AT1G14490

Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013067
Physical Location & Seq
Reverse (-)
4958445 .. 4959529
1085 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G14490.1

Sequence Viewer

Length: 621 bp
ATGGAAACCGTCGGGCGTCCACGTGGCAGACCTCGAGGTTCCAAAAACAAACCTAAAGCTCCAATCTTTGTCACCATTGACCCTCCTATGAGTCCTTACATCCTCGAAGTGCCATCCGGAAACGATGTCGTTGAAGCCCTAAACCGTTTCTGCCGCGGTAAAGCCATCGGCTTTTGCGTCCTCAGTGGCTCAGGCTCCGTTGCTGATGTCACTTTGCGTCAGCCTTCTCCGGCAGCTCCTGGCTCAACCATTACTTTCCACGGAAAGTTCGATCTTCTCTCTGTCTCCGCCACTTTCCTCCCTCCTCTACCTCCTACCTCCTTGTCCCCTCCCGTCTCCAATTTCTTCACCGTCTCTCTCGCCGGACCTCAGGGGAAAGTCATCGGTGGATTCGTCGCTGGTCCTCTCGTTGCCGCCGGAACTGTTTACTTCGTCGCCACTAGTTTCAAGAACCCTTCCTATCACCGGTTACCTGCTACGGAGGAAGAGCAAAGAAACTCGGCGGAAGGGGAAGAGGAGGGACAATCGCCGCCGGTCTCTGGAGGTGGTGGAGAGTCGATGTACGTGGGTGGCTCTGATGTCATTTGGGATCCCAACGCCAAAGCTCCATCGCCGTACTGA

Protein Analysis

206

Amino Acids

21.46

Weight (kDa)

6.73

Isoelectric Point (pI)

56.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 32 - 151 3.2e-19 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013067)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14490 AT1G14490 AT5G49700
fragaria_vesca FvH4_5g35490
malus_domestica MD08G1196300.v1.1 MD15G1384100.v1.1
prunus_persica Prupe.1G530300_v2.0.a1
pyrus_communis pycom08g16870
rosa_chinensis RchiOBHm_Chr7g0236871
rosa_laevigata RLG00000001054
rosa_multiflora Rmu_sc0002867.1_g000011
rosa_roxburghii Rroxscaffold_3G00224740
rosa_rugosa Rorug07G0300400
rosa_samantha Rh7AG455300 Rh7BG426500 Rh7CG474000 Rh7DG443300
rosa_wichuraiana Rw7G037800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 33
Acc36I ACCTGC 1 cut(s) 481
AccII CGCG 1 cut(s) 156
AccIII TCCGGA 1 cut(s) 116
AciI CCGC 6 cut(s) 154, 156, 288, 414, 503, 530
AclWI GGATC 2 cut(s) 584, 597
AcvI CACGTG 1 cut(s) 23
AcyI GRCGYC 1 cut(s) 16
AfaI GTAC 2 cut(s) 563, 617
AfiI CCNNNNNNNGG 2 cut(s) 465, 539
AgeI ACCGGT 1 cut(s) 465
AgsI TTSAA 2 cut(s) 134, 448
AhlI ACTAGT 1 cut(s) 440
AjnI CCWGG 1 cut(s) 238
AluBI AGCT 3 cut(s) 59, 236, 605
AluI AGCT 3 cut(s) 59, 236, 605
Alw26I GTCTC 4 cut(s) 289, 340, 358, 541
AlwI GGATC 2 cut(s) 584, 597
AlwNI CAGNNNCTG 1 cut(s) 239
Ama87I CYCGRG 1 cut(s) 33
Aor13HI TCCGGA 1 cut(s) 116
ApeKI GCWGC 1 cut(s) 233
AsiGI ACCGGT 1 cut(s) 465
AspS9I GGNCC 2 cut(s) 365, 401
AsuHPI GGTGA 3 cut(s) 64, 340, 455
AvaI CYCGRG 1 cut(s) 33
AvaII GGWCC 2 cut(s) 365, 401
AxyI CCTNAGG 1 cut(s) 369
BamHI GGATCC 1 cut(s) 589
BbrPI CACGTG 1 cut(s) 23
BbvI GCAGC 1 cut(s) 245
BccI CCATC 3 cut(s) 121, 173, 616
BceAI ACGGC 1 cut(s) 598
BciT130I CCWGG 1 cut(s) 240
BcoDI GTCTC 4 cut(s) 289, 340, 358, 541
BcuI ACTAGT 1 cut(s) 440
BfaI CTAG 1 cut(s) 441
BfuAI ACCTGC 1 cut(s) 481
BisI GCNGC 4 cut(s) 154, 234, 414, 530
BlsI GCNGC 4 cut(s) 155, 235, 415, 531
Bme1390I CCNGG 1 cut(s) 240
Bme18I GGWCC 2 cut(s) 365, 401
BmeT110I CYCGRG 1 cut(s) 33
BmgT120I GGNCC 2 cut(s) 365, 401
BmiI GGNNCC 3 cut(s) 40, 196, 591
BmrFI CCNGG 1 cut(s) 240
BpmI CTGGAG 1 cut(s) 561
Bpu10I CCTNAGC 1 cut(s) 190
BsaAI YACGTR 2 cut(s) 23, 565
BsaHI GRCGYC 1 cut(s) 16
BsaI GGTCTC 1 cut(s) 541
BsaJI CCNNGG 2 cut(s) 154, 259
BsaWI WCCGGW 2 cut(s) 116, 465
Bsc4I CCNNNNNNNGG 2 cut(s) 465, 539
Bse118I RCCGGY 2 cut(s) 465, 532
Bse21I CCTNAGG 1 cut(s) 369
BseAI TCCGGA 1 cut(s) 116
BseBI CCWGG 1 cut(s) 240
BseDI CCNNGG 2 cut(s) 154, 259
BseGI GGATG 2 cut(s) 99, 113
BseLI CCNNNNNNNGG 2 cut(s) 465, 539
BseMII CTCAG 3 cut(s) 196, 204, 383
BseRI GAGGAG 2 cut(s) 294, 530
BseXI GCAGC 1 cut(s) 245
Bsh1236I CGCG 1 cut(s) 156
BshTI ACCGGT 1 cut(s) 465
BsiHKCI CYCGRG 1 cut(s) 33
BsiSI CCGG 6 cut(s) 117, 230, 363, 417, 466, 533
BslFI GGGAC 2 cut(s) 310, 534
BslI CCNNNNNNNGG 2 cut(s) 465, 539
BsmAI GTCTC 4 cut(s) 289, 340, 358, 541
BsmBI CGTCTC 2 cut(s) 340, 358
BsmFI GGGAC 2 cut(s) 310, 534
Bso31I GGTCTC 1 cut(s) 541
BsoBI CYCGRG 1 cut(s) 33
Bsp13I TCCGGA 1 cut(s) 116
Bsp143I GATC 2 cut(s) 271, 589
BspACI CCGC 6 cut(s) 154, 156, 288, 414, 503, 530
BspCNI CTCAG 3 cut(s) 195, 203, 382
BspEI TCCGGA 1 cut(s) 116
BspFNI CGCG 1 cut(s) 156
BspLI GGNNCC 3 cut(s) 40, 196, 591
BspMI ACCTGC 1 cut(s) 481
BspPI GGATC 2 cut(s) 584, 597
BspQI GCTCTTC 1 cut(s) 480
BspTNI GGTCTC 1 cut(s) 541
BsrFI RCCGGY 2 cut(s) 465, 532
BssAI RCCGGY 2 cut(s) 465, 532
BssECI CCNNGG 2 cut(s) 154, 259
BssMI GATC 2 cut(s) 271, 589
BssNI GRCGYC 1 cut(s) 16
Bst2UI CCWGG 1 cut(s) 240
Bst4CI ACNGT 4 cut(s) 10, 146, 352, 424
Bst6I CTCTTC 2 cut(s) 480, 507
BstACI GRCGYC 1 cut(s) 16
BstBAI YACGTR 2 cut(s) 23, 565
BstDEI CTNAG 3 cut(s) 182, 190, 369
BstDSI CCRYGG 2 cut(s) 154, 259
BstEII GGTNACC 1 cut(s) 468
BstF5I GGATG 2 cut(s) 99, 113
BstFNI CGCG 1 cut(s) 156
BstKTI GATC 2 cut(s) 274, 592
BstMAI GTCTC 4 cut(s) 289, 340, 358, 541
BstMBI GATC 2 cut(s) 271, 589
BstNI CCWGG 1 cut(s) 240
BstPI GGTNACC 1 cut(s) 468
BstSCI CCNGG 1 cut(s) 238
BstUI CGCG 1 cut(s) 156
BstV1I GCAGC 1 cut(s) 245
BstX2I RGATCY 1 cut(s) 589
BstYI RGATCY 1 cut(s) 589
Bsu36I CCTNAGG 1 cut(s) 369
BtgI CCRYGG 2 cut(s) 154, 259
BtgZI GCGATG 1 cut(s) 594
BtsCI GGATG 2 cut(s) 99, 113
BtsIMutI CAGTG 1 cut(s) 190
BveI ACCTGC 1 cut(s) 481
CaiI CAGNNNCTG 1 cut(s) 239
Cfr10I RCCGGY 2 cut(s) 465, 532
Cfr13I GGNCC 2 cut(s) 365, 401
Cfr42I CCGCGG 1 cut(s) 157
CseI GACGC 3 cut(s) 5, 166, 206
Csp6I GTAC 2 cut(s) 562, 616
CspAI ACCGGT 1 cut(s) 465
CviQI GTAC 2 cut(s) 562, 616
DdeI CTNAG 3 cut(s) 182, 190, 369
DpnI GATC 2 cut(s) 273, 591
DpnII GATC 2 cut(s) 271, 589
Eam1104I CTCTTC 2 cut(s) 480, 507
EarI CTCTTC 2 cut(s) 480, 507
EciI GGCGGA 2 cut(s) 277, 518
Eco31I GGTCTC 1 cut(s) 541
Eco47I GGWCC 2 cut(s) 365, 401
Eco72I CACGTG 1 cut(s) 23
Eco81I CCTNAGG 1 cut(s) 369
Eco88I CYCGRG 1 cut(s) 33
Eco91I GGTNACC 1 cut(s) 468
EcoO65I GGTNACC 1 cut(s) 468
EcoRII CCWGG 1 cut(s) 238
Esp3I CGTCTC 2 cut(s) 340, 358
FaiI YATR 1 cut(s) 89
FaqI GGGAC 2 cut(s) 310, 534
Fnu4HI GCNGC 4 cut(s) 154, 234, 414, 530
FokI GGATG 2 cut(s) 86, 100
Fsp4HI GCNGC 4 cut(s) 154, 234, 414, 530
FspBI CTAG 1 cut(s) 441
GluI GCNGC 4 cut(s) 154, 234, 414, 530
GsuI CTGGAG 1 cut(s) 561
HapII CCGG 6 cut(s) 117, 230, 363, 417, 466, 533
HgaI GACGC 3 cut(s) 5, 166, 206
Hin1I GRCGYC 1 cut(s) 16
HinfI GANTC 3 cut(s) 91, 390, 554
HpaII CCGG 6 cut(s) 117, 230, 363, 417, 466, 533
HphI GGTGA 3 cut(s) 64, 340, 455
Hpy166II GTNNAC 2 cut(s) 20, 427
Hpy188I TCNGA 1 cut(s) 577
Hpy188III TCNNGA 3 cut(s) 117, 448, 540
Hpy8I GTNNAC 2 cut(s) 20, 427
Hpy99I CGWCG 3 cut(s) 14, 398, 437
HpyAV CCTTC 3 cut(s) 234, 465, 500
HpyCH4III ACNGT 4 cut(s) 10, 146, 352, 424
HpyCH4IV ACGT 2 cut(s) 22, 564
HpyF3I CTNAG 3 cut(s) 182, 190, 369
HpySE526I ACGT 2 cut(s) 22, 564
Hsp92I GRCGYC 1 cut(s) 16
Kpn2I TCCGGA 1 cut(s) 116
KspI CCGCGG 1 cut(s) 157
Kzo9I GATC 2 cut(s) 271, 589
LguI GCTCTTC 1 cut(s) 480
LmnI GCTCC 4 cut(s) 64, 200, 241, 610
Lsp1109I GCAGC 1 cut(s) 245
MaeI CTAG 1 cut(s) 441
MaeII ACGT 2 cut(s) 22, 564
MaeIII GTNAC 3 cut(s) 70, 208, 468
MalI GATC 2 cut(s) 273, 591
MboI GATC 2 cut(s) 271, 589
MboII GAAGA 4 cut(s) 266, 337, 497, 524
MflI RGATCY 1 cut(s) 589
MluCI AATT 1 cut(s) 340
MlyI GAGTC 2 cut(s) 100, 563
MroI TCCGGA 1 cut(s) 116
MspA1I CMGCKG 1 cut(s) 156
MspI CCGG 6 cut(s) 117, 230, 363, 417, 466, 533
MspR9I CCNGG 1 cut(s) 240
MvaI CCWGG 1 cut(s) 240
MvnI CGCG 1 cut(s) 156
NdeII GATC 2 cut(s) 271, 589
NlaIV GGNNCC 3 cut(s) 40, 196, 591
NmeAIII GCCGAG 1 cut(s) 479
NmuCI GTSAC 2 cut(s) 70, 208
PaeR7I CTCGAG 1 cut(s) 33
PciSI GCTCTTC 1 cut(s) 480
PcsI WCGNNNNNNNCGW 3 cut(s) 174, 267, 390
PfeI GAWTC 1 cut(s) 390
PinAI ACCGGT 1 cut(s) 465
PkrI GCNGC 4 cut(s) 155, 235, 415, 531
PleI GAGTC 2 cut(s) 99, 562
PmaCI CACGTG 1 cut(s) 23
PmlI CACGTG 1 cut(s) 23
PpsI GAGTC 2 cut(s) 99, 562
Ppu21I YACGTR 2 cut(s) 23, 565
Psp6I CCWGG 1 cut(s) 238
PspCI CACGTG 1 cut(s) 23
PspEI GGTNACC 1 cut(s) 468
PspGI CCWGG 1 cut(s) 238
PspN4I GGNNCC 3 cut(s) 40, 196, 591
PspPI GGNCC 2 cut(s) 365, 401
PspXI VCTCGAGB 1 cut(s) 33
PstNI CAGNNNCTG 1 cut(s) 239
PsuI RGATCY 1 cut(s) 589
RsaI GTAC 2 cut(s) 563, 617
RsaNI GTAC 2 cut(s) 562, 616
SacII CCGCGG 1 cut(s) 157
SapI GCTCTTC 1 cut(s) 480
SatI GCNGC 4 cut(s) 154, 234, 414, 530
Sau3AI GATC 2 cut(s) 271, 589
Sau96I GGNCC 2 cut(s) 365, 401
SchI GAGTC 2 cut(s) 100, 563
ScrFI CCNGG 1 cut(s) 240
Sfr274I CTCGAG 1 cut(s) 33
Sfr303I CCGCGG 1 cut(s) 157
SgrBI CCGCGG 1 cut(s) 157
SinI GGWCC 2 cut(s) 365, 401
SlaI CTCGAG 1 cut(s) 33
SmlI CTYRAG 1 cut(s) 33
SmoI CTYRAG 1 cut(s) 33
SpeI ACTAGT 1 cut(s) 440
Sse9I AATT 1 cut(s) 340
SsiI CCGC 6 cut(s) 154, 156, 288, 414, 503, 530
SspMI CTAG 1 cut(s) 441
StyD4I CCNGG 1 cut(s) 238
TaaI ACNGT 4 cut(s) 10, 146, 352, 424
TaiI ACGT 2 cut(s) 25, 567
TaqI TCGA 4 cut(s) 34, 105, 270, 557
TasI AATT 1 cut(s) 340
TauI GCSGC 3 cut(s) 156, 416, 532
TfiI GAWTC 1 cut(s) 390
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 2 cut(s) 70, 208
TseI GCWGC 1 cut(s) 233
Tsp45I GTSAC 2 cut(s) 70, 208
TspGWI ACGGA 3 cut(s) 187, 276, 494
TspRI CASTG 1 cut(s) 190
VpaK11BI GGWCC 2 cut(s) 365, 401
XhoI CTCGAG 1 cut(s) 33
XspI CTAG 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.