Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0013067

Physical Location & Seq

Genomic Coordinates Reverse (-)

25339688 .. 25340656

Gene Structure 969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1196300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGAGAGGTGAGTATGTTGACAGCAAGAGTGACTCCCAAAACATCTTCTCCAAGCTTCACCACCCAAACCAACAAAACCCCCACCACCACAACTTACACCACCACCCCCACCAATTCTCCAGCCCCTTCCAAGTCATCCCCCACCGCGAATCCCAAACCTCCGAAGAAGAAGACACCAGCCGAACCAGCAGCGGCACAGCCACCGTCACCACCACCAACCCATCTCCCCACAATCCCCACCCCAACTCCTCCTCCGACCCCAACAACATCAACAACCCATCTGCCGATGGCGCCACCATTGAAGTCATCCGACGGCCCCGAGGCCGCCCACCTGGCTCCAAAAACAAACCCAAGCCCCCCGTCATCATAACTCGCGACTCTGAGCCTCCAATGAGCCCCTACATTCTCGAAGTGCACTCCGGAAACGACGTGGTCGAAGCTGTCTCCCGCTTCTGCTCTCGCAAAAACATTGGGCTCTGCGTTCTCACCGGCTCCGGAACCGTGGCCAACGTCACCCTTCGCCAGCCGTCAACTACGCCCGGCGCTACGGTAACTTTTCACGGCCGTTTCGACATCCTCTCCATATCCGCTACTTTCCTCTCCCAATCGTTGCCGTCTTGCCCCGTCTCCAACCCCAGCGGCTTCACCATCTCTCTGGCGGGCCCGCAGGGCCAGATCGTCGGGGGCCTCGTGGCCGGAGCCCTAATAGCCGCAGGAACCGTTTACCTAGTCGCCGCGTCGTTTAGCAATCCTTCTTACCATCGGCTCCCCGTGGAAGACGAGGTGGTGAGGAACTCGGTTGTGGGTGAGGGTCATTCGCCGCAGGTTTCTGGGGGTGCAGCGGACAGTGGGGGACACGCGCCACAGCCGTCACAAACGTGTGGGATGACCATGTACAGCGGTCACTTGCCTACTGATGTAATATGGGCTCCAACTGCAAGGCAACCACCACCTCCACCGCCTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

323

Amino Acids

34.18

Weight (kDa)

6.8

Isoelectric Point (pI)

58.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCC	PF03479	133 - 249	3.1e-20	Plants and Prokaryotes Conserved (PCC) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14490 AT1G14490 AT5G49700
fragaria_vesca	FvH4_5g35490
malus_domestica	MD08G1196300.v1.1 MD15G1384100.v1.1
prunus_persica	Prupe.1G530300_v2.0.a1
pyrus_communis	pycom08g16870
rosa_chinensis	RchiOBHm_Chr7g0236871
rosa_laevigata	RLG00000001054
rosa_multiflora	Rmu_sc0002867.1_g000011
rosa_roxburghii	Rroxscaffold_3G00224740
rosa_rugosa	Rorug07G0300400
rosa_samantha	Rh7AG455300 Rh7BG426500 Rh7CG474000 Rh7DG443300
rosa_wichuraiana	Rw7G037800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	814
AccB1I	GGYRCC	1 cut(s)	290
AccII	CGCG	4 cut(s)	147, 375, 737, 860
AccIII	TCCGGA	2 cut(s)	419, 494
AcoI	YGGCCR	3 cut(s)	504, 562, 693
AcyI	GRCGYC	1 cut(s)	291
AfaI	GTAC	1 cut(s)	896
AflIII	ACRYGT	1 cut(s)	878
AgsI	TTSAA	1 cut(s)	302
AjiI	CACGTC	1 cut(s)	430
AjnI	CCWGG	1 cut(s)	331
AleI	CACNNNNGTG	1 cut(s)	877
AluBI	AGCT	2 cut(s)	55, 440
AluI	AGCT	2 cut(s)	55, 440
Alw21I	GWGCWC	1 cut(s)	417
Alw26I	GTCTC	2 cut(s)	448, 631
Alw44I	GTGCAC	1 cut(s)	413
Ama87I	CYCGRG	1 cut(s)	318
Aor13HI	TCCGGA	2 cut(s)	419, 494
AoxI	GGCC	8 cut(s)	314, 322, 504, 562, 661, 670, 685, 693
ApaI	GGGCCC	1 cut(s)	665
ApaLI	GTGCAC	1 cut(s)	413
ApeKI	GCWGC	2 cut(s)	189, 839
AspLEI	GCGC	3 cut(s)	293, 545, 862
AspS9I	GGNCC	5 cut(s)	315, 661, 662, 670, 685
AsuC2I	CCSGG	1 cut(s)	540
AsuHPI	GGTGA	8 cut(s)	20, 50, 199, 478, 505, 637, 799, 818
AvaI	CYCGRG	1 cut(s)	318
BaeGI	GKGCMC	2 cut(s)	417, 665
BalI	TGGCCA	1 cut(s)	506
BanI	GGYRCC	1 cut(s)	290
BanII	GRGCYC	5 cut(s)	398, 477, 665, 703, 931
BauI	CACGAG	1 cut(s)	689
BbsI	GAAGAC	2 cut(s)	177, 783
Bbv12I	GWGCWC	1 cut(s)	417
BbvI	GCAGC	2 cut(s)	201, 851
BccI	CCATC	5 cut(s)	229, 281, 286, 656, 768
BceAI	ACGGC	6 cut(s)	329, 511, 549, 577, 598, 853
BciT130I	CCWGG	1 cut(s)	333
BcnI	CCSGG	1 cut(s)	540
BcoDI	GTCTC	2 cut(s)	448, 631
BfaI	CTAG	1 cut(s)	728
BfoI	RGCGCY	2 cut(s)	294, 546
BfuAI	ACCTGC	1 cut(s)	814
BglI	GCCNNNNNGGC	2 cut(s)	333, 669
BisI	GCNGC	8 cut(s)	190, 193, 325, 640, 711, 735, 821, 840
BlsI	GCNGC	8 cut(s)	191, 194, 326, 641, 712, 736, 822, 841
Bme1390I	CCNGG	2 cut(s)	333, 540
BmeT110I	CYCGRG	1 cut(s)	318
BmgBI	CACGTC	1 cut(s)	430
BmgT120I	GGNCC	5 cut(s)	315, 661, 662, 670, 685
BmrFI	CCNGG	2 cut(s)	333, 540
BpiI	GAAGAC	2 cut(s)	177, 783
BpmI	CTGGAG	1 cut(s)	103
BpuMI	CCSGG	1 cut(s)	540
BsaHI	GRCGYC	1 cut(s)	291
BsaJI	CCNNGG	3 cut(s)	319, 501, 771
BsaWI	WCCGGW	2 cut(s)	419, 494
Bse118I	RCCGGY	1 cut(s)	488
BseAI	TCCGGA	2 cut(s)	419, 494
BseBI	CCWGG	1 cut(s)	333
BseDI	CCNNGG	3 cut(s)	319, 501, 771
BseGI	GGATG	4 cut(s)	135, 306, 573, 891
BseMII	CTCAG	1 cut(s)	372
BseRI	GAGGAG	2 cut(s)	238, 241
BseSI	GKGCMC	2 cut(s)	417, 665
BseX3I	CGGCCG	1 cut(s)	562
BseXI	GCAGC	2 cut(s)	201, 851
BseYI	CCCAGC	1 cut(s)	635
BsgI	GTGCAG	1 cut(s)	858
Bsh1236I	CGCG	4 cut(s)	147, 375, 737, 860
Bsh1285I	CGRYCG	1 cut(s)	565
BshFI	GGCC	8 cut(s)	316, 324, 506, 564, 663, 672, 687, 695
BshNI	GGYRCC	1 cut(s)	290
BsiEI	CGRYCG	1 cut(s)	565
BsiHKAI	GWGCWC	1 cut(s)	417
BsiHKCI	CYCGRG	1 cut(s)	318
BsiSI	CCGG	5 cut(s)	420, 489, 495, 540, 696
BslFI	GGGAC	1 cut(s)	867
BsmAI	GTCTC	2 cut(s)	448, 631
BsmBI	CGTCTC	1 cut(s)	631
BsmFI	GGGAC	1 cut(s)	867
BsnI	GGCC	8 cut(s)	316, 324, 506, 564, 663, 672, 687, 695
BsoBI	CYCGRG	1 cut(s)	318
Bsp120I	GGGCCC	1 cut(s)	661
Bsp1286I	GDGCHC	6 cut(s)	398, 417, 477, 665, 703, 931
Bsp13I	TCCGGA	2 cut(s)	419, 494
Bsp1407I	TGTACA	1 cut(s)	894
Bsp143I	GATC	1 cut(s)	675
Bsp68I	TCGCGA	1 cut(s)	375
BspANI	GGCC	8 cut(s)	316, 324, 506, 564, 663, 672, 687, 695
BspCNI	CTCAG	1 cut(s)	373
BspEI	TCCGGA	2 cut(s)	419, 494
BspFNI	CGCG	4 cut(s)	147, 375, 737, 860
BspMI	ACCTGC	1 cut(s)	814
BspT107I	GGYRCC	1 cut(s)	290
BsrFI	RCCGGY	1 cut(s)	488
BsrGI	TGTACA	1 cut(s)	894
BssAI	RCCGGY	1 cut(s)	488
BssECI	CCNNGG	3 cut(s)	319, 501, 771
BssMI	GATC	1 cut(s)	675
BssNI	GRCGYC	1 cut(s)	291
BssSI	CACGAG	1 cut(s)	689
Bst2BI	CACGAG	1 cut(s)	689
Bst2UI	CCWGG	1 cut(s)	333
Bst4CI	ACNGT	5 cut(s)	205, 502, 550, 721, 848
BstACI	GRCGYC	1 cut(s)	291
BstAUI	TGTACA	1 cut(s)	894
BstC8I	GCNNGC	3 cut(s)	524, 661, 665
BstDEI	CTNAG	1 cut(s)	381
BstDSI	CCRYGG	2 cut(s)	501, 771
BstF5I	GGATG	4 cut(s)	135, 306, 573, 891
BstFNI	CGCG	4 cut(s)	147, 375, 737, 860
BstH2I	RGCGCY	2 cut(s)	294, 546
BstHHI	GCGC	3 cut(s)	293, 545, 862
BstKTI	GATC	1 cut(s)	678
BstMAI	GTCTC	2 cut(s)	448, 631
BstMBI	GATC	1 cut(s)	675
BstMCI	CGRYCG	1 cut(s)	565
BstMWI	GCNNNNNNNGC	6 cut(s)	186, 290, 333, 669, 707, 935
BstNI	CCWGG	1 cut(s)	333
BstSCI	CCNGG	2 cut(s)	331, 538
BstSLI	GKGCMC	2 cut(s)	417, 665
BstUI	CGCG	4 cut(s)	147, 375, 737, 860
BstV1I	GCAGC	2 cut(s)	201, 851
BstV2I	GAAGAC	2 cut(s)	177, 783
BstXI	CCANNNNNNTGG	1 cut(s)	655
BstZI	CGGCCG	1 cut(s)	562
BsuRI	GGCC	8 cut(s)	316, 324, 506, 564, 663, 672, 687, 695
BtgI	CCRYGG	2 cut(s)	501, 771
BtrI	CACGTC	1 cut(s)	430
BtsCI	GGATG	4 cut(s)	135, 306, 573, 891
BtsIMutI	CAGTG	1 cut(s)	853
BtuMI	TCGCGA	1 cut(s)	375
BveI	ACCTGC	1 cut(s)	814
Cac8I	GCNNGC	3 cut(s)	524, 661, 665
CfoI	GCGC	3 cut(s)	293, 545, 862
Cfr10I	RCCGGY	1 cut(s)	488
Cfr13I	GGNCC	5 cut(s)	315, 661, 662, 670, 685
CseI	GACGC	1 cut(s)	726
Csp6I	GTAC	1 cut(s)	895
CviAII	CATG	1 cut(s)	892
CviQI	GTAC	1 cut(s)	895
DdeI	CTNAG	1 cut(s)	381
DinI	GGCGCC	1 cut(s)	292
DpnI	GATC	1 cut(s)	677
DpnII	GATC	1 cut(s)	675
EaeI	YGGCCR	3 cut(s)	504, 562, 693
EagI	CGGCCG	1 cut(s)	562
EclXI	CGGCCG	1 cut(s)	562
Eco24I	GRGCYC	5 cut(s)	398, 477, 665, 703, 931
Eco52I	CGGCCG	1 cut(s)	562
Eco88I	CYCGRG	1 cut(s)	318
EcoO109I	RGGNCCY	1 cut(s)	685
EcoRII	CCWGG	1 cut(s)	331
EcoT38I	GRGCYC	5 cut(s)	398, 477, 665, 703, 931
EgeI	GGCGCC	1 cut(s)	292
EheI	GGCGCC	1 cut(s)	292
Esp3I	CGTCTC	1 cut(s)	631
FaeI	CATG	1 cut(s)	895
FaiI	YATR	5 cut(s)	15, 368, 584, 893, 925
FaqI	GGGAC	1 cut(s)	867
FatI	CATG	1 cut(s)	891
FauI	CCCGC	3 cut(s)	455, 652, 672
Fnu4HI	GCNGC	8 cut(s)	190, 193, 325, 640, 711, 735, 821, 840
FokI	GGATG	4 cut(s)	122, 293, 560, 898
FriOI	GRGCYC	5 cut(s)	398, 477, 665, 703, 931
Fsp4HI	GCNGC	8 cut(s)	190, 193, 325, 640, 711, 735, 821, 840
FspBI	CTAG	1 cut(s)	728
GlaI	GCGC	3 cut(s)	292, 544, 861
GluI	GCNGC	8 cut(s)	190, 193, 325, 640, 711, 735, 821, 840
GsaI	CCCAGC	1 cut(s)	639
GsuI	CTGGAG	1 cut(s)	103
HaeII	RGCGCY	2 cut(s)	294, 546
HaeIII	GGCC	8 cut(s)	316, 324, 506, 564, 663, 672, 687, 695
HapII	CCGG	5 cut(s)	420, 489, 495, 540, 696
HgaI	GACGC	1 cut(s)	726
HhaI	GCGC	3 cut(s)	293, 545, 862
Hin1I	GRCGYC	1 cut(s)	291
Hin1II	CATG	1 cut(s)	895
Hin6I	GCGC	3 cut(s)	291, 543, 860
HinP1I	GCGC	3 cut(s)	291, 543, 860
HincII	GTYRAC	2 cut(s)	19, 531
HindII	GTYRAC	2 cut(s)	19, 531
HindIII	AAGCTT	1 cut(s)	53
HinfI	GANTC	3 cut(s)	32, 149, 377
HpaII	CCGG	5 cut(s)	420, 489, 495, 540, 696
HphI	GGTGA	8 cut(s)	20, 50, 199, 478, 505, 637, 799, 818
Hpy166II	GTNNAC	4 cut(s)	19, 415, 531, 724
Hpy188I	TCNGA	4 cut(s)	163, 256, 311, 382
Hpy188III	TCNNGA	4 cut(s)	374, 407, 420, 495
Hpy8I	GTNNAC	4 cut(s)	19, 415, 531, 724
Hpy99I	CGWCG	4 cut(s)	315, 431, 683, 742
HpyAV	CCTTC	3 cut(s)	136, 527, 762
HpyCH4III	ACNGT	5 cut(s)	205, 502, 550, 721, 848
HpyCH4IV	ACGT	3 cut(s)	429, 510, 878
HpyCH4V	TGCA	3 cut(s)	415, 839, 938
HpyF10VI	GCNNNNNNNGC	6 cut(s)	186, 290, 333, 669, 707, 935
HpyF3I	CTNAG	1 cut(s)	381
HpySE526I	ACGT	3 cut(s)	429, 510, 878
Hsp92I	GRCGYC	1 cut(s)	291
Hsp92II	CATG	1 cut(s)	895
HspAI	GCGC	3 cut(s)	291, 543, 860
KasI	GGCGCC	1 cut(s)	290
Kpn2I	TCCGGA	2 cut(s)	419, 494
Kzo9I	GATC	1 cut(s)	675
LmnI	GCTCC	5 cut(s)	341, 497, 698, 771, 934
Lsp1109I	GCAGC	2 cut(s)	201, 851
MaeI	CTAG	1 cut(s)	728
MaeII	ACGT	3 cut(s)	429, 510, 878
MaeIII	GTNAC	6 cut(s)	29, 205, 511, 550, 870, 902
MalI	GATC	1 cut(s)	677
MboI	GATC	1 cut(s)	675
MboII	GAAGA	5 cut(s)	37, 176, 179, 182, 788
MhlI	GDGCHC	6 cut(s)	398, 417, 477, 665, 703, 931
MlsI	TGGCCA	1 cut(s)	506
MluCI	AATT	1 cut(s)	113
MluNI	TGGCCA	1 cut(s)	506
Mly113I	GGCGCC	1 cut(s)	291
MlyI	GAGTC	2 cut(s)	26, 371
MmeI	TCCRAC	4 cut(s)	279, 334, 654, 956
Mox20I	TGGCCA	1 cut(s)	506
MroI	TCCGGA	2 cut(s)	419, 494
MscI	TGGCCA	1 cut(s)	506
MslI	CAYNNNNRTG	1 cut(s)	877
Msp20I	TGGCCA	1 cut(s)	506
MspA1I	CMGCKG	4 cut(s)	192, 639, 842, 900
MspI	CCGG	5 cut(s)	420, 489, 495, 540, 696
MspR9I	CCNGG	2 cut(s)	333, 540
MvaI	CCWGG	1 cut(s)	333
MvnI	CGCG	4 cut(s)	147, 375, 737, 860
MwoI	GCNNNNNNNGC	6 cut(s)	186, 290, 333, 669, 707, 935
NarI	GGCGCC	1 cut(s)	291
NciI	CCSGG	1 cut(s)	540
NdeII	GATC	1 cut(s)	675
NlaIII	CATG	1 cut(s)	895
NmuCI	GTSAC	5 cut(s)	29, 205, 511, 870, 902
NruI	TCGCGA	1 cut(s)	375
OliI	CACNNNNGTG	1 cut(s)	877
PcsI	WCGNNNNNNNCGW	3 cut(s)	432, 567, 687
PfeI	GAWTC	1 cut(s)	149
PflFI	GACNNNGTC	1 cut(s)	431
PkrI	GCNGC	8 cut(s)	191, 194, 326, 641, 712, 736, 822, 841
PleI	GAGTC	2 cut(s)	26, 371
PluTI	GGCGCC	1 cut(s)	294
PpsI	GAGTC	2 cut(s)	26, 371
Psp6I	CCWGG	1 cut(s)	331
PspFI	CCCAGC	1 cut(s)	635
PspGI	CCWGG	1 cut(s)	331
PspOMI	GGGCCC	1 cut(s)	661
PspPI	GGNCC	5 cut(s)	315, 661, 662, 670, 685
PsyI	GACNNNGTC	1 cut(s)	431
RruI	TCGCGA	1 cut(s)	375
RsaI	GTAC	1 cut(s)	896
RsaNI	GTAC	1 cut(s)	895
RseI	CAYNNNNRTG	1 cut(s)	877
SatI	GCNGC	8 cut(s)	190, 193, 325, 640, 711, 735, 821, 840
Sau3AI	GATC	1 cut(s)	675
Sau96I	GGNCC	5 cut(s)	315, 661, 662, 670, 685
SchI	GAGTC	2 cut(s)	26, 371
ScrFI	CCNGG	2 cut(s)	333, 540
SduI	GDGCHC	6 cut(s)	398, 417, 477, 665, 703, 931
SfiI	GGCCNNNNNGGCC	1 cut(s)	669
SfoI	GGCGCC	1 cut(s)	292
SmiMI	CAYNNNNRTG	1 cut(s)	877
Sse9I	AATT	1 cut(s)	113
SspDI	GGCGCC	1 cut(s)	290
SspMI	CTAG	1 cut(s)	728
StyD4I	CCNGG	2 cut(s)	331, 538
TaaI	ACNGT	5 cut(s)	205, 502, 550, 721, 848
TaiI	ACGT	3 cut(s)	432, 513, 881
TaqI	TCGA	3 cut(s)	408, 435, 570
TasI	AATT	1 cut(s)	113
TatI	WGTACW	1 cut(s)	894
TauI	GCSGC	6 cut(s)	195, 327, 642, 713, 737, 823
TfiI	GAWTC	1 cut(s)	149
TscAI	CASTG	1 cut(s)	853
TseFI	GTSAC	5 cut(s)	29, 205, 511, 870, 902
TseI	GCWGC	2 cut(s)	189, 839
Tsp45I	GTSAC	5 cut(s)	29, 205, 511, 870, 902
TspRI	CASTG	1 cut(s)	853
Tth111I	GACNNNGTC	1 cut(s)	431
VneI	GTGCAC	1 cut(s)	413
XspI	CTAG	1 cut(s)	728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.