Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0013067

Physical Location & Seq

Genomic Coordinates Reverse (-)

47328301 .. 47329266

Gene Structure 966 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1384100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGAAGGGTGAATATGTTGACAGCAAGAGTGAGTCCCAAACCATCTTCTCCAAGCTTCACCACCAAAACCTCCACCATCCCCACCCCCAACACCCCCACTTACACCACGCCCACCAATTTTCCAACCCTTTCCAAGTCATCCCCCACCGTGAATGCCAAACCTCCGAAGAAGAAGACACCAGCCGAACCAGCAGCGGCACCGCCACCGTCACCAACACCAACCCATCTCCCCACAACCCCCACCCCACCTCCTCCGCCGACCCCATCAACAATAACAACCCTTCTGCCGACGGAGCCACTATTGAAGTCATCCGACGGCCCCGAGGCCGCCCACCTGGCTCCAAAAACAAACCCAAGCCCCCCGTCATCATAACCCGCGACTCCGAGCCTCCAATGAGCCCCTACATTCTCGAAGTCCCCTCCGGAAACGACGTCGTCGAAGCTGTCTCTCGCTTCTGTTCTCGCAAAAGCATCGGGCTCTGCGTTCTCACAGGCTCCGGAACCGTGGCTAATGTCACCCTTCGCCAGCCGTCAACTACGCCAGGCGCCACCGTCATTTTTCACGGCCGTTTCGACATCCTCTCCATCTCGGCTACTTTCCTCCCCCACTCGTCGCCGTCTTGCCCCGTCTCCATCCCCAGCGGCTTCACCATCTCTCTGGCGGGCCCGCAGGGTCAGATCGTTGGAGGCCTCGTGGGCGGGGCCCTTATCGCCGCCGGAACGGTTTACCTAGTCGCCGCGTCGTTTAACAATCCTTCTTATCATCGCCTCCCCGTGGAAGATGAGGTGGTCAGGAACTCTGGCTCGGGTGAGGTCCATTCGCCGCAGTTGTCTGGGGGTGCAGAGAGTGGAGGACACGCGCCGCAGCCTTCACAGTCGTGTGGGATGTCCATGTACAGCAGTCAATTGCCTACTGATATAATATGGGCTCCAACTGCAAGGCAACCACCACCTCCGCCTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

322

Amino Acids

34.08

Weight (kDa)

6.8

Isoelectric Point (pI)

57.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCC	PF03479	134 - 251	3.1e-20	Plants and Prokaryotes Conserved (PCC) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14490 AT1G14490 AT5G49700
fragaria_vesca	FvH4_5g35490
malus_domestica	MD08G1196300.v1.1 MD15G1384100.v1.1
prunus_persica	Prupe.1G530300_v2.0.a1
pyrus_communis	pycom08g16870
rosa_chinensis	RchiOBHm_Chr7g0236871
rosa_laevigata	RLG00000001054
rosa_multiflora	Rmu_sc0002867.1_g000011
rosa_roxburghii	Rroxscaffold_3G00224740
rosa_rugosa	Rorug07G0300400
rosa_samantha	Rh7AG455300 Rh7BG426500 Rh7CG474000 Rh7DG443300
rosa_wichuraiana	Rw7G037800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	435
AccB1I	GGYRCC	2 cut(s)	197, 545
AccII	CGCG	3 cut(s)	378, 740, 860
AccIII	TCCGGA	2 cut(s)	422, 497
AcoI	YGGCCR	1 cut(s)	565
AcyI	GRCGYC	2 cut(s)	432, 546
AfaI	GTAC	1 cut(s)	896
AfiI	CCNNNNNNNGG	1 cut(s)	775
AgsI	TTSAA	1 cut(s)	305
AjnI	CCWGG	2 cut(s)	334, 541
AleI	CACNNNNGTG	1 cut(s)	877
AluBI	AGCT	2 cut(s)	55, 443
AluI	AGCT	2 cut(s)	55, 443
Alw26I	GTCTC	2 cut(s)	451, 634
Ama87I	CYCGRG	2 cut(s)	321, 805
Aor13HI	TCCGGA	2 cut(s)	422, 497
AoxI	GGCC	6 cut(s)	317, 325, 565, 664, 688, 702
ApaI	GGGCCC	2 cut(s)	668, 706
ApeKI	GCWGC	2 cut(s)	192, 865
AspLEI	GCGC	2 cut(s)	548, 862
AspS9I	GGNCC	6 cut(s)	318, 664, 665, 702, 703, 814
AsuHPI	GGTGA	6 cut(s)	20, 50, 202, 508, 640, 821
AvaI	CYCGRG	2 cut(s)	321, 805
AvaII	GGWCC	1 cut(s)	814
BaeGI	GKGCMC	2 cut(s)	668, 706
BanI	GGYRCC	2 cut(s)	197, 545
BanII	GRGCYC	5 cut(s)	401, 480, 668, 706, 931
BauI	CACGAG	1 cut(s)	692
BbsI	GAAGAC	1 cut(s)	180
BbvI	GCAGC	2 cut(s)	204, 877
BccI	CCATC	7 cut(s)	50, 84, 232, 272, 593, 641, 659
BceAI	ACGGC	5 cut(s)	332, 514, 552, 580, 601
BcgI	CGANNNNNNTGC	2 cut(s)	454, 488
BciT130I	CCWGG	2 cut(s)	336, 543
BcoDI	GTCTC	2 cut(s)	451, 634
BfaI	CTAG	1 cut(s)	731
BfoI	RGCGCY	1 cut(s)	549
BglI	GCCNNNNNGGC	2 cut(s)	336, 696
BisI	GCNGC	9 cut(s)	193, 196, 328, 643, 714, 738, 824, 863, 866
BlsI	GCNGC	9 cut(s)	194, 197, 329, 644, 715, 739, 825, 864, 867
Bme1390I	CCNGG	2 cut(s)	336, 543
Bme18I	GGWCC	1 cut(s)	814
BmeT110I	CYCGRG	2 cut(s)	321, 805
BmgT120I	GGNCC	6 cut(s)	318, 664, 665, 702, 703, 814
BmrFI	CCNGG	2 cut(s)	336, 543
BmsI	GCATC	1 cut(s)	480
BpiI	GAAGAC	1 cut(s)	180
BsaHI	GRCGYC	2 cut(s)	432, 546
BsaJI	CCNNGG	3 cut(s)	322, 504, 774
BsaWI	WCCGGW	2 cut(s)	422, 497
BsaXI	ACNNNNNCTCC	6 cut(s)	233, 263, 566, 596, 678, 708
Bsc4I	CCNNNNNNNGG	1 cut(s)	775
BseAI	TCCGGA	2 cut(s)	422, 497
BseBI	CCWGG	2 cut(s)	336, 543
BseDI	CCNNGG	3 cut(s)	322, 504, 774
BseGI	GGATG	6 cut(s)	76, 138, 309, 576, 633, 891
BseLI	CCNNNNNNNGG	1 cut(s)	775
BseRI	GAGGAG	1 cut(s)	241
BseSI	GKGCMC	2 cut(s)	668, 706
BseX3I	CGGCCG	1 cut(s)	565
BseXI	GCAGC	2 cut(s)	204, 877
BseYI	CCCAGC	1 cut(s)	638
BsgI	GTGCAG	1 cut(s)	861
Bsh1236I	CGCG	3 cut(s)	378, 740, 860
Bsh1285I	CGRYCG	1 cut(s)	568
BshFI	GGCC	6 cut(s)	319, 327, 567, 666, 690, 704
BshNI	GGYRCC	2 cut(s)	197, 545
BsiEI	CGRYCG	1 cut(s)	568
BsiHKCI	CYCGRG	2 cut(s)	321, 805
BsiSI	CCGG	3 cut(s)	423, 498, 717
BslFI	GGGAC	2 cut(s)	19, 401
BslI	CCNNNNNNNGG	1 cut(s)	775
BsmAI	GTCTC	2 cut(s)	451, 634
BsmBI	CGTCTC	1 cut(s)	634
BsmFI	GGGAC	2 cut(s)	19, 401
BsmI	GAATGC	1 cut(s)	158
BsnI	GGCC	6 cut(s)	319, 327, 567, 666, 690, 704
BsoBI	CYCGRG	2 cut(s)	321, 805
Bsp120I	GGGCCC	2 cut(s)	664, 702
Bsp1286I	GDGCHC	5 cut(s)	401, 480, 668, 706, 931
Bsp13I	TCCGGA	2 cut(s)	422, 497
Bsp1407I	TGTACA	1 cut(s)	894
Bsp143I	GATC	1 cut(s)	678
BspANI	GGCC	6 cut(s)	319, 327, 567, 666, 690, 704
BspEI	TCCGGA	2 cut(s)	422, 497
BspFNI	CGCG	3 cut(s)	378, 740, 860
BspT107I	GGYRCC	2 cut(s)	197, 545
BsrGI	TGTACA	1 cut(s)	894
BssECI	CCNNGG	3 cut(s)	322, 504, 774
BssMI	GATC	1 cut(s)	678
BssNI	GRCGYC	2 cut(s)	432, 546
BssSI	CACGAG	1 cut(s)	692
Bst2BI	CACGAG	1 cut(s)	692
Bst2UI	CCWGG	2 cut(s)	336, 543
Bst4CI	ACNGT	6 cut(s)	149, 208, 505, 553, 724, 876
BstACI	GRCGYC	2 cut(s)	432, 546
BstAUI	TGTACA	1 cut(s)	894
BstC8I	GCNNGC	3 cut(s)	527, 664, 668
BstDSI	CCRYGG	2 cut(s)	504, 774
BstF5I	GGATG	6 cut(s)	76, 138, 309, 576, 633, 891
BstFNI	CGCG	3 cut(s)	378, 740, 860
BstH2I	RGCGCY	1 cut(s)	549
BstHHI	GCGC	2 cut(s)	548, 862
BstKTI	GATC	1 cut(s)	681
BstMAI	GTCTC	2 cut(s)	451, 634
BstMBI	GATC	1 cut(s)	678
BstMCI	CGRYCG	1 cut(s)	568
BstMWI	GCNNNNNNNGC	6 cut(s)	189, 293, 336, 696, 710, 935
BstNI	CCWGG	2 cut(s)	336, 543
BstSCI	CCNGG	2 cut(s)	334, 541
BstSLI	GKGCMC	2 cut(s)	668, 706
BstUI	CGCG	3 cut(s)	378, 740, 860
BstV1I	GCAGC	2 cut(s)	204, 877
BstV2I	GAAGAC	1 cut(s)	180
BstXI	CCANNNNNNTGG	1 cut(s)	658
BstZI	CGGCCG	1 cut(s)	565
BsuRI	GGCC	6 cut(s)	319, 327, 567, 666, 690, 704
BtgI	CCRYGG	2 cut(s)	504, 774
BtgZI	GCGATG	1 cut(s)	749
BtsCI	GGATG	6 cut(s)	76, 138, 309, 576, 633, 891
Cac8I	GCNNGC	3 cut(s)	527, 664, 668
CfoI	GCGC	2 cut(s)	548, 862
Cfr13I	GGNCC	6 cut(s)	318, 664, 665, 702, 703, 814
CseI	GACGC	1 cut(s)	729
Csp6I	GTAC	1 cut(s)	895
CviAII	CATG	1 cut(s)	892
CviQI	GTAC	1 cut(s)	895
DinI	GGCGCC	1 cut(s)	547
DpnI	GATC	1 cut(s)	680
DpnII	GATC	1 cut(s)	678
EaeI	YGGCCR	1 cut(s)	565
EagI	CGGCCG	1 cut(s)	565
EciI	GGCGGA	2 cut(s)	244, 945
EclXI	CGGCCG	1 cut(s)	565
Eco147I	AGGCCT	1 cut(s)	690
Eco24I	GRGCYC	5 cut(s)	401, 480, 668, 706, 931
Eco47I	GGWCC	1 cut(s)	814
Eco52I	CGGCCG	1 cut(s)	565
Eco88I	CYCGRG	2 cut(s)	321, 805
EcoO109I	RGGNCCY	2 cut(s)	702, 703
EcoRII	CCWGG	2 cut(s)	334, 541
EcoT38I	GRGCYC	5 cut(s)	401, 480, 668, 706, 931
EgeI	GGCGCC	1 cut(s)	547
EheI	GGCGCC	1 cut(s)	547
Esp3I	CGTCTC	1 cut(s)	634
FaeI	CATG	1 cut(s)	895
FaiI	YATR	5 cut(s)	15, 371, 893, 920, 925
FaqI	GGGAC	2 cut(s)	19, 401
FatI	CATG	1 cut(s)	891
FauI	CCCGC	4 cut(s)	383, 655, 675, 692
Fnu4HI	GCNGC	9 cut(s)	193, 196, 328, 643, 714, 738, 824, 863, 866
FokI	GGATG	6 cut(s)	63, 125, 296, 563, 620, 898
FriOI	GRGCYC	5 cut(s)	401, 480, 668, 706, 931
Fsp4HI	GCNGC	9 cut(s)	193, 196, 328, 643, 714, 738, 824, 863, 866
FspBI	CTAG	1 cut(s)	731
GlaI	GCGC	2 cut(s)	547, 861
GluI	GCNGC	9 cut(s)	193, 196, 328, 643, 714, 738, 824, 863, 866
GsaI	CCCAGC	1 cut(s)	642
HaeII	RGCGCY	1 cut(s)	549
HaeIII	GGCC	6 cut(s)	319, 327, 567, 666, 690, 704
HapII	CCGG	3 cut(s)	423, 498, 717
HgaI	GACGC	1 cut(s)	729
HhaI	GCGC	2 cut(s)	548, 862
Hin1I	GRCGYC	2 cut(s)	432, 546
Hin1II	CATG	1 cut(s)	895
Hin6I	GCGC	2 cut(s)	546, 860
HinP1I	GCGC	2 cut(s)	546, 860
HincII	GTYRAC	2 cut(s)	19, 534
HindII	GTYRAC	2 cut(s)	19, 534
HindIII	AAGCTT	1 cut(s)	53
HinfI	GANTC	2 cut(s)	32, 380
HpaII	CCGG	3 cut(s)	423, 498, 717
HphI	GGTGA	6 cut(s)	20, 50, 202, 508, 640, 821
Hpy166II	GTNNAC	3 cut(s)	19, 534, 727
Hpy188I	TCNGA	4 cut(s)	166, 314, 385, 678
Hpy188III	TCNNGA	4 cut(s)	410, 423, 498, 793
Hpy8I	GTNNAC	3 cut(s)	19, 534, 727
Hpy99I	CGWCG	7 cut(s)	293, 318, 434, 437, 440, 616, 745
HpyAV	CCTTC	4 cut(s)	291, 530, 765, 879
HpyCH4III	ACNGT	6 cut(s)	149, 208, 505, 553, 724, 876
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	2 cut(s)	842, 938
HpyF10VI	GCNNNNNNNGC	6 cut(s)	189, 293, 336, 696, 710, 935
HpySE526I	ACGT	1 cut(s)	432
Hsp92I	GRCGYC	2 cut(s)	432, 546
Hsp92II	CATG	1 cut(s)	895
HspAI	GCGC	2 cut(s)	546, 860
KasI	GGCGCC	1 cut(s)	545
Kpn2I	TCCGGA	2 cut(s)	422, 497
Kzo9I	GATC	1 cut(s)	678
LmnI	GCTCC	4 cut(s)	293, 344, 500, 934
Lsp1109I	GCAGC	2 cut(s)	204, 877
LweI	GCATC	1 cut(s)	480
MaeI	CTAG	1 cut(s)	731
MaeII	ACGT	1 cut(s)	432
MaeIII	GTNAC	2 cut(s)	208, 514
MalI	GATC	1 cut(s)	680
MboI	GATC	1 cut(s)	678
MboII	GAAGA	5 cut(s)	37, 179, 182, 185, 791
MfeI	CAATTG	1 cut(s)	905
MhlI	GDGCHC	5 cut(s)	401, 480, 668, 706, 931
MluCI	AATT	2 cut(s)	116, 905
Mly113I	GGCGCC	1 cut(s)	546
MlyI	GAGTC	2 cut(s)	41, 374
MmeI	TCCRAC	4 cut(s)	147, 337, 664, 956
MroI	TCCGGA	2 cut(s)	422, 497
MseI	TTAA	1 cut(s)	747
MslI	CAYNNNNRTG	1 cut(s)	877
MspA1I	CMGCKG	2 cut(s)	195, 642
MspI	CCGG	3 cut(s)	423, 498, 717
MspR9I	CCNGG	2 cut(s)	336, 543
MunI	CAATTG	1 cut(s)	905
Mva1269I	GAATGC	1 cut(s)	158
MvaI	CCWGG	2 cut(s)	336, 543
MvnI	CGCG	3 cut(s)	378, 740, 860
MwoI	GCNNNNNNNGC	6 cut(s)	189, 293, 336, 696, 710, 935
NarI	GGCGCC	1 cut(s)	546
NdeII	GATC	1 cut(s)	678
NlaIII	CATG	1 cut(s)	895
NmeAIII	GCCGAG	1 cut(s)	569
NmuCI	GTSAC	2 cut(s)	208, 514
OliI	CACNNNNGTG	1 cut(s)	877
PceI	AGGCCT	1 cut(s)	690
PcsI	WCGNNNNNNNCGW	3 cut(s)	435, 480, 570
PctI	GAATGC	1 cut(s)	158
PflFI	GACNNNGTC	1 cut(s)	434
PkrI	GCNGC	9 cut(s)	194, 197, 329, 644, 715, 739, 825, 864, 867
PleI	GAGTC	2 cut(s)	40, 374
PluTI	GGCGCC	1 cut(s)	549
PpsI	GAGTC	2 cut(s)	40, 374
Psp6I	CCWGG	2 cut(s)	334, 541
PspFI	CCCAGC	1 cut(s)	638
PspGI	CCWGG	2 cut(s)	334, 541
PspOMI	GGGCCC	2 cut(s)	664, 702
PspPI	GGNCC	6 cut(s)	318, 664, 665, 702, 703, 814
PsyI	GACNNNGTC	1 cut(s)	434
RsaI	GTAC	1 cut(s)	896
RsaNI	GTAC	1 cut(s)	895
RseI	CAYNNNNRTG	1 cut(s)	877
SaqAI	TTAA	1 cut(s)	747
SatI	GCNGC	9 cut(s)	193, 196, 328, 643, 714, 738, 824, 863, 866
Sau3AI	GATC	1 cut(s)	678
Sau96I	GGNCC	6 cut(s)	318, 664, 665, 702, 703, 814
SchI	GAGTC	2 cut(s)	41, 374
ScrFI	CCNGG	2 cut(s)	336, 543
SduI	GDGCHC	5 cut(s)	401, 480, 668, 706, 931
SfaNI	GCATC	1 cut(s)	480
SfoI	GGCGCC	1 cut(s)	547
SinI	GGWCC	1 cut(s)	814
SmiMI	CAYNNNNRTG	1 cut(s)	877
Sse9I	AATT	2 cut(s)	116, 905
SseBI	AGGCCT	1 cut(s)	690
SspDI	GGCGCC	1 cut(s)	545
SspMI	CTAG	1 cut(s)	731
StuI	AGGCCT	1 cut(s)	690
StyD4I	CCNGG	2 cut(s)	334, 541
TaaI	ACNGT	6 cut(s)	149, 208, 505, 553, 724, 876
TaiI	ACGT	1 cut(s)	435
TaqI	TCGA	3 cut(s)	411, 438, 573
TasI	AATT	2 cut(s)	116, 905
TatI	WGTACW	1 cut(s)	894
TauI	GCSGC	7 cut(s)	198, 330, 645, 716, 740, 826, 865
Tru1I	TTAA	1 cut(s)	747
Tru9I	TTAA	1 cut(s)	747
TseFI	GTSAC	2 cut(s)	208, 514
TseI	GCWGC	2 cut(s)	192, 865
Tsp45I	GTSAC	2 cut(s)	208, 514
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	306
Tth111I	GACNNNGTC	1 cut(s)	434
VpaK11BI	GGWCC	1 cut(s)	814
XspI	CTAG	1 cut(s)	731
ZraI	GACGTC	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.