Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0013067

Physical Location & Seq

Genomic Coordinates Forward (+)

62523693 .. 62525358

Gene Structure 1666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG455300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGAAAGGTGAATACGGAGGTGGTGACACCAAGAGTGAAACCCAAAACATGTTCTCGAAGCTTCACCATCATAACAACCCACAATCTCATCCTCACCCTCACCCTCACCACCCCCAGCAGCAGCAGCAGCAGCAGTTCCACCACCATTTCTCCAACCCATTTCAGATTACGCCAGTCCGCGAATGTCAGCCTCAAACTTCTGAAGAAGAAGACACCAGCCGAACCAGCAGCGGCACCGCCACCAAGCCCCTCGTTTCAGATCCCAACAACCCCACCGGCGGCGACGGCGCCACTATTGAAGTCGTCCGGAGGCCCAGGGGCCGCCCTCCCGGCTCCAAGAACAAGCCCAAGCCTCCCGTCATCATAACCCGCGACACCGAGCCCGCCATGAGCCCTTACATTCTTGAAGTCCCCGGCGGAAGCGACGTCGTCGACGCCGTCTCCCGATTCTGCTGCCGCAAGAACATCGGCCTCGTCATCCTCACCGGCTCCGGAACCGTCGCCAACGTTACTCTACGTCAGCCGTCCACTACTCCAGGAGCTACTGTTACCTTCCACGGCCGCTTCGACATCCTCTCGATCTCCGCCACCTTCCTTCCTCAATCGACGGCGGCCGGCCCGATCCCCAACGGCTTTACCATCTCCCTCGCCGGACCGCAGGGCCAGATCGTCGGAGGACTCGTCGCCGGGGCCTTGATAGCTGCCGGAACTGTTTACATCATCGCGGCGTCGTTCAACAGCCCTTCGTACCATCGGCTGCCGGTGGAGGACGAGGCGGCGCCCAGGAACTCGGTGTCGGGAGGGGAAGCTCAGTCGCCGCCTCTTTCGACTGGCGGGGAGAGTGGGGGTCACGCGCCGGCACAGTCTTGTGGGATGGCCATGTACAGCTGTCACTTGCCTACCGATGTTATCTGGGCTCCGACTGCAAGACAACCACCTCCTCCGCCACCCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

318

Amino Acids

33.58

Weight (kDa)

6.94

Isoelectric Point (pI)

61.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCC	PF03479	132 - 246	7.8e-20	Plants and Prokaryotes Conserved (PCC) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14490 AT1G14490 AT5G49700
fragaria_vesca	FvH4_5g35490
malus_domestica	MD08G1196300.v1.1 MD15G1384100.v1.1
prunus_persica	Prupe.1G530300_v2.0.a1
pyrus_communis	pycom08g16870
rosa_chinensis	RchiOBHm_Chr7g0236871
rosa_laevigata	RLG00000001054
rosa_multiflora	Rmu_sc0002867.1_g000011
rosa_roxburghii	Rroxscaffold_3G00224740
rosa_rugosa	Rorug07G0300400
rosa_samantha	Rh7AG455300 Rh7BG426500 Rh7CG474000 Rh7DG443300
rosa_wichuraiana	Rw7G037800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	429
AccB1I	GGYRCC	3 cut(s)	233, 287, 778
AccI	GTMKAC	1 cut(s)	432
AccII	CGCG	4 cut(s)	180, 372, 725, 854
AccIII	TCCGGA	2 cut(s)	306, 491
AclI	AACGTT	1 cut(s)	507
AclWI	GGATC	2 cut(s)	254, 616
AcoI	YGGCCR	3 cut(s)	559, 612, 876
AcuI	CTGAAG	1 cut(s)	222
AcyI	GRCGYC	5 cut(s)	288, 426, 435, 728, 779
AfaI	GTAC	2 cut(s)	749, 884
AfiI	CCNNNNNNNGG	1 cut(s)	278
AflIII	ACRYGT	1 cut(s)	48
AgsI	TTSAA	3 cut(s)	299, 407, 736
AjnI	CCWGG	3 cut(s)	314, 535, 782
AluBI	AGCT	5 cut(s)	61, 542, 701, 809, 888
AluI	AGCT	5 cut(s)	61, 542, 701, 809, 888
Alw26I	GTCTC	1 cut(s)	445
AlwI	GGATC	2 cut(s)	254, 616
Aor13HI	TCCGGA	2 cut(s)	306, 491
AoxI	GGCC	9 cut(s)	311, 319, 469, 559, 612, 616, 661, 690, 876
ApeKI	GCWGC	9 cut(s)	118, 121, 124, 127, 130, 228, 453, 701, 757
AspLEI	GCGC	3 cut(s)	290, 781, 856
AspS9I	GGNCC	6 cut(s)	312, 319, 617, 653, 661, 690
AsuC2I	CCSGG	3 cut(s)	330, 414, 688
AsuHPI	GGTGA	7 cut(s)	20, 35, 56, 86, 92, 98, 475
AvaII	GGWCC	1 cut(s)	653
BalI	TGGCCA	1 cut(s)	878
BanI	GGYRCC	3 cut(s)	233, 287, 778
BanII	GRGCYC	3 cut(s)	384, 395, 919
BbsI	GAAGAC	1 cut(s)	216
BbvI	GCAGC	9 cut(s)	130, 133, 136, 139, 142, 240, 440, 688, 744
BccI	CCATC	4 cut(s)	75, 647, 759, 868
BceAI	ACGGC	6 cut(s)	301, 422, 508, 574, 624, 646
BcgI	CGANNNNNNTGC	4 cut(s)	435, 448, 469, 482
BciT130I	CCWGG	3 cut(s)	316, 537, 784
BcnI	CCSGG	3 cut(s)	330, 414, 688
BcoDI	GTCTC	1 cut(s)	445
BfoI	RGCGCY	2 cut(s)	291, 782
BglI	GCCNNNNNGGC	1 cut(s)	330
Bme1390I	CCNGG	6 cut(s)	316, 330, 414, 537, 688, 784
Bme18I	GGWCC	1 cut(s)	653
BmgT120I	GGNCC	6 cut(s)	312, 319, 617, 653, 661, 690
BmiI	GGNNCC	9 cut(s)	235, 289, 320, 334, 490, 496, 691, 780, 918
BmrFI	CCNGG	6 cut(s)	316, 330, 414, 537, 688, 784
BpiI	GAAGAC	1 cut(s)	216
BpmI	CTGGAG	1 cut(s)	519
BpuMI	CCSGG	3 cut(s)	330, 414, 688
BsaHI	GRCGYC	5 cut(s)	288, 426, 435, 728, 779
BsaJI	CCNNGG	6 cut(s)	314, 315, 412, 556, 687, 782
BsaWI	WCCGGW	2 cut(s)	306, 491
BsaXI	ACNNNNNCTCC	8 cut(s)	134, 164, 425, 455, 531, 561, 666, 696
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
Bse118I	RCCGGY	5 cut(s)	275, 485, 614, 760, 856
Bse1I	ACTGG	2 cut(s)	173, 835
BseAI	TCCGGA	2 cut(s)	306, 491
BseBI	CCWGG	3 cut(s)	316, 537, 784
BseDI	CCNNGG	6 cut(s)	314, 315, 412, 556, 687, 782
BseGI	GGATG	4 cut(s)	88, 477, 570, 879
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseMII	CTCAG	1 cut(s)	824
BseNI	ACTGG	2 cut(s)	173, 835
BseRI	GAGGAG	1 cut(s)	930
BseX3I	CGGCCG	2 cut(s)	559, 612
BseXI	GCAGC	9 cut(s)	130, 133, 136, 139, 142, 240, 440, 688, 744
BseYI	CCCAGC	1 cut(s)	114
Bsh1236I	CGCG	4 cut(s)	180, 372, 725, 854
Bsh1285I	CGRYCG	2 cut(s)	562, 615
BshFI	GGCC	9 cut(s)	313, 321, 471, 561, 614, 618, 663, 692, 878
BshNI	GGYRCC	3 cut(s)	233, 287, 778
BsiEI	CGRYCG	2 cut(s)	562, 615
BslFI	GGGAC	1 cut(s)	395
BslI	CCNNNNNNNGG	1 cut(s)	278
BsmAI	GTCTC	1 cut(s)	445
BsmBI	CGTCTC	1 cut(s)	445
BsmFI	GGGAC	1 cut(s)	395
BsnI	GGCC	9 cut(s)	313, 321, 471, 561, 614, 618, 663, 692, 878
Bsp1286I	GDGCHC	3 cut(s)	384, 395, 919
Bsp13I	TCCGGA	2 cut(s)	306, 491
Bsp1407I	TGTACA	1 cut(s)	882
Bsp143I	GATC	4 cut(s)	259, 579, 621, 666
BspANI	GGCC	9 cut(s)	313, 321, 471, 561, 614, 618, 663, 692, 878
BspCNI	CTCAG	1 cut(s)	823
BspEI	TCCGGA	2 cut(s)	306, 491
BspFNI	CGCG	4 cut(s)	180, 372, 725, 854
BspLI	GGNNCC	9 cut(s)	235, 289, 320, 334, 490, 496, 691, 780, 918
BspPI	GGATC	2 cut(s)	254, 616
BspT107I	GGYRCC	3 cut(s)	233, 287, 778
BsrFI	RCCGGY	5 cut(s)	275, 485, 614, 760, 856
BsrGI	TGTACA	1 cut(s)	882
BsrI	ACTGG	2 cut(s)	173, 835
BssAI	RCCGGY	5 cut(s)	275, 485, 614, 760, 856
BssECI	CCNNGG	6 cut(s)	314, 315, 412, 556, 687, 782
BssMI	GATC	4 cut(s)	259, 579, 621, 666
BssNI	GRCGYC	5 cut(s)	288, 426, 435, 728, 779
Bst2UI	CCWGG	3 cut(s)	316, 537, 784
Bst4CI	ACNGT	4 cut(s)	499, 547, 712, 864
BstACI	GRCGYC	5 cut(s)	288, 426, 435, 728, 779
BstAUI	TGTACA	1 cut(s)	882
BstC8I	GCNNGC	3 cut(s)	384, 616, 858
BstDEI	CTNAG	1 cut(s)	810
BstDSI	CCRYGG	1 cut(s)	556
BstF5I	GGATG	4 cut(s)	88, 477, 570, 879
BstFNI	CGCG	4 cut(s)	180, 372, 725, 854
BstH2I	RGCGCY	2 cut(s)	291, 782
BstHHI	GCGC	3 cut(s)	290, 781, 856
BstKTI	GATC	4 cut(s)	262, 582, 624, 669
BstMAI	GTCTC	1 cut(s)	445
BstMBI	GATC	4 cut(s)	259, 579, 621, 666
BstMCI	CGRYCG	2 cut(s)	562, 615
BstMWI	GCNNNNNNNGC	8 cut(s)	124, 127, 130, 225, 285, 330, 698, 923
BstNI	CCWGG	3 cut(s)	316, 537, 784
BstNSI	RCATGY	1 cut(s)	52
BstSCI	CCNGG	6 cut(s)	314, 328, 412, 535, 686, 782
BstUI	CGCG	4 cut(s)	180, 372, 725, 854
BstV1I	GCAGC	9 cut(s)	130, 133, 136, 139, 142, 240, 440, 688, 744
BstV2I	GAAGAC	1 cut(s)	216
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
BstZI	CGGCCG	2 cut(s)	559, 612
BsuRI	GGCC	9 cut(s)	313, 321, 471, 561, 614, 618, 663, 692, 878
BtgI	CCRYGG	1 cut(s)	556
BtgZI	GCGATG	1 cut(s)	706
BtsCI	GGATG	4 cut(s)	88, 477, 570, 879
Cac8I	GCNNGC	3 cut(s)	384, 616, 858
CfoI	GCGC	3 cut(s)	290, 781, 856
Cfr10I	RCCGGY	5 cut(s)	275, 485, 614, 760, 856
Cfr13I	GGNCC	6 cut(s)	312, 319, 617, 653, 661, 690
CpoI	CGGWCCG	1 cut(s)	653
CseI	GACGC	2 cut(s)	443, 717
Csp6I	GTAC	2 cut(s)	748, 883
CspI	CGGWCCG	1 cut(s)	653
CviAII	CATG	3 cut(s)	49, 388, 880
CviQI	GTAC	2 cut(s)	748, 883
DdeI	CTNAG	1 cut(s)	810
DinI	GGCGCC	2 cut(s)	289, 780
DpnI	GATC	4 cut(s)	261, 581, 623, 668
DpnII	GATC	4 cut(s)	259, 579, 621, 666
EaeI	YGGCCR	3 cut(s)	559, 612, 876
EagI	CGGCCG	2 cut(s)	559, 612
EciI	GGCGGA	3 cut(s)	432, 574, 933
EclXI	CGGCCG	2 cut(s)	559, 612
Eco24I	GRGCYC	3 cut(s)	384, 395, 919
Eco47I	GGWCC	1 cut(s)	653
Eco52I	CGGCCG	2 cut(s)	559, 612
Eco57I	CTGAAG	1 cut(s)	222
EcoO109I	RGGNCCY	1 cut(s)	690
EcoRII	CCWGG	3 cut(s)	314, 535, 782
EcoT38I	GRGCYC	3 cut(s)	384, 395, 919
EgeI	GGCGCC	2 cut(s)	289, 780
EheI	GGCGCC	2 cut(s)	289, 780
Esp3I	CGTCTC	1 cut(s)	445
FaeI	CATG	3 cut(s)	52, 391, 883
FaiI	YATR	5 cut(s)	50, 72, 365, 389, 881
FaqI	GGGAC	1 cut(s)	395
FatI	CATG	3 cut(s)	48, 387, 879
FauI	CCCGC	3 cut(s)	377, 391, 827
FblI	GTMKAC	1 cut(s)	432
FokI	GGATG	4 cut(s)	75, 464, 557, 886
FriOI	GRGCYC	3 cut(s)	384, 395, 919
FseI	GGCCGGCC	1 cut(s)	618
GlaI	GCGC	3 cut(s)	289, 780, 855
GsaI	CCCAGC	1 cut(s)	118
GsuI	CTGGAG	1 cut(s)	519
HaeII	RGCGCY	2 cut(s)	291, 782
HaeIII	GGCC	9 cut(s)	313, 321, 471, 561, 614, 618, 663, 692, 878
HgaI	GACGC	2 cut(s)	443, 717
HhaI	GCGC	3 cut(s)	290, 781, 856
Hin1I	GRCGYC	5 cut(s)	288, 426, 435, 728, 779
Hin1II	CATG	3 cut(s)	52, 391, 883
Hin6I	GCGC	3 cut(s)	288, 779, 854
HinP1I	GCGC	3 cut(s)	288, 779, 854
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HindIII	AAGCTT	1 cut(s)	59
HinfI	GANTC	2 cut(s)	447, 678
HphI	GGTGA	7 cut(s)	20, 35, 56, 86, 92, 98, 475
Hpy166II	GTNNAC	3 cut(s)	433, 528, 715
Hpy188I	TCNGA	5 cut(s)	165, 202, 259, 674, 921
Hpy188III	TCNNGA	7 cut(s)	55, 307, 404, 444, 492, 577, 798
Hpy8I	GTNNAC	3 cut(s)	433, 528, 715
HpyAV	CCTTC	4 cut(s)	562, 601, 605, 753
HpyCH4III	ACNGT	4 cut(s)	499, 547, 712, 864
HpyCH4IV	ACGT	3 cut(s)	426, 507, 517
HpyCH4V	TGCA	1 cut(s)	926
HpyF10VI	GCNNNNNNNGC	8 cut(s)	124, 127, 130, 225, 285, 330, 698, 923
HpyF3I	CTNAG	1 cut(s)	810
HpySE526I	ACGT	3 cut(s)	426, 507, 517
Hsp92I	GRCGYC	5 cut(s)	288, 426, 435, 728, 779
Hsp92II	CATG	3 cut(s)	52, 391, 883
HspAI	GCGC	3 cut(s)	288, 779, 854
KasI	GGCGCC	2 cut(s)	287, 778
Kpn2I	TCCGGA	2 cut(s)	306, 491
KroI	GCCGGC	2 cut(s)	614, 856
KroNI	GCCGGC	2 cut(s)	616, 858
Kzo9I	GATC	4 cut(s)	259, 579, 621, 666
LmnI	GCTCC	4 cut(s)	338, 494, 539, 922
Lsp1109I	GCAGC	9 cut(s)	130, 133, 136, 139, 142, 240, 440, 688, 744
MaeII	ACGT	3 cut(s)	426, 507, 517
MaeIII	GTNAC	5 cut(s)	23, 508, 547, 848, 890
MalI	GATC	4 cut(s)	261, 581, 623, 668
MboI	GATC	4 cut(s)	259, 579, 621, 666
MboII	GAAGA	3 cut(s)	215, 218, 221
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	3 cut(s)	384, 395, 919
MlsI	TGGCCA	1 cut(s)	878
MluNI	TGGCCA	1 cut(s)	878
Mly113I	GGCGCC	2 cut(s)	288, 779
MlyI	GAGTC	1 cut(s)	672
MmeI	TCCRAC	3 cut(s)	177, 652, 944
Mox20I	TGGCCA	1 cut(s)	878
MroI	TCCGGA	2 cut(s)	306, 491
MroNI	GCCGGC	2 cut(s)	614, 856
MscI	TGGCCA	1 cut(s)	878
Msp20I	TGGCCA	1 cut(s)	878
MspA1I	CMGCKG	2 cut(s)	231, 888
MspR9I	CCNGG	6 cut(s)	316, 330, 414, 537, 688, 784
MvaI	CCWGG	3 cut(s)	316, 537, 784
MvnI	CGCG	4 cut(s)	180, 372, 725, 854
MwoI	GCNNNNNNNGC	8 cut(s)	124, 127, 130, 225, 285, 330, 698, 923
NaeI	GCCGGC	2 cut(s)	616, 858
NarI	GGCGCC	2 cut(s)	288, 779
NciI	CCSGG	3 cut(s)	330, 414, 688
NdeII	GATC	4 cut(s)	259, 579, 621, 666
NgoMIV	GCCGGC	2 cut(s)	614, 856
NlaIII	CATG	3 cut(s)	52, 391, 883
NlaIV	GGNNCC	9 cut(s)	235, 289, 320, 334, 490, 496, 691, 780, 918
NmuCI	GTSAC	3 cut(s)	23, 848, 890
NspI	RCATGY	1 cut(s)	52
PasI	CCCWGGG	1 cut(s)	315
PciI	ACATGT	1 cut(s)	48
PcsI	WCGNNNNNNNCGW	3 cut(s)	435, 564, 678
PdiI	GCCGGC	2 cut(s)	616, 858
PfeI	GAWTC	1 cut(s)	447
PflFI	GACNNNGTC	2 cut(s)	428, 437
PfoI	TCCNGGA	1 cut(s)	535
PleI	GAGTC	1 cut(s)	672
PluTI	GGCGCC	2 cut(s)	291, 782
PpsI	GAGTC	1 cut(s)	672
PscI	ACATGT	1 cut(s)	48
Psp1406I	AACGTT	1 cut(s)	507
Psp6I	CCWGG	3 cut(s)	314, 535, 782
PspFI	CCCAGC	1 cut(s)	114
PspGI	CCWGG	3 cut(s)	314, 535, 782
PspN4I	GGNNCC	9 cut(s)	235, 289, 320, 334, 490, 496, 691, 780, 918
PspPI	GGNCC	6 cut(s)	312, 319, 617, 653, 661, 690
PsuI	RGATCY	1 cut(s)	259
PsyI	GACNNNGTC	2 cut(s)	428, 437
PvuII	CAGCTG	1 cut(s)	888
RigI	GGCCGGCC	1 cut(s)	618
RsaI	GTAC	2 cut(s)	749, 884
RsaNI	GTAC	2 cut(s)	748, 883
Rsr2I	CGGWCCG	1 cut(s)	653
RsrII	CGGWCCG	1 cut(s)	653
SalI	GTCGAC	1 cut(s)	431
Sau3AI	GATC	4 cut(s)	259, 579, 621, 666
Sau96I	GGNCC	6 cut(s)	312, 319, 617, 653, 661, 690
SchI	GAGTC	1 cut(s)	672
ScrFI	CCNGG	6 cut(s)	316, 330, 414, 537, 688, 784
SduI	GDGCHC	3 cut(s)	384, 395, 919
SfoI	GGCGCC	2 cut(s)	289, 780
SgrAI	CRCCGGYG	1 cut(s)	275
SgrDI	CGTCGACG	1 cut(s)	431
SinI	GGWCC	1 cut(s)	653
SspDI	GGCGCC	2 cut(s)	287, 778
StyD4I	CCNGG	6 cut(s)	314, 328, 412, 535, 686, 782
TaaI	ACNGT	4 cut(s)	499, 547, 712, 864
TaiI	ACGT	3 cut(s)	429, 510, 520
TaqI	TCGA	6 cut(s)	56, 432, 567, 578, 605, 827
TatI	WGTACW	1 cut(s)	882
TauI	GCSGC	9 cut(s)	234, 282, 324, 459, 564, 614, 728, 779, 820
TfiI	GAWTC	1 cut(s)	447
TseFI	GTSAC	3 cut(s)	23, 848, 890
TseI	GCWGC	9 cut(s)	118, 121, 124, 127, 130, 228, 453, 701, 757
Tsp45I	GTSAC	3 cut(s)	23, 848, 890
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	30
Tth111I	GACNNNGTC	2 cut(s)	428, 437
VpaK11BI	GGWCC	1 cut(s)	653
XceI	RCATGY	1 cut(s)	52
XmiI	GTMKAC	1 cut(s)	432
ZraI	GACGTC	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.