Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8465399.1

Orthogroup ID

OG0003559

Physical Location & Seq

Genomic Coordinates Reverse (-)

429 .. 1872

Gene Structure 1444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8465399.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

atgatttgtccaactgcaaatattggaggtgtgattgggaagggtggtgtcatcattaatcaaatcagacaggaatctggggctgctataaaagtcgatagttcacaatctgaaggagatgattgcttaataactgttactgcaaaggagttcttcgaagatcaatactcgtcagttgtagaagcagcagtgcgtttgcaaccaagatgcagtgagaaagttgaaagggattcagggatcctctcgttcacaacccgcgtacttgttccaacctcacgaattggctgccttattggtaaaggaggagctattgtaactgagatgaggagactaactaaagctaatattcgcatactttcaaaagaaaatcttcccaaaattgcatctgaagatgatgaaatggtgcagatttctggagaccttgatattgccaaggaagctcttatacatgttgtgacgcgattgagggcaaaccttttcgacagggaaggtgcagtgtctgcattccttccaacagttctgccttatcttcctgtgggaggagatgcggcagatggtccaaattatgacagtagagatggtaaacgacatgggcgttatggtggttatggtggctcaagtgattttggagctaatgacagttatggaagttatggtggttcacaggttggtggtagcggcagtccctatggagcttatggagcttattcttctggacgtactggtagttctgggttatctagccagaaccctgtttctcggcggagaaactatggttactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

260

Amino Acids

27.5

Weight (kDa)

6.74

Isoelectric Point (pI)

47.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14170 AT1G14170 AT1G14170 AT2G03110 AT2G03110 AT2G03110 AT5G15270 AT5G15270 AT5G15270
fragaria_vesca	FvH4_6g48190 FvH4_6g48190 FvH4_6g48190 FvH4_6g48190 FvH4_6g48190 FvH4_6g48190 FvH4_6g48190
malus_domestica	MD00G1125600.v1.1 MD09G1053100.v1.1
prunus_persica	Prupe.3G265600_v2.0.a1
pyrus_communis	pycom111g04440 pycom17g04850
rosa_chinensis	RchiOBHm_Chr2g0167651
rosa_laevigata	RLG00000021744
rosa_multiflora	Rmu_co8465399.1_g000001 Rmu_sc0001970.1_g000014
rosa_roxburghii	Rroxscaffold_2G00083350
rosa_rugosa	Rorug02G0530800 Rorug02G0530800 Rorug02G0530900 Rorug02G0531000
rosa_samantha	Rh2AG600000 Rh2BG610500 Rh2CG580900 Rh2DG623200
rosa_wichuraiana	Rw2G049810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	258, 460
AciI	CCGC	4 cut(s)	256, 548, 678, 763
AclWI	GGATC	2 cut(s)	232, 245
AcuI	CTGAAG	2 cut(s)	132, 408
AfaI	GTAC	2 cut(s)	261, 721
AfiI	CCNNNNNNNGG	1 cut(s)	539
AflIII	ACRYGT	1 cut(s)	448
AgsI	TTSAA	2 cut(s)	224, 360
AluBI	AGCT	6 cut(s)	308, 341, 440, 632, 695, 704
AluI	AGCT	6 cut(s)	308, 341, 440, 632, 695, 704
Alw26I	GTCTC	2 cut(s)	322, 411
AlwI	GGATC	2 cut(s)	232, 245
AlwNI	CAGNNNCTG	1 cut(s)	500
ApeKI	GCWGC	3 cut(s)	83, 185, 285
AseI	ATTAAT	1 cut(s)	57
Asp700I	GAANNNNTTC	1 cut(s)	369
AspS9I	GGNCC	1 cut(s)	557
AsuII	TTCGAA	1 cut(s)	156
AvaII	GGWCC	1 cut(s)	557
BamHI	GGATCC	1 cut(s)	237
BarI	GAAGNNNNNNTAC	2 cut(s)	429, 461
BbvI	GCAGC	3 cut(s)	70, 197, 272
BccI	CCATC	2 cut(s)	548, 572
BcgI	CGANNNNNNTGC	2 cut(s)	267, 301
BcoDI	GTCTC	2 cut(s)	322, 411
BfaI	CTAG	2 cut(s)	741, 781
BisI	GCNGC	5 cut(s)	84, 186, 286, 549, 679
BlsI	GCNGC	5 cut(s)	85, 187, 287, 550, 680
Bme18I	GGWCC	1 cut(s)	557
BmgT120I	GGNCC	1 cut(s)	557
BmiI	GGNNCC	1 cut(s)	239
BmsI	GCATC	3 cut(s)	197, 392, 535
BpmI	CTGGAG	1 cut(s)	435
Bpu14I	TTCGAA	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	601
BsaI	GGTCTC	1 cut(s)	411
BsaJI	CCNNGG	1 cut(s)	432
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bsc4I	CCNNNNNNNGG	1 cut(s)	539
Bse1I	ACTGG	1 cut(s)	727
BseDI	CCNNGG	1 cut(s)	432
BseLI	CCNNNNNNNGG	1 cut(s)	539
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	1 cut(s)	727
BseRI	GAGGAG	3 cut(s)	318, 340, 555
BseXI	GCAGC	3 cut(s)	70, 197, 272
BsgI	GTGCAG	2 cut(s)	425, 513
Bsh1236I	CGCG	2 cut(s)	258, 460
BslFI	GGGAC	1 cut(s)	669
BslI	CCNNNNNNNGG	1 cut(s)	539
BsmAI	GTCTC	2 cut(s)	322, 411
BsmFI	GGGAC	1 cut(s)	669
BsmI	GAATGC	1 cut(s)	503
Bso31I	GGTCTC	1 cut(s)	411
Bsp119I	TTCGAA	1 cut(s)	156
Bsp143I	GATC	2 cut(s)	160, 237
BspACI	CCGC	4 cut(s)	256, 548, 678, 763
BspCNI	CTCAG	1 cut(s)	310
BspFNI	CGCG	2 cut(s)	258, 460
BspLI	GGNNCC	1 cut(s)	239
BspPI	GGATC	2 cut(s)	232, 245
BspT104I	TTCGAA	1 cut(s)	156
BspTNI	GGTCTC	1 cut(s)	411
BsrI	ACTGG	1 cut(s)	727
BssECI	CCNNGG	1 cut(s)	432
BssMI	GATC	2 cut(s)	160, 237
BssT1I	CCWWGG	1 cut(s)	432
Bst4CI	ACNGT	4 cut(s)	136, 517, 572, 641
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstBI	TTCGAA	1 cut(s)	156
BstDEI	CTNAG	1 cut(s)	318
BstENI	CCTNNNNNAGG	1 cut(s)	537
BstFNI	CGCG	2 cut(s)	258, 460
BstKTI	GATC	2 cut(s)	163, 240
BstMAI	GTCTC	2 cut(s)	322, 411
BstMBI	GATC	2 cut(s)	160, 237
BstMWI	GCNNNNNNNGC	3 cut(s)	437, 500, 701
BstNSI	RCATGY	1 cut(s)	452
BstUI	CGCG	2 cut(s)	258, 460
BstV1I	GCAGC	3 cut(s)	70, 197, 272
BstX2I	RGATCY	1 cut(s)	237
BstYI	RGATCY	1 cut(s)	237
BtsI	GCAGTG	3 cut(s)	195, 217, 501
BtsIMutI	CAGTG	3 cut(s)	195, 217, 501
CaiI	CAGNNNCTG	1 cut(s)	500
Cfr13I	GGNCC	1 cut(s)	557
CseI	GACGC	1 cut(s)	466
Csp6I	GTAC	2 cut(s)	260, 720
CviAII	CATG	2 cut(s)	449, 590
CviQI	GTAC	2 cut(s)	260, 720
DdeI	CTNAG	1 cut(s)	318
DpnI	GATC	2 cut(s)	162, 239
DpnII	GATC	2 cut(s)	160, 237
EciI	GGCGGA	1 cut(s)	778
Eco130I	CCWWGG	1 cut(s)	432
Eco31I	GGTCTC	1 cut(s)	411
Eco47I	GGWCC	1 cut(s)	557
Eco57I	CTGAAG	2 cut(s)	132, 408
EcoNI	CCTNNNNNAGG	1 cut(s)	537
EcoT14I	CCWWGG	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	432
FaeI	CATG	2 cut(s)	452, 593
FalI	AAGNNNNNCTT	4 cut(s)	137, 169, 354, 386
FaqI	GGGAC	1 cut(s)	669
FatI	CATG	2 cut(s)	448, 589
FauI	CCCGC	1 cut(s)	263
Fnu4HI	GCNGC	5 cut(s)	84, 186, 286, 549, 679
Fsp4HI	GCNGC	5 cut(s)	84, 186, 286, 549, 679
FspBI	CTAG	2 cut(s)	741, 781
GluI	GCNGC	5 cut(s)	84, 186, 286, 549, 679
GsuI	CTGGAG	1 cut(s)	435
HgaI	GACGC	1 cut(s)	466
Hin1II	CATG	2 cut(s)	452, 593
HinfI	GANTC	2 cut(s)	74, 230
Hpy166II	GTNNAC	4 cut(s)	104, 249, 584, 662
Hpy188I	TCNGA	3 cut(s)	68, 112, 388
Hpy188III	TCNNGA	3 cut(s)	276, 414, 714
Hpy8I	GTNNAC	4 cut(s)	104, 249, 584, 662
HpyAV	CCTTC	4 cut(s)	34, 107, 482, 518
HpyCH4III	ACNGT	4 cut(s)	136, 517, 572, 641
HpyCH4IV	ACGT	1 cut(s)	718
HpyCH4V	TGCA	8 cut(s)	17, 143, 199, 210, 383, 406, 494, 503
HpyF10VI	GCNNNNNNNGC	3 cut(s)	437, 500, 701
HpyF3I	CTNAG	1 cut(s)	318
HpySE526I	ACGT	1 cut(s)	718
Hsp92II	CATG	2 cut(s)	452, 593
Kzo9I	GATC	2 cut(s)	160, 237
LmnI	GCTCC	4 cut(s)	305, 629, 692, 701
Lsp1109I	GCAGC	3 cut(s)	70, 197, 272
LweI	GCATC	3 cut(s)	197, 392, 535
MaeI	CTAG	2 cut(s)	741, 781
MaeII	ACGT	1 cut(s)	718
MaeIII	GTNAC	4 cut(s)	136, 313, 454, 776
MalI	GATC	2 cut(s)	162, 239
MboI	GATC	2 cut(s)	160, 237
MboII	GAAGA	6 cut(s)	145, 170, 362, 401, 521, 702
MflI	RGATCY	1 cut(s)	237
MluCI	AATT	3 cut(s)	279, 378, 562
MmeI	TCCRAC	3 cut(s)	35, 293, 536
MnlI	CCTC	7 cut(s)	20, 251, 283, 296, 318, 459, 533
MroXI	GAANNNNTTC	1 cut(s)	369
MseI	TTAA	2 cut(s)	57, 128
Mva1269I	GAATGC	1 cut(s)	503
MvnI	CGCG	2 cut(s)	258, 460
MwoI	GCNNNNNNNGC	3 cut(s)	437, 500, 701
NdeII	GATC	2 cut(s)	160, 237
NlaIII	CATG	2 cut(s)	452, 593
NlaIV	GGNNCC	1 cut(s)	239
NmeAIII	GCCGAG	1 cut(s)	739
NmuCI	GTSAC	1 cut(s)	454
NspI	RCATGY	1 cut(s)	452
NspV	TTCGAA	1 cut(s)	156
PciI	ACATGT	1 cut(s)	448
PcsI	WCGNNNNNNNCGW	1 cut(s)	592
PctI	GAATGC	1 cut(s)	503
PdmI	GAANNNNTTC	1 cut(s)	369
PfeI	GAWTC	2 cut(s)	74, 230
PkrI	GCNGC	5 cut(s)	85, 187, 287, 550, 680
PscI	ACATGT	1 cut(s)	448
PshBI	ATTAAT	1 cut(s)	57
PspN4I	GGNNCC	1 cut(s)	239
PspPI	GGNCC	1 cut(s)	557
PsrI	GAACNNNNNNTAC	2 cut(s)	712, 744
PstNI	CAGNNNCTG	1 cut(s)	500
PsuI	RGATCY	1 cut(s)	237
RsaI	GTAC	2 cut(s)	261, 721
RsaNI	GTAC	2 cut(s)	260, 720
SaqAI	TTAA	2 cut(s)	57, 128
SatI	GCNGC	5 cut(s)	84, 186, 286, 549, 679
Sau3AI	GATC	2 cut(s)	160, 237
Sau96I	GGNCC	1 cut(s)	557
SfaNI	GCATC	3 cut(s)	197, 392, 535
SfuI	TTCGAA	1 cut(s)	156
SinI	GGWCC	1 cut(s)	557
SmlI	CTYRAG	1 cut(s)	616
SmoI	CTYRAG	1 cut(s)	616
Sse9I	AATT	3 cut(s)	279, 378, 562
SsiI	CCGC	4 cut(s)	256, 548, 678, 763
SspI	AATATT	2 cut(s)	22, 346
SspMI	CTAG	2 cut(s)	741, 781
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	4 cut(s)	136, 517, 572, 641
TaiI	ACGT	1 cut(s)	721
TaqI	TCGA	3 cut(s)	96, 156, 480
TasI	AATT	3 cut(s)	279, 378, 562
TauI	GCSGC	2 cut(s)	551, 681
TfiI	GAWTC	2 cut(s)	74, 230
Tru1I	TTAA	2 cut(s)	57, 128
Tru9I	TTAA	2 cut(s)	57, 128
TscAI	CASTG	3 cut(s)	195, 217, 501
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	3 cut(s)	83, 185, 285
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	1 cut(s)	411
TspRI	CASTG	3 cut(s)	195, 217, 501
VpaK11BI	GGWCC	1 cut(s)	557
VspI	ATTAAT	1 cut(s)	57
XagI	CCTNNNNNAGG	1 cut(s)	537
XceI	RCATGY	1 cut(s)	452
XmnI	GAANNNNTTC	1 cut(s)	369
XspI	CTAG	2 cut(s)	741, 781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.