AT2G03110

KH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0003559
Physical Location & Seq
Forward (+)
934787 .. 936862
2076 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G03110.1

Sequence Viewer

Length: 462 bp
ATGAGGGTAAACGAGGCATTGCCTGGTTGTGATGAGCGTGTTGTGACTATATATTCTAATAGCGAGGAGAGAAATCGTATTGAAGATGACAATGAGGATTTTGTCTGTCCTGCTTTTGATGCTCTTTTCAAGGTTCATGATATGGTTGTTGTTGAAGAATTTGACGATGATGATGATTATAATGACAATGATGAGTATAGTGAGGGACAAACAGTTGTTACTGTGAGGATGCTTGTGCCTTCTGATCAAATTGGTTATCTTATTGGCAAAGGTGGACCAATTATTCAAACGCTGCGTAATGACACTAATGCTCAGATTCGTGTTAGAAATGATAATCTACCCATGTGTGCTTTGGCATTGAGTCATGATGAGCTTCTTCAGATAATTGGAGATCCTTCTGCTGTTAGAGAAGCTCTTTACCAAGTTGCCTTTCTGCTTTATAATAATCCGTCACGATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1

Protein Analysis

153

Amino Acids

17.38

Weight (kDa)

4.16

Isoelectric Point (pI)

34.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_1 PF00013 74 - 142 2.8e-16 KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 180, 441
AclWI GGATC 1 cut(s) 386
AcsI RAATTY 1 cut(s) 158
AcuI CTGAAG 1 cut(s) 362
AgsI TTSAA 4 cut(s) 83, 130, 155, 287
AjnI CCWGG 1 cut(s) 22
AjuI GAANNNNNNNTTGG 2 cut(s) 414, 446
AluBI AGCT 2 cut(s) 373, 413
AluI AGCT 2 cut(s) 373, 413
AlwI GGATC 1 cut(s) 386
ApeKI GCWGC 1 cut(s) 292
ApoI RAATTY 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 275
AvaII GGWCC 1 cut(s) 275
BbvI GCAGC 1 cut(s) 279
BciT130I CCWGG 1 cut(s) 24
BclI TGATCA 1 cut(s) 244
BisI GCNGC 1 cut(s) 293
BlsI GCNGC 1 cut(s) 294
Bme1390I CCNGG 1 cut(s) 24
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 275
BmrFI CCNGG 1 cut(s) 24
BmsI GCATC 2 cut(s) 109, 219
Bse3DI GCAATG 1 cut(s) 17
BseBI CCWGG 1 cut(s) 24
BseGI GGATG 1 cut(s) 234
BseMI GCAATG 1 cut(s) 17
BseMII CTCAG 1 cut(s) 326
BseRI GAGGAG 1 cut(s) 80
BseXI GCAGC 1 cut(s) 279
BslFI GGGAC 1 cut(s) 219
BsmFI GGGAC 1 cut(s) 219
Bsp143I GATC 2 cut(s) 244, 391
BspCNI CTCAG 1 cut(s) 325
BspHI TCATGA 2 cut(s) 136, 364
BspPI GGATC 1 cut(s) 386
BsrDI GCAATG 1 cut(s) 17
BssMI GATC 2 cut(s) 244, 391
Bst2UI CCWGG 1 cut(s) 24
Bst4CI ACNGT 2 cut(s) 214, 223
BstDEI CTNAG 1 cut(s) 312
BstF5I GGATG 1 cut(s) 234
BstKTI GATC 2 cut(s) 247, 394
BstMBI GATC 2 cut(s) 244, 391
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstNI CCWGG 1 cut(s) 24
BstSCI CCNGG 1 cut(s) 22
BstV1I GCAGC 1 cut(s) 279
BstX2I RGATCY 1 cut(s) 391
BstYI RGATCY 1 cut(s) 391
BtsCI GGATG 1 cut(s) 234
CciI TCATGA 2 cut(s) 136, 364
Cfr13I GGNCC 1 cut(s) 275
CviAII CATG 3 cut(s) 137, 343, 365
CviJI RGCY 2 cut(s) 373, 413
CviKI_1 RGCY 2 cut(s) 373, 413
DdeI CTNAG 1 cut(s) 312
DpnI GATC 2 cut(s) 246, 393
DpnII GATC 2 cut(s) 244, 391
Eco47I GGWCC 1 cut(s) 275
Eco57I CTGAAG 1 cut(s) 362
EcoRII CCWGG 1 cut(s) 22
FaeI CATG 3 cut(s) 140, 346, 368
FaiI YATR 9 cut(s) 50, 52, 138, 143, 180, 198, 344, 366, 441
FaqI GGGAC 1 cut(s) 219
FatI CATG 3 cut(s) 136, 342, 364
FbaI TGATCA 1 cut(s) 244
Fnu4HI GCNGC 1 cut(s) 293
FokI GGATG 1 cut(s) 241
Fsp4HI GCNGC 1 cut(s) 293
GluI GCNGC 1 cut(s) 293
Hin1II CATG 3 cut(s) 140, 346, 368
HinfI GANTC 2 cut(s) 316, 361
Hpy166II GTNNAC 2 cut(s) 10, 275
Hpy188I TCNGA 3 cut(s) 244, 315, 381
Hpy188III TCNNGA 3 cut(s) 137, 365, 453
Hpy8I GTNNAC 2 cut(s) 10, 275
HpyAV CCTTC 2 cut(s) 249, 405
HpyCH4III ACNGT 2 cut(s) 214, 223
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
HpyF3I CTNAG 1 cut(s) 312
Hsp92II CATG 3 cut(s) 140, 346, 368
Ksp22I TGATCA 1 cut(s) 244
Kzo9I GATC 2 cut(s) 244, 391
LpnPI CCDG 3 cut(s) 9, 36, 123
Lsp1109I GCAGC 1 cut(s) 279
LweI GCATC 2 cut(s) 109, 219
MaeIII GTNAC 3 cut(s) 43, 217, 450
MalI GATC 2 cut(s) 246, 393
MboI GATC 2 cut(s) 244, 391
MboII GAAGA 3 cut(s) 95, 167, 368
MflI RGATCY 1 cut(s) 391
MluCI AATT 4 cut(s) 158, 249, 279, 384
MlyI GAGTC 1 cut(s) 370
MnlI CCTC 5 cut(s) 7, 58, 88, 196, 219
MspR9I CCNGG 1 cut(s) 24
MvaI CCWGG 1 cut(s) 24
MwoI GCNNNNNNNGC 1 cut(s) 119
NdeII GATC 2 cut(s) 244, 391
NlaIII CATG 3 cut(s) 140, 346, 368
NmuCI GTSAC 2 cut(s) 43, 450
PagI TCATGA 2 cut(s) 136, 364
PfeI GAWTC 1 cut(s) 316
PkrI GCNGC 1 cut(s) 294
PleI GAGTC 1 cut(s) 369
PpsI GAGTC 1 cut(s) 369
PsiI TTATAA 2 cut(s) 180, 441
Psp6I CCWGG 1 cut(s) 22
PspGI CCWGG 1 cut(s) 22
PspPI GGNCC 1 cut(s) 275
PsuI RGATCY 1 cut(s) 391
SatI GCNGC 1 cut(s) 293
Sau3AI GATC 2 cut(s) 244, 391
Sau96I GGNCC 1 cut(s) 275
SchI GAGTC 1 cut(s) 370
ScrFI CCNGG 1 cut(s) 24
SetI ASST 4 cut(s) 135, 274, 375, 415
SfaNI GCATC 2 cut(s) 109, 219
SinI GGWCC 1 cut(s) 275
Sse9I AATT 4 cut(s) 158, 249, 279, 384
StyD4I CCNGG 1 cut(s) 22
TaaI ACNGT 2 cut(s) 214, 223
TasI AATT 4 cut(s) 158, 249, 279, 384
TfiI GAWTC 1 cut(s) 316
TseFI GTSAC 2 cut(s) 43, 450
TseI GCWGC 1 cut(s) 292
Tsp45I GTSAC 2 cut(s) 43, 450
TspDTI ATGAA 1 cut(s) 125
TspGWI ACGGA 1 cut(s) 438
VpaK11BI GGWCC 1 cut(s) 275
XapI RAATTY 1 cut(s) 158
XcmI CCANNNNNNNNNTGG 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.