Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0013067

Physical Location & Seq

Genomic Coordinates Reverse (-)

9866636 .. 9867586

Gene Structure 951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001054

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGAAAGGTGAATACGCAGGTGGTGACACCAAGAGTGAAACCCAAAACATGTTCTCGAAGCTTCACCATCATAACAACCCACAATCTCATCCTCACCCTCACCCTCACCACCCCCAGCAGCAGCAGCAGTTCCACCACCATTTCTCCAACCCATTTCAGATTACCCCAGTCCGCGAATGTCAGCCTCAAACTTCTGAAGAAGAAGACACCAGCCGAACCAGCAGCGGCACAGCCACCAAGCCGCTCGTTTCAGATCCCAACAACCCCACCGGCGGCGATGGCGCCACTATTGAAGTCGTCCGGAGGCCCAGGGGCCGCCCTCCCGGCTCCAAGAACAAGCCCAAGCCTCCCGTCATCATAACCCGCGACACCGAGCCCGCCATGAGCCCTTACATTCTTGAAGTCCCCGGCGGAAGCGACGTCGTCGAAGCCGTCTCCCGATTCTGCTGCCGCAAGAACATCGGCCTCGTCATCCTCACCGGCTCCGGAACCGTCGCCAACGTCACTCTACGTCAGCCGTCGACTACACCCGGAGCTACTGTTACCTTCCACGGCAGGTTCGACATACTCTCGATCTCCGCCACGTTCCTTCCGCAGACGACGGCGTCGGGTCCGATCCCGAACGGCTTCACCATCTCCCTCGCCGGACCGCAGGGCCAGATCGTCGGAGGACTAGTCGCCGGGGCCTTGATAGCTGCCGGAACTGTTTACATCATCGCGGCGTCGTTCAACAGCCCTTCGTACCATCGGCTGCCGGTGGAGGACGAGGCGGCGCCCAGGAACTCGGTGTCGGGAGGGGAAGCTCATTCGCCGCCTCTTTCGACTGGCGGGGAGAGTGGGGGTCACGCGCCGGCACAGTCTTGTGGGATGGCCATGTACAGCTGTCACTTGCCTACCGATGTTATCTGGGCTCCGACTGCAAGACAACCACCTCCTCCGCCACCCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

317

Amino Acids

33.39

Weight (kDa)

6.97

Isoelectric Point (pI)

58.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCC	PF03479	130 - 244	4.4e-20	Plants and Prokaryotes Conserved (PCC) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14490 AT1G14490 AT5G49700
fragaria_vesca	FvH4_5g35490
malus_domestica	MD08G1196300.v1.1 MD15G1384100.v1.1
prunus_persica	Prupe.1G530300_v2.0.a1
pyrus_communis	pycom08g16870
rosa_chinensis	RchiOBHm_Chr7g0236871
rosa_laevigata	RLG00000001054
rosa_multiflora	Rmu_sc0002867.1_g000011
rosa_roxburghii	Rroxscaffold_3G00224740
rosa_rugosa	Rorug07G0300400
rosa_samantha	Rh7AG455300 Rh7BG426500 Rh7CG474000 Rh7DG443300
rosa_wichuraiana	Rw7G037800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	8
AasI	GACNNNNNNGTC	1 cut(s)	604
AatII	GACGTC	1 cut(s)	423
Acc36I	ACCTGC	2 cut(s)	8, 546
AccB1I	GGYRCC	2 cut(s)	281, 772
AccBSI	CCGCTC	1 cut(s)	244
AccI	GTMKAC	1 cut(s)	521
AccII	CGCG	4 cut(s)	174, 366, 719, 848
AccIII	TCCGGA	2 cut(s)	300, 485
AclWI	GGATC	2 cut(s)	248, 610
AcoI	YGGCCR	1 cut(s)	870
AcuI	CTGAAG	1 cut(s)	216
AcyI	GRCGYC	5 cut(s)	282, 420, 605, 722, 773
AfaI	GTAC	2 cut(s)	743, 878
AfiI	CCNNNNNNNGG	1 cut(s)	272
AflIII	ACRYGT	1 cut(s)	48
AgsI	TTSAA	3 cut(s)	293, 401, 730
AhlI	ACTAGT	1 cut(s)	673
AjnI	CCWGG	2 cut(s)	308, 776
AluBI	AGCT	5 cut(s)	61, 536, 695, 803, 882
AluI	AGCT	5 cut(s)	61, 536, 695, 803, 882
Alw26I	GTCTC	1 cut(s)	439
AlwI	GGATC	2 cut(s)	248, 610
Aor13HI	TCCGGA	2 cut(s)	300, 485
AoxI	GGCC	6 cut(s)	305, 313, 463, 655, 684, 870
ApeKI	GCWGC	7 cut(s)	118, 121, 124, 222, 447, 695, 751
Asp700I	GAANNNNTTC	1 cut(s)	626
AspLEI	GCGC	3 cut(s)	284, 775, 850
AspS9I	GGNCC	6 cut(s)	306, 313, 611, 647, 655, 684
AsuC2I	CCSGG	4 cut(s)	324, 408, 531, 682
AsuHPI	GGTGA	8 cut(s)	20, 35, 56, 86, 92, 98, 469, 622
AvaII	GGWCC	2 cut(s)	611, 647
BalI	TGGCCA	1 cut(s)	872
BanI	GGYRCC	2 cut(s)	281, 772
BanII	GRGCYC	3 cut(s)	378, 389, 913
BbsI	GAAGAC	1 cut(s)	210
BbvI	GCAGC	7 cut(s)	130, 133, 136, 234, 434, 682, 738
BccI	CCATC	5 cut(s)	75, 272, 641, 753, 862
BceAI	ACGGC	5 cut(s)	416, 502, 568, 618, 640
BcgI	CGANNNNNNTGC	4 cut(s)	429, 442, 463, 476
BciT130I	CCWGG	2 cut(s)	310, 778
BcnI	CCSGG	4 cut(s)	324, 408, 531, 682
BcoDI	GTCTC	1 cut(s)	439
BcuI	ACTAGT	1 cut(s)	673
BfaI	CTAG	1 cut(s)	674
BfoI	RGCGCY	2 cut(s)	285, 776
BfuAI	ACCTGC	2 cut(s)	8, 546
BglI	GCCNNNNNGGC	1 cut(s)	324
Bme1390I	CCNGG	6 cut(s)	310, 324, 408, 531, 682, 778
Bme18I	GGWCC	2 cut(s)	611, 647
BmgT120I	GGNCC	6 cut(s)	306, 313, 611, 647, 655, 684
BmiI	GGNNCC	9 cut(s)	283, 314, 328, 484, 490, 612, 685, 774, 912
BmrFI	CCNGG	6 cut(s)	310, 324, 408, 531, 682, 778
BmrI	ACTGGG	1 cut(s)	161
BmuI	ACTGGG	1 cut(s)	161
BpiI	GAAGAC	1 cut(s)	210
BpuMI	CCSGG	4 cut(s)	324, 408, 531, 682
BsaHI	GRCGYC	5 cut(s)	282, 420, 605, 722, 773
BsaJI	CCNNGG	6 cut(s)	308, 309, 406, 550, 681, 776
BsaWI	WCCGGW	2 cut(s)	300, 485
BsaXI	ACNNNNNCTCC	6 cut(s)	128, 158, 525, 555, 660, 690
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse118I	RCCGGY	4 cut(s)	269, 479, 754, 850
Bse1I	ACTGG	2 cut(s)	167, 829
BseAI	TCCGGA	2 cut(s)	300, 485
BseBI	CCWGG	2 cut(s)	310, 778
BseDI	CCNNGG	6 cut(s)	308, 309, 406, 550, 681, 776
BseGI	GGATG	3 cut(s)	88, 471, 873
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseNI	ACTGG	2 cut(s)	167, 829
BseRI	GAGGAG	1 cut(s)	924
BseXI	GCAGC	7 cut(s)	130, 133, 136, 234, 434, 682, 738
BseYI	CCCAGC	1 cut(s)	114
Bsh1236I	CGCG	4 cut(s)	174, 366, 719, 848
BshFI	GGCC	6 cut(s)	307, 315, 465, 657, 686, 872
BshNI	GGYRCC	2 cut(s)	281, 772
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmAI	GTCTC	1 cut(s)	439
BsmBI	CGTCTC	1 cut(s)	439
BsmFI	GGGAC	1 cut(s)	389
BsnI	GGCC	6 cut(s)	307, 315, 465, 657, 686, 872
Bsp1286I	GDGCHC	3 cut(s)	378, 389, 913
Bsp13I	TCCGGA	2 cut(s)	300, 485
Bsp1407I	TGTACA	1 cut(s)	876
Bsp143I	GATC	4 cut(s)	253, 573, 615, 660
BspANI	GGCC	6 cut(s)	307, 315, 465, 657, 686, 872
BspEI	TCCGGA	2 cut(s)	300, 485
BspFNI	CGCG	4 cut(s)	174, 366, 719, 848
BspLI	GGNNCC	9 cut(s)	283, 314, 328, 484, 490, 612, 685, 774, 912
BspMI	ACCTGC	2 cut(s)	8, 546
BspPI	GGATC	2 cut(s)	248, 610
BspT107I	GGYRCC	2 cut(s)	281, 772
BsrBI	CCGCTC	1 cut(s)	244
BsrFI	RCCGGY	4 cut(s)	269, 479, 754, 850
BsrGI	TGTACA	1 cut(s)	876
BsrI	ACTGG	2 cut(s)	167, 829
BssAI	RCCGGY	4 cut(s)	269, 479, 754, 850
BssECI	CCNNGG	6 cut(s)	308, 309, 406, 550, 681, 776
BssMI	GATC	4 cut(s)	253, 573, 615, 660
BssNI	GRCGYC	5 cut(s)	282, 420, 605, 722, 773
Bst2UI	CCWGG	2 cut(s)	310, 778
Bst4CI	ACNGT	4 cut(s)	493, 541, 706, 858
BstACI	GRCGYC	5 cut(s)	282, 420, 605, 722, 773
BstAUI	TGTACA	1 cut(s)	876
BstC8I	GCNNGC	2 cut(s)	378, 852
BstDSI	CCRYGG	1 cut(s)	550
BstF5I	GGATG	3 cut(s)	88, 471, 873
BstFNI	CGCG	4 cut(s)	174, 366, 719, 848
BstH2I	RGCGCY	2 cut(s)	285, 776
BstHHI	GCGC	3 cut(s)	284, 775, 850
BstKTI	GATC	4 cut(s)	256, 576, 618, 663
BstMAI	GTCTC	1 cut(s)	439
BstMBI	GATC	4 cut(s)	253, 573, 615, 660
BstMWI	GCNNNNNNNGC	6 cut(s)	124, 219, 279, 324, 692, 917
BstNI	CCWGG	2 cut(s)	310, 778
BstNSI	RCATGY	1 cut(s)	52
BstSCI	CCNGG	6 cut(s)	308, 322, 406, 529, 680, 776
BstUI	CGCG	4 cut(s)	174, 366, 719, 848
BstV1I	GCAGC	7 cut(s)	130, 133, 136, 234, 434, 682, 738
BstV2I	GAAGAC	1 cut(s)	210
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
BsuRI	GGCC	6 cut(s)	307, 315, 465, 657, 686, 872
BtgI	CCRYGG	1 cut(s)	550
BtgZI	GCGATG	2 cut(s)	291, 700
BtsCI	GGATG	3 cut(s)	88, 471, 873
BveI	ACCTGC	2 cut(s)	8, 546
Cac8I	GCNNGC	2 cut(s)	378, 852
CfoI	GCGC	3 cut(s)	284, 775, 850
Cfr10I	RCCGGY	4 cut(s)	269, 479, 754, 850
Cfr13I	GGNCC	6 cut(s)	306, 313, 611, 647, 655, 684
CpoI	CGGWCCG	1 cut(s)	647
CseI	GACGC	2 cut(s)	594, 711
Csp6I	GTAC	2 cut(s)	742, 877
CspI	CGGWCCG	1 cut(s)	647
CviAII	CATG	3 cut(s)	49, 382, 874
CviQI	GTAC	2 cut(s)	742, 877
DinI	GGCGCC	2 cut(s)	283, 774
DpnI	GATC	4 cut(s)	255, 575, 617, 662
DpnII	GATC	4 cut(s)	253, 573, 615, 660
DrdI	GACNNNNNNGTC	1 cut(s)	604
DseDI	GACNNNNNNGTC	1 cut(s)	604
EaeI	YGGCCR	1 cut(s)	870
EciI	GGCGGA	3 cut(s)	426, 568, 927
Eco24I	GRGCYC	3 cut(s)	378, 389, 913
Eco47I	GGWCC	2 cut(s)	611, 647
Eco57I	CTGAAG	1 cut(s)	216
EcoO109I	RGGNCCY	1 cut(s)	684
EcoRII	CCWGG	2 cut(s)	308, 776
EcoT38I	GRGCYC	3 cut(s)	378, 389, 913
EgeI	GGCGCC	2 cut(s)	283, 774
EheI	GGCGCC	2 cut(s)	283, 774
Esp3I	CGTCTC	1 cut(s)	439
FaeI	CATG	3 cut(s)	52, 385, 877
FaiI	YATR	6 cut(s)	50, 72, 359, 383, 566, 875
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	3 cut(s)	48, 381, 873
FauI	CCCGC	3 cut(s)	371, 385, 821
FblI	GTMKAC	1 cut(s)	521
FokI	GGATG	3 cut(s)	75, 458, 880
FriOI	GRGCYC	3 cut(s)	378, 389, 913
FspBI	CTAG	1 cut(s)	674
GlaI	GCGC	3 cut(s)	283, 774, 849
GsaI	CCCAGC	1 cut(s)	118
HaeII	RGCGCY	2 cut(s)	285, 776
HaeIII	GGCC	6 cut(s)	307, 315, 465, 657, 686, 872
HgaI	GACGC	2 cut(s)	594, 711
HhaI	GCGC	3 cut(s)	284, 775, 850
Hin1I	GRCGYC	5 cut(s)	282, 420, 605, 722, 773
Hin1II	CATG	3 cut(s)	52, 385, 877
Hin6I	GCGC	3 cut(s)	282, 773, 848
HinP1I	GCGC	3 cut(s)	282, 773, 848
HincII	GTYRAC	1 cut(s)	522
HindII	GTYRAC	1 cut(s)	522
HindIII	AAGCTT	1 cut(s)	59
HinfI	GANTC	1 cut(s)	441
HphI	GGTGA	8 cut(s)	20, 35, 56, 86, 92, 98, 469, 622
Hpy166II	GTNNAC	2 cut(s)	522, 709
Hpy188I	TCNGA	6 cut(s)	159, 196, 253, 615, 668, 915
Hpy188III	TCNNGA	8 cut(s)	55, 301, 398, 438, 486, 571, 619, 792
Hpy8I	GTNNAC	2 cut(s)	522, 709
Hpy99I	CGWCG	9 cut(s)	422, 425, 428, 497, 523, 604, 610, 668, 727
HpyAV	CCTTC	3 cut(s)	556, 599, 747
HpyCH4III	ACNGT	4 cut(s)	493, 541, 706, 858
HpyCH4IV	ACGT	4 cut(s)	420, 501, 511, 584
HpyCH4V	TGCA	1 cut(s)	920
HpyF10VI	GCNNNNNNNGC	6 cut(s)	124, 219, 279, 324, 692, 917
HpySE526I	ACGT	4 cut(s)	420, 501, 511, 584
Hsp92I	GRCGYC	5 cut(s)	282, 420, 605, 722, 773
Hsp92II	CATG	3 cut(s)	52, 385, 877
HspAI	GCGC	3 cut(s)	282, 773, 848
KasI	GGCGCC	2 cut(s)	281, 772
Kpn2I	TCCGGA	2 cut(s)	300, 485
KroI	GCCGGC	1 cut(s)	850
KroNI	GCCGGC	1 cut(s)	852
Kzo9I	GATC	4 cut(s)	253, 573, 615, 660
LmnI	GCTCC	4 cut(s)	332, 488, 533, 916
Lsp1109I	GCAGC	7 cut(s)	130, 133, 136, 234, 434, 682, 738
MaeI	CTAG	1 cut(s)	674
MaeII	ACGT	4 cut(s)	420, 501, 511, 584
MaeIII	GTNAC	5 cut(s)	23, 502, 541, 842, 884
MalI	GATC	4 cut(s)	255, 575, 617, 662
MbiI	CCGCTC	1 cut(s)	244
MboI	GATC	4 cut(s)	253, 573, 615, 660
MboII	GAAGA	3 cut(s)	209, 212, 215
MflI	RGATCY	1 cut(s)	253
MhlI	GDGCHC	3 cut(s)	378, 389, 913
MlsI	TGGCCA	1 cut(s)	872
MluNI	TGGCCA	1 cut(s)	872
Mly113I	GGCGCC	2 cut(s)	282, 773
MmeI	TCCRAC	3 cut(s)	171, 646, 938
Mox20I	TGGCCA	1 cut(s)	872
MroI	TCCGGA	2 cut(s)	300, 485
MroNI	GCCGGC	1 cut(s)	850
MroXI	GAANNNNTTC	1 cut(s)	626
MscI	TGGCCA	1 cut(s)	872
Msp20I	TGGCCA	1 cut(s)	872
MspA1I	CMGCKG	2 cut(s)	225, 882
MspR9I	CCNGG	6 cut(s)	310, 324, 408, 531, 682, 778
MvaI	CCWGG	2 cut(s)	310, 778
MvnI	CGCG	4 cut(s)	174, 366, 719, 848
MwoI	GCNNNNNNNGC	6 cut(s)	124, 219, 279, 324, 692, 917
NaeI	GCCGGC	1 cut(s)	852
NarI	GGCGCC	2 cut(s)	282, 773
NciI	CCSGG	4 cut(s)	324, 408, 531, 682
NdeII	GATC	4 cut(s)	253, 573, 615, 660
NgoMIV	GCCGGC	1 cut(s)	850
NlaIII	CATG	3 cut(s)	52, 385, 877
NlaIV	GGNNCC	9 cut(s)	283, 314, 328, 484, 490, 612, 685, 774, 912
NmuCI	GTSAC	4 cut(s)	23, 502, 842, 884
NspI	RCATGY	1 cut(s)	52
PaqCI	CACCTGC	1 cut(s)	8
PasI	CCCWGGG	1 cut(s)	309
PciI	ACATGT	1 cut(s)	48
PcsI	WCGNNNNNNNCGW	2 cut(s)	429, 558
PdiI	GCCGGC	1 cut(s)	852
PdmI	GAANNNNTTC	1 cut(s)	626
PfeI	GAWTC	1 cut(s)	441
PflFI	GACNNNGTC	2 cut(s)	422, 604
PluTI	GGCGCC	2 cut(s)	285, 776
PscI	ACATGT	1 cut(s)	48
Psp6I	CCWGG	2 cut(s)	308, 776
PspFI	CCCAGC	1 cut(s)	114
PspGI	CCWGG	2 cut(s)	308, 776
PspN4I	GGNNCC	9 cut(s)	283, 314, 328, 484, 490, 612, 685, 774, 912
PspPI	GGNCC	6 cut(s)	306, 313, 611, 647, 655, 684
PsuI	RGATCY	1 cut(s)	253
PsyI	GACNNNGTC	2 cut(s)	422, 604
PvuII	CAGCTG	1 cut(s)	882
RsaI	GTAC	2 cut(s)	743, 878
RsaNI	GTAC	2 cut(s)	742, 877
Rsr2I	CGGWCCG	1 cut(s)	647
RsrII	CGGWCCG	1 cut(s)	647
SalI	GTCGAC	1 cut(s)	520
Sau3AI	GATC	4 cut(s)	253, 573, 615, 660
Sau96I	GGNCC	6 cut(s)	306, 313, 611, 647, 655, 684
ScrFI	CCNGG	6 cut(s)	310, 324, 408, 531, 682, 778
SduI	GDGCHC	3 cut(s)	378, 389, 913
SfoI	GGCGCC	2 cut(s)	283, 774
SgrAI	CRCCGGYG	1 cut(s)	269
SinI	GGWCC	2 cut(s)	611, 647
SpeI	ACTAGT	1 cut(s)	673
SspDI	GGCGCC	2 cut(s)	281, 772
SspMI	CTAG	1 cut(s)	674
StyD4I	CCNGG	6 cut(s)	308, 322, 406, 529, 680, 776
TaaI	ACNGT	4 cut(s)	493, 541, 706, 858
TaiI	ACGT	4 cut(s)	423, 504, 514, 587
TaqI	TCGA	6 cut(s)	56, 426, 521, 561, 572, 821
TatI	WGTACW	1 cut(s)	876
TauI	GCSGC	8 cut(s)	228, 244, 276, 318, 453, 722, 773, 814
TfiI	GAWTC	1 cut(s)	441
TseFI	GTSAC	4 cut(s)	23, 502, 842, 884
TseI	GCWGC	7 cut(s)	118, 121, 124, 222, 447, 695, 751
Tsp45I	GTSAC	4 cut(s)	23, 502, 842, 884
TspDTI	ATGAA	1 cut(s)	17
Tth111I	GACNNNGTC	2 cut(s)	422, 604
VpaK11BI	GGWCC	2 cut(s)	611, 647
XceI	RCATGY	1 cut(s)	52
XmiI	GTMKAC	1 cut(s)	521
XmnI	GAANNNNTTC	1 cut(s)	626
XspI	CTAG	1 cut(s)	674
ZraI	GACGTC	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.