Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0013067

Physical Location & Seq

Genomic Coordinates Forward (+)

48659743 .. 48661793

Gene Structure 2051 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG426500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGAAAGGTGAATACGGAGGTGGTGACACCAAGAGTGAAACCCAAAACATGTTCTCGAAGCTTCACCATCATAACAACCCACAGTCTCATCCTCACCCTCACCCTCACCACCCCCAGCAGCAGCAGCAGCAGTTCCACCACCATTTCTCCAACCCATTTCAGATAACCCCAGTCCGCGAATGTCAGCCTCAAACTTCTGAAGAAGAAGACACCAGCCGAACCAGCAGCGGCACCGCCACCAAGCCGCTCGTTTCAGATCCCAACAACCCCACCGGCGGCGACGGCGCCACTATTGAAGTCGTACGGAGGCCCAGGGGCCGCCCTCCCGGCTCCAAGAACAAGCCCAAGCCTCCAGTCATCATAACCCGCGACACCGAGCCCGCCATGAGCCCTTACATTCTCGAAGTCCCCGGCGGAAGCGACGTCGTCGACGCCGTCTCCCGATTCTGCTGCCGCAAGAACATCGGCCTCGTCATCCTCACCGGCTCCGGAACCGTCGCCAACGTCACTCTACGTCAGCCGTCGACTACTCCAGGAGCTACTGTTACCTTCCACGGCCGCTTCGACATCCTCTCGATCTCCGCCACGTTCCTTCCGCAAACGACGGCGACCGGCCCGATCCCGAACGGCTTCACCATCTCCCTCGCCGGACCGCAGGGCCAGATCGTCGGAGGACTCGTCGCCGGGGCCTTGACAGCTGCCGGAACTGTTTACATCATCGCGGCGTCGTTCAACAGCCCTTCGTACCATCGGCTGCCGGTGGAGGACGAGGCGGCGCCCAGGAACTCGGTGTCGGGAGGGGAACCTCAGTCGCCGCCTCTTTCGACTGGCGGGGAGAGTGGGGGTCACGCGCCGGCACAGTCTTGTGGGATGTCCATGTACAGCTGTCACATGCCTACCGATGTTATCTGGGCTCCGACTGCAAGACAACCACCTCCTCCGCCACCCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

317

Amino Acids

33.54

Weight (kDa)

6.94

Isoelectric Point (pI)

62.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCC	PF03479	131 - 245	1.3e-19	Plants and Prokaryotes Conserved (PCC) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14490 AT1G14490 AT5G49700
fragaria_vesca	FvH4_5g35490
malus_domestica	MD08G1196300.v1.1 MD15G1384100.v1.1
prunus_persica	Prupe.1G530300_v2.0.a1
pyrus_communis	pycom08g16870
rosa_chinensis	RchiOBHm_Chr7g0236871
rosa_laevigata	RLG00000001054
rosa_multiflora	Rmu_sc0002867.1_g000011
rosa_roxburghii	Rroxscaffold_3G00224740
rosa_rugosa	Rorug07G0300400
rosa_samantha	Rh7AG455300 Rh7BG426500 Rh7CG474000 Rh7DG443300
rosa_wichuraiana	Rw7G037800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	426
AccB1I	GGYRCC	3 cut(s)	230, 284, 775
AccBSI	CCGCTC	1 cut(s)	247
AccI	GTMKAC	2 cut(s)	429, 524
AccII	CGCG	4 cut(s)	177, 369, 722, 851
AccIII	TCCGGA	1 cut(s)	488
AclWI	GGATC	2 cut(s)	251, 613
AcoI	YGGCCR	1 cut(s)	556
AcuI	CTGAAG	1 cut(s)	219
AcyI	GRCGYC	5 cut(s)	285, 423, 432, 725, 776
AfaI	GTAC	3 cut(s)	303, 746, 881
AfiI	CCNNNNNNNGG	1 cut(s)	275
AflIII	ACRYGT	1 cut(s)	48
AgsI	TTSAA	2 cut(s)	296, 733
AjnI	CCWGG	3 cut(s)	311, 532, 779
AluBI	AGCT	4 cut(s)	61, 539, 698, 885
AluI	AGCT	4 cut(s)	61, 539, 698, 885
Alw26I	GTCTC	2 cut(s)	90, 442
AlwI	GGATC	2 cut(s)	251, 613
Aor13HI	TCCGGA	1 cut(s)	488
AoxI	GGCC	7 cut(s)	308, 316, 466, 556, 613, 658, 687
ApeKI	GCWGC	8 cut(s)	118, 121, 124, 127, 225, 450, 698, 754
Asp700I	GAANNNNTTC	1 cut(s)	629
AspLEI	GCGC	3 cut(s)	287, 778, 853
AspS9I	GGNCC	6 cut(s)	309, 316, 614, 650, 658, 687
AsuC2I	CCSGG	3 cut(s)	327, 411, 685
AsuHPI	GGTGA	8 cut(s)	20, 35, 56, 86, 92, 98, 472, 625
AvaII	GGWCC	1 cut(s)	650
BanI	GGYRCC	3 cut(s)	230, 284, 775
BanII	GRGCYC	3 cut(s)	381, 392, 916
BbsI	GAAGAC	1 cut(s)	213
BbvI	GCAGC	8 cut(s)	130, 133, 136, 139, 237, 437, 685, 741
BccI	CCATC	3 cut(s)	75, 644, 756
BceAI	ACGGC	6 cut(s)	298, 419, 505, 571, 621, 643
BcgI	CGANNNNNNTGC	4 cut(s)	432, 445, 466, 479
BciT130I	CCWGG	3 cut(s)	313, 534, 781
BcnI	CCSGG	3 cut(s)	327, 411, 685
BcoDI	GTCTC	2 cut(s)	90, 442
BfoI	RGCGCY	2 cut(s)	288, 779
BglI	GCCNNNNNGGC	1 cut(s)	327
Bme1390I	CCNGG	6 cut(s)	313, 327, 411, 534, 685, 781
Bme18I	GGWCC	1 cut(s)	650
BmgT120I	GGNCC	6 cut(s)	309, 316, 614, 650, 658, 687
BmrFI	CCNGG	6 cut(s)	313, 327, 411, 534, 685, 781
BmrI	ACTGGG	1 cut(s)	164
BmuI	ACTGGG	1 cut(s)	164
BpiI	GAAGAC	1 cut(s)	213
BpmI	CTGGAG	2 cut(s)	336, 516
BpuMI	CCSGG	3 cut(s)	327, 411, 685
BsaHI	GRCGYC	5 cut(s)	285, 423, 432, 725, 776
BsaJI	CCNNGG	6 cut(s)	311, 312, 409, 553, 684, 779
BsaWI	WCCGGW	1 cut(s)	488
BsaXI	ACNNNNNCTCC	8 cut(s)	131, 161, 422, 452, 528, 558, 663, 693
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse118I	RCCGGY	5 cut(s)	272, 482, 611, 757, 853
Bse1I	ACTGG	3 cut(s)	170, 353, 832
BseAI	TCCGGA	1 cut(s)	488
BseBI	CCWGG	3 cut(s)	313, 534, 781
BseDI	CCNNGG	6 cut(s)	311, 312, 409, 553, 684, 779
BseGI	GGATG	4 cut(s)	88, 474, 567, 876
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMII	CTCAG	1 cut(s)	821
BseNI	ACTGG	3 cut(s)	170, 353, 832
BseRI	GAGGAG	1 cut(s)	927
BseX3I	CGGCCG	1 cut(s)	556
BseXI	GCAGC	8 cut(s)	130, 133, 136, 139, 237, 437, 685, 741
BseYI	CCCAGC	1 cut(s)	114
Bsh1236I	CGCG	4 cut(s)	177, 369, 722, 851
Bsh1285I	CGRYCG	2 cut(s)	559, 612
BshFI	GGCC	7 cut(s)	310, 318, 468, 558, 615, 660, 689
BshNI	GGYRCC	3 cut(s)	230, 284, 775
BsiEI	CGRYCG	2 cut(s)	559, 612
BsiWI	CGTACG	1 cut(s)	301
BslFI	GGGAC	1 cut(s)	392
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmAI	GTCTC	2 cut(s)	90, 442
BsmBI	CGTCTC	1 cut(s)	442
BsmFI	GGGAC	1 cut(s)	392
BsnI	GGCC	7 cut(s)	310, 318, 468, 558, 615, 660, 689
Bsp1286I	GDGCHC	3 cut(s)	381, 392, 916
Bsp13I	TCCGGA	1 cut(s)	488
Bsp1407I	TGTACA	1 cut(s)	879
Bsp143I	GATC	4 cut(s)	256, 576, 618, 663
BspANI	GGCC	7 cut(s)	310, 318, 468, 558, 615, 660, 689
BspCNI	CTCAG	1 cut(s)	820
BspEI	TCCGGA	1 cut(s)	488
BspFNI	CGCG	4 cut(s)	177, 369, 722, 851
BspPI	GGATC	2 cut(s)	251, 613
BspT107I	GGYRCC	3 cut(s)	230, 284, 775
BsrBI	CCGCTC	1 cut(s)	247
BsrFI	RCCGGY	5 cut(s)	272, 482, 611, 757, 853
BsrGI	TGTACA	1 cut(s)	879
BsrI	ACTGG	3 cut(s)	170, 353, 832
BssAI	RCCGGY	5 cut(s)	272, 482, 611, 757, 853
BssECI	CCNNGG	6 cut(s)	311, 312, 409, 553, 684, 779
BssMI	GATC	4 cut(s)	256, 576, 618, 663
BssNI	GRCGYC	5 cut(s)	285, 423, 432, 725, 776
Bst2UI	CCWGG	3 cut(s)	313, 534, 781
Bst4CI	ACNGT	5 cut(s)	84, 496, 544, 709, 861
BstACI	GRCGYC	5 cut(s)	285, 423, 432, 725, 776
BstAUI	TGTACA	1 cut(s)	879
BstC8I	GCNNGC	2 cut(s)	381, 855
BstDEI	CTNAG	1 cut(s)	807
BstDSI	CCRYGG	1 cut(s)	553
BstF5I	GGATG	4 cut(s)	88, 474, 567, 876
BstFNI	CGCG	4 cut(s)	177, 369, 722, 851
BstH2I	RGCGCY	2 cut(s)	288, 779
BstHHI	GCGC	3 cut(s)	287, 778, 853
BstKTI	GATC	4 cut(s)	259, 579, 621, 666
BstMAI	GTCTC	2 cut(s)	90, 442
BstMBI	GATC	4 cut(s)	256, 576, 618, 663
BstMCI	CGRYCG	2 cut(s)	559, 612
BstMWI	GCNNNNNNNGC	7 cut(s)	124, 127, 222, 282, 327, 695, 920
BstNI	CCWGG	3 cut(s)	313, 534, 781
BstNSI	RCATGY	2 cut(s)	52, 895
BstSCI	CCNGG	6 cut(s)	311, 325, 409, 532, 683, 779
BstUI	CGCG	4 cut(s)	177, 369, 722, 851
BstV1I	GCAGC	8 cut(s)	130, 133, 136, 139, 237, 437, 685, 741
BstV2I	GAAGAC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BstZI	CGGCCG	1 cut(s)	556
BsuRI	GGCC	7 cut(s)	310, 318, 468, 558, 615, 660, 689
BtgI	CCRYGG	1 cut(s)	553
BtgZI	GCGATG	1 cut(s)	703
BtsCI	GGATG	4 cut(s)	88, 474, 567, 876
Cac8I	GCNNGC	2 cut(s)	381, 855
CfoI	GCGC	3 cut(s)	287, 778, 853
Cfr10I	RCCGGY	5 cut(s)	272, 482, 611, 757, 853
Cfr13I	GGNCC	6 cut(s)	309, 316, 614, 650, 658, 687
CpoI	CGGWCCG	1 cut(s)	650
CseI	GACGC	2 cut(s)	440, 714
Csp6I	GTAC	3 cut(s)	302, 745, 880
CspI	CGGWCCG	1 cut(s)	650
CviAII	CATG	4 cut(s)	49, 385, 877, 892
CviQI	GTAC	3 cut(s)	302, 745, 880
DdeI	CTNAG	1 cut(s)	807
DinI	GGCGCC	2 cut(s)	286, 777
DpnI	GATC	4 cut(s)	258, 578, 620, 665
DpnII	GATC	4 cut(s)	256, 576, 618, 663
EaeI	YGGCCR	1 cut(s)	556
EagI	CGGCCG	1 cut(s)	556
EciI	GGCGGA	3 cut(s)	429, 571, 930
EclXI	CGGCCG	1 cut(s)	556
Eco24I	GRGCYC	3 cut(s)	381, 392, 916
Eco47I	GGWCC	1 cut(s)	650
Eco52I	CGGCCG	1 cut(s)	556
Eco57I	CTGAAG	1 cut(s)	219
EcoO109I	RGGNCCY	1 cut(s)	687
EcoRII	CCWGG	3 cut(s)	311, 532, 779
EcoT38I	GRGCYC	3 cut(s)	381, 392, 916
EgeI	GGCGCC	2 cut(s)	286, 777
EheI	GGCGCC	2 cut(s)	286, 777
Esp3I	CGTCTC	1 cut(s)	442
FaeI	CATG	4 cut(s)	52, 388, 880, 895
FaiI	YATR	6 cut(s)	50, 72, 362, 386, 878, 893
FaqI	GGGAC	1 cut(s)	392
FatI	CATG	4 cut(s)	48, 384, 876, 891
FauI	CCCGC	3 cut(s)	374, 388, 824
FblI	GTMKAC	2 cut(s)	429, 524
FokI	GGATG	4 cut(s)	75, 461, 554, 883
FriOI	GRGCYC	3 cut(s)	381, 392, 916
GlaI	GCGC	3 cut(s)	286, 777, 852
GsaI	CCCAGC	1 cut(s)	118
GsuI	CTGGAG	2 cut(s)	336, 516
HaeII	RGCGCY	2 cut(s)	288, 779
HaeIII	GGCC	7 cut(s)	310, 318, 468, 558, 615, 660, 689
HgaI	GACGC	2 cut(s)	440, 714
HhaI	GCGC	3 cut(s)	287, 778, 853
Hin1I	GRCGYC	5 cut(s)	285, 423, 432, 725, 776
Hin1II	CATG	4 cut(s)	52, 388, 880, 895
Hin6I	GCGC	3 cut(s)	285, 776, 851
HinP1I	GCGC	3 cut(s)	285, 776, 851
HincII	GTYRAC	2 cut(s)	430, 525
HindII	GTYRAC	2 cut(s)	430, 525
HindIII	AAGCTT	1 cut(s)	59
HinfI	GANTC	2 cut(s)	444, 675
HphI	GGTGA	8 cut(s)	20, 35, 56, 86, 92, 98, 472, 625
Hpy166II	GTNNAC	3 cut(s)	430, 525, 712
Hpy188I	TCNGA	5 cut(s)	162, 199, 256, 671, 918
Hpy188III	TCNNGA	7 cut(s)	55, 401, 441, 489, 574, 622, 795
Hpy8I	GTNNAC	3 cut(s)	430, 525, 712
HpyAV	CCTTC	3 cut(s)	559, 602, 750
HpyCH4III	ACNGT	5 cut(s)	84, 496, 544, 709, 861
HpyCH4IV	ACGT	4 cut(s)	423, 504, 514, 587
HpyCH4V	TGCA	1 cut(s)	923
HpyF10VI	GCNNNNNNNGC	7 cut(s)	124, 127, 222, 282, 327, 695, 920
HpyF3I	CTNAG	1 cut(s)	807
HpySE526I	ACGT	4 cut(s)	423, 504, 514, 587
Hsp92I	GRCGYC	5 cut(s)	285, 423, 432, 725, 776
Hsp92II	CATG	4 cut(s)	52, 388, 880, 895
HspAI	GCGC	3 cut(s)	285, 776, 851
KasI	GGCGCC	2 cut(s)	284, 775
Kpn2I	TCCGGA	1 cut(s)	488
KroI	GCCGGC	1 cut(s)	853
KroNI	GCCGGC	1 cut(s)	855
Kzo9I	GATC	4 cut(s)	256, 576, 618, 663
LmnI	GCTCC	4 cut(s)	335, 491, 536, 919
Lsp1109I	GCAGC	8 cut(s)	130, 133, 136, 139, 237, 437, 685, 741
MaeII	ACGT	4 cut(s)	423, 504, 514, 587
MaeIII	GTNAC	5 cut(s)	23, 505, 544, 845, 887
MalI	GATC	4 cut(s)	258, 578, 620, 665
MbiI	CCGCTC	1 cut(s)	247
MboI	GATC	4 cut(s)	256, 576, 618, 663
MboII	GAAGA	3 cut(s)	212, 215, 218
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	3 cut(s)	381, 392, 916
Mly113I	GGCGCC	2 cut(s)	285, 776
MlyI	GAGTC	1 cut(s)	669
MmeI	TCCRAC	3 cut(s)	174, 649, 941
MroI	TCCGGA	1 cut(s)	488
MroNI	GCCGGC	1 cut(s)	853
MroXI	GAANNNNTTC	1 cut(s)	629
MspA1I	CMGCKG	3 cut(s)	228, 698, 885
MspR9I	CCNGG	6 cut(s)	313, 327, 411, 534, 685, 781
MvaI	CCWGG	3 cut(s)	313, 534, 781
MvnI	CGCG	4 cut(s)	177, 369, 722, 851
MwoI	GCNNNNNNNGC	7 cut(s)	124, 127, 222, 282, 327, 695, 920
NaeI	GCCGGC	1 cut(s)	855
NarI	GGCGCC	2 cut(s)	285, 776
NciI	CCSGG	3 cut(s)	327, 411, 685
NdeII	GATC	4 cut(s)	256, 576, 618, 663
NgoMIV	GCCGGC	1 cut(s)	853
NlaIII	CATG	4 cut(s)	52, 388, 880, 895
NmuCI	GTSAC	4 cut(s)	23, 505, 845, 887
NspI	RCATGY	2 cut(s)	52, 895
PasI	CCCWGGG	1 cut(s)	312
PciI	ACATGT	1 cut(s)	48
PcsI	WCGNNNNNNNCGW	3 cut(s)	432, 561, 675
PdiI	GCCGGC	1 cut(s)	855
PdmI	GAANNNNTTC	1 cut(s)	629
PfeI	GAWTC	1 cut(s)	444
Pfl23II	CGTACG	1 cut(s)	301
PflFI	GACNNNGTC	2 cut(s)	425, 434
PfoI	TCCNGGA	1 cut(s)	532
PleI	GAGTC	1 cut(s)	669
PluTI	GGCGCC	2 cut(s)	288, 779
PpsI	GAGTC	1 cut(s)	669
PscI	ACATGT	1 cut(s)	48
Psp6I	CCWGG	3 cut(s)	311, 532, 779
PspFI	CCCAGC	1 cut(s)	114
PspGI	CCWGG	3 cut(s)	311, 532, 779
PspLI	CGTACG	1 cut(s)	301
PspPI	GGNCC	6 cut(s)	309, 316, 614, 650, 658, 687
PsuI	RGATCY	1 cut(s)	256
PsyI	GACNNNGTC	2 cut(s)	425, 434
PvuII	CAGCTG	2 cut(s)	698, 885
RsaI	GTAC	3 cut(s)	303, 746, 881
RsaNI	GTAC	3 cut(s)	302, 745, 880
Rsr2I	CGGWCCG	1 cut(s)	650
RsrII	CGGWCCG	1 cut(s)	650
SalI	GTCGAC	2 cut(s)	428, 523
Sau3AI	GATC	4 cut(s)	256, 576, 618, 663
Sau96I	GGNCC	6 cut(s)	309, 316, 614, 650, 658, 687
SchI	GAGTC	1 cut(s)	669
ScrFI	CCNGG	6 cut(s)	313, 327, 411, 534, 685, 781
SduI	GDGCHC	3 cut(s)	381, 392, 916
SfoI	GGCGCC	2 cut(s)	286, 777
SgrAI	CRCCGGYG	1 cut(s)	272
SgrDI	CGTCGACG	1 cut(s)	428
SinI	GGWCC	1 cut(s)	650
SspDI	GGCGCC	2 cut(s)	284, 775
StyD4I	CCNGG	6 cut(s)	311, 325, 409, 532, 683, 779
TaaI	ACNGT	5 cut(s)	84, 496, 544, 709, 861
TaiI	ACGT	4 cut(s)	426, 507, 517, 590
TaqI	TCGA	7 cut(s)	56, 402, 429, 524, 564, 575, 824
TatI	WGTACW	1 cut(s)	879
TauI	GCSGC	9 cut(s)	231, 247, 279, 321, 456, 561, 725, 776, 817
TfiI	GAWTC	1 cut(s)	444
TseFI	GTSAC	4 cut(s)	23, 505, 845, 887
TseI	GCWGC	8 cut(s)	118, 121, 124, 127, 225, 450, 698, 754
Tsp45I	GTSAC	4 cut(s)	23, 505, 845, 887
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	30, 319
Tth111I	GACNNNGTC	2 cut(s)	425, 434
VpaK11BI	GGWCC	1 cut(s)	650
XceI	RCATGY	2 cut(s)	52, 895
XmiI	GTMKAC	2 cut(s)	429, 524
XmnI	GAANNNNTTC	1 cut(s)	629
ZraI	GACGTC	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.