 795
EcoO109I RGGNCCY 2 cut(s) 743, 788
EcoRII CCWGG 1 cut(s) 1387
EcoRV GATATC 1 cut(s) 615
Esp3I CGTCTC 2 cut(s) 242, 296
FaeI CATG 5 cut(s) 371, 452, 674, 742, 1478
FaqI GGGAC 4 cut(s) 233, 340, 635, 741
FatI CATG 5 cut(s) 367, 448, 670, 738, 1474
FauI CCCGC 4 cut(s) 264, 317, 431, 1151
FbaI TGATCA 1 cut(s) 478
FokI GGATG 4 cut(s) 578, 850, 1337, 1475
FspBI CTAG 1 cut(s) 1628
GlaI GCGC 1 cut(s) 1582
GsuI CTGGAG 1 cut(s) 1323
HaeII RGCGCY 1 cut(s) 1584
HapII CCGG 6 cut(s) 96, 145, 257, 341, 540, 1611
HgaI GACGC 2 cut(s) 359, 632
HhaI GCGC 1 cut(s) 1583
Hin1II CATG 5 cut(s) 371, 452, 674, 742, 1478
Hin6I GCGC 1 cut(s) 1581
HinP1I GCGC 1 cut(s) 1581
HinfI GANTC 7 cut(s) 235, 550, 556, 962, 1049, 1118, 1392
HpaII CCGG 6 cut(s) 96, 145, 257, 341, 540, 1611
HphI GGTGA 2 cut(s) 388, 824
Hpy166II GTNNAC 3 cut(s) 142, 545, 734
Hpy188III TCNNGA 8 cut(s) 347, 637, 671, 684, 1122, 1164, 1302, 1436
Hpy8I GTNNAC 3 cut(s) 142, 545, 734
Hpy99I CGWCG 1 cut(s) 410
HpyAV CCTTC 5 cut(s) 634, 677, 756, 995, 1370
HpyCH4III ACNGT 6 cut(s) 139, 253, 290, 422, 1538, 1589
HpyCH4IV ACGT 1 cut(s) 329
HpyCH4V TGCA 8 cut(s) 492, 545, 610, 659, 1087, 1098, 1271, 1294
HpyF10VI GCNNNNNNNGC 5 cut(s) 350, 469, 1405, 1509, 1589
HpyF3I CTNAG 8 cut(s) 212, 345, 384, 690, 844, 1057, 1206, 1248
HpySE526I ACGT 1 cut(s) 329
Hsp92II CATG 5 cut(s) 371, 452, 674, 742, 1478
HspAI GCGC 1 cut(s) 1581
KpnI GGTACC 2 cut(s) 939, 1677
Ksp22I TGATCA 1 cut(s) 478
Kzo9I GATC 3 cut(s) 478, 483, 686
LmnI GCTCC 8 cut(s) 109, 174, 268, 343, 631, 781, 839, 853
Lsp1109I GCAGC 5 cut(s) 220, 273, 1085, 1160, 1590
LweI GCATC 6 cut(s) 115, 668, 872, 1085, 1280, 1315
MaeI CTAG 1 cut(s) 1628
MaeII ACGT 1 cut(s) 329
MaeIII GTNAC 5 cut(s) 20, 277, 828, 1201, 1342
MalI GATC 3 cut(s) 480, 485, 688
MbiI CCGCTC 1 cut(s) 271
MboI GATC 3 cut(s) 478, 483, 686
MboII GAAGA 9 cut(s) 175, 178, 329, 699, 1058, 1250, 1289, 1406, 1599
MhlI GDGCHC 3 cut(s) 158, 447, 547
MlyI GAGTC 1 cut(s) 1043
MmeI TCCRAC 4 cut(s) 27, 799, 923, 1181
MroXI GAANNNNTTC 3 cut(s) 31, 311, 1257
MseI TTAA 7 cut(s) 945, 978, 1016, 1020, 1320, 1352, 1665
MslI CAYNNNNRTG 1 cut(s) 1479
MspA1I CMGCKG 3 cut(s) 63, 211, 1683
MspI CCGG 6 cut(s) 96, 145, 257, 341, 540, 1611
MspR9I CCNGG 4 cut(s) 96, 258, 1389, 1612
Mva1269I GAATGC 2 cut(s) 1389, 1486
MvaI CCWGG 1 cut(s) 1389
MwoI GCNNNNNNNGC 5 cut(s) 350, 469, 1405, 1509, 1589
NciI CCSGG 3 cut(s) 96, 258, 1612
NdeII GATC 3 cut(s) 478, 483, 686
NlaIII CATG 5 cut(s) 371, 452, 674, 742, 1478
NmuCI GTSAC 2 cut(s) 20, 828
NspV TTCGAA 2 cut(s) 238, 315
PacI TTAATTAA 1 cut(s) 1020
PagI TCATGA 1 cut(s) 670
PctI GAATGC 2 cut(s) 1389, 1486
PdmI GAANNNNTTC 3 cut(s) 31, 311, 1257
PfeI GAWTC 6 cut(s) 235, 550, 556, 962, 1118, 1392
PflFI GACNNNGTC 1 cut(s) 1476
PinAI ACCGGT 2 cut(s) 144, 539
PleI GAGTC 1 cut(s) 1043
PpsI GAGTC 1 cut(s) 1043
PpuMI RGGWCCY 2 cut(s) 743, 788
PshBI ATTAAT 1 cut(s) 1020
Psp5II RGGWCCY 2 cut(s) 743, 788
Psp6I CCWGG 1 cut(s) 1387
PspGI CCWGG 1 cut(s) 1387
PspPI GGNCC 6 cut(s) 364, 743, 755, 788, 1433, 1442
PspPPI RGGWCCY 2 cut(s) 743, 788
PstNI CAGNNNCTG 2 cut(s) 998, 1683
PsyI GACNNNGTC 1 cut(s) 1476
PvuII CAGCTG 2 cut(s) 211, 1683
RsaI GTAC 7 cut(s) 53, 143, 149, 806, 842, 937, 1675
RsaNI GTAC 7 cut(s) 52, 142, 148, 805, 841, 936, 1674
RseI CAYNNNNRTG 1 cut(s) 1479
SaqAI TTAA 7 cut(s) 945, 978, 1016, 1020, 1320, 1352, 1665
Sau3AI GATC 3 cut(s) 478, 483, 686
Sau96I GGNCC 6 cut(s) 364, 743, 755, 788, 1433, 1442
SchI GAGTC 1 cut(s) 1043
ScrFI CCNGG 4 cut(s) 96, 258, 1389, 1612
SduI GDGCHC 3 cut(s) 158, 447, 547
SfaNI GCATC 6 cut(s) 115, 668, 872, 1085, 1280, 1315
SfuI TTCGAA 2 cut(s) 238, 315
SinI GGWCC 6 cut(s) 364, 743, 755, 788, 1433, 1442
SmiMI CAYNNNNRTG 1 cut(s) 1479
SmlI CTYRAG 2 cut(s) 560, 1513
SmoI CTYRAG 2 cut(s) 560, 1513
SspI AATATT 2 cut(s) 910, 1234
SspMI CTAG 1 cut(s) 1628
StyD4I CCNGG 4 cut(s) 94, 256, 1387, 1610
TaaI ACNGT 6 cut(s) 139, 253, 290, 422, 1538, 1589
TaiI ACGT 1 cut(s) 332
TaqI TCGA 5 cut(s) 123, 238, 315, 869, 1368
TatI WGTACW 1 cut(s) 840
TauI GCSGC 4 cut(s) 66, 69, 463, 1578
TfiI GAWTC 6 cut(s) 235, 550, 556, 962, 1118, 1392
Tru1I TTAA 7 cut(s) 945, 978, 1016, 1020, 1320, 1352, 1665
Tru9I TTAA 7 cut(s) 945, 978, 1016, 1020, 1320, 1352, 1665
TscAI CASTG 4 cut(s) 165, 295, 1083, 1105
TseFI GTSAC 2 cut(s) 20, 828
TseI GCWGC 6 cut(s) 208, 261, 1073, 1173, 1578, 1680
Tsp45I GTSAC 2 cut(s) 20, 828
TspDTI ATGAA 3 cut(s) 106, 659, 873
TspGWI ACGGA 1 cut(s) 39
TspRI CASTG 4 cut(s) 165, 295, 1083, 1105
Tth111I GACNNNGTC 1 cut(s) 1476
VneI GTGCAC 1 cut(s) 543
VpaK11BI GGWCC 6 cut(s) 364, 743, 755, 788, 1433, 1442
VspI ATTAAT 1 cut(s) 1020
XagI CCTNNNNNAGG 1 cut(s) 795
XapI RAATTY 1 cut(s) 875
XmnI GAANNNNTTC 3 cut(s) 31, 311, 1257
XspI CTAG 1 cut(s) 1628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.