Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013067

Physical Location & Seq

Genomic Coordinates Forward (+)

20192159 .. 20193800

Gene Structure 1642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G49700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGAAAGGTGAATACAGAGAGCAAAAGAGTAACGAAATGTTTTCCAAGCTTCCTCATCATCAACAACAACAGCAACAACAACAACAACAACACTCTCTTACCTCTCACTTCCACCTCTCCTCCACCGTAACCCCCACCGTCGATGACTCCTCCATCGAAGTGGTCCGACGTCCACGTGGCAGACCACCAGGTTCCAAAAACAAACCTAAACCACCCGTCTTCGTCACACGTGACACCGACCCTCCTATGAGTCCTTACATCCTCGAAGTTCCTTCAGGAAACGACGTCGTCGAAGCCATCAACCGTTTCTGCCGCCGTAAATCCATCGGAGTCTGCGTCCTTAGTGGCTCTGGCTCTGTAGCTAACGTCACTTTACGTCAGCCATCACCGGCAGCTCTTGGCTCTACCATAACTTTCCATGGAAAGTTTGATCTCCTCTCCGTCTCCGCAACGTTTCTCCCTCCTCCGCCTCGTACTTCCTTGTCTCCTCCCGTTTCTAACTTCTTCACCGTCTCTCTCGCTGGACCTCAAGGACAAATCATCGGAGGGTTCGTCGCTGGTCCACTTATTTCGGCAGGAACAGTTTACGTCATCGCCGCAAGTTTCAACAACCCTTCTTATCACCGGTTACCGGCGGAAGAAGAGCAAAAACACTCGGCGGGGACAGGGGAAAGAGAGGGACAATCTCCGCCGGTCTCTGGTGGCGGTGAAGAGTCAGGACAGATGGCGGGAAGTGGAGGAGAGTCGTGTGGGGTATCAATGTACAGTTGCCACATGGGTGGCTCTGATGTTATTTGGGCCCCTACAGCCAGAGCTCCACCGCCATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

276

Amino Acids

29.39

Weight (kDa)

8.36

Isoelectric Point (pI)

61.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCC	PF03479	85 - 204	2.7e-20	Plants and Prokaryotes Conserved (PCC) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14490 AT1G14490 AT5G49700
fragaria_vesca	FvH4_5g35490
malus_domestica	MD08G1196300.v1.1 MD15G1384100.v1.1
prunus_persica	Prupe.1G530300_v2.0.a1
pyrus_communis	pycom08g16870
rosa_chinensis	RchiOBHm_Chr7g0236871
rosa_laevigata	RLG00000001054
rosa_multiflora	Rmu_sc0002867.1_g000011
rosa_roxburghii	Rroxscaffold_3G00224740
rosa_rugosa	Rorug07G0300400
rosa_samantha	Rh7AG455300 Rh7BG426500 Rh7CG474000 Rh7DG443300
rosa_wichuraiana	Rw7G037800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	172, 288
AclI	AACGTT	1 cut(s)	452
AcuI	CTGAAG	1 cut(s)	258
AcvI	CACGTG	2 cut(s)	176, 230
AcyI	GRCGYC	2 cut(s)	169, 285
AfaI	GTAC	2 cut(s)	475, 764
AfiI	CCNNNNNNNGG	2 cut(s)	631, 698
AflIII	ACRYGT	1 cut(s)	227
AgeI	ACCGGT	1 cut(s)	624
AgsI	TTSAA	1 cut(s)	607
AjnI	CCWGG	1 cut(s)	187
AleI	CACNNNNGTG	1 cut(s)	777
AluBI	AGCT	4 cut(s)	49, 362, 395, 815
AluI	AGCT	4 cut(s)	49, 362, 395, 815
Alw21I	GWGCWC	1 cut(s)	817
Alw26I	GTCTC	4 cut(s)	448, 489, 517, 700
AoxI	GGCC	1 cut(s)	798
ApaI	GGGCCC	1 cut(s)	802
ApeKI	GCWGC	1 cut(s)	392
AsiGI	ACCGGT	1 cut(s)	624
AspS9I	GGNCC	5 cut(s)	163, 524, 560, 798, 799
AsuHPI	GGTGA	5 cut(s)	20, 378, 499, 614, 719
AvaII	GGWCC	3 cut(s)	163, 524, 560
BaeGI	GKGCMC	1 cut(s)	802
BanII	GRGCYC	2 cut(s)	802, 817
BbrPI	CACGTG	2 cut(s)	176, 230
BbsI	GAAGAC	1 cut(s)	211
Bbv12I	GWGCWC	1 cut(s)	817
BbvI	GCAGC	1 cut(s)	404
BccI	CCATC	5 cut(s)	161, 305, 332, 391, 718
BceAI	ACGGC	1 cut(s)	300
BciT130I	CCWGG	1 cut(s)	189
BcoDI	GTCTC	4 cut(s)	448, 489, 517, 700
BfmI	CTRYAG	2 cut(s)	357, 804
BisI	GCNGC	3 cut(s)	313, 393, 597
BlsI	GCNGC	3 cut(s)	314, 394, 598
Bme1390I	CCNGG	1 cut(s)	189
Bme18I	GGWCC	3 cut(s)	163, 524, 560
BmgT120I	GGNCC	5 cut(s)	163, 524, 560, 798, 799
BmiI	GGNNCC	3 cut(s)	193, 800, 801
BmrFI	CCNGG	1 cut(s)	189
BpiI	GAAGAC	1 cut(s)	211
BpuEI	CTTGAG	1 cut(s)	513
BsaAI	YACGTR	2 cut(s)	176, 230
BsaHI	GRCGYC	2 cut(s)	169, 285
BsaI	GGTCTC	1 cut(s)	700
BsaJI	CCNNGG	1 cut(s)	418
BsaWI	WCCGGW	1 cut(s)	624
BsaXI	ACNNNNNCTCC	8 cut(s)	104, 134, 226, 256, 321, 351, 537, 567
Bsc4I	CCNNNNNNNGG	2 cut(s)	631, 698
Bse118I	RCCGGY	4 cut(s)	388, 624, 631, 691
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	418
BseGI	GGATG	1 cut(s)	258
BseLI	CCNNNNNNNGG	2 cut(s)	631, 698
BseRI	GAGGAG	6 cut(s)	109, 139, 425, 453, 477, 753
BseSI	GKGCMC	1 cut(s)	802
BseXI	GCAGC	1 cut(s)	404
BshFI	GGCC	1 cut(s)	800
BshTI	ACCGGT	1 cut(s)	624
BsiHKAI	GWGCWC	1 cut(s)	817
BsiSI	CCGG	4 cut(s)	389, 625, 632, 692
BslFI	GGGAC	2 cut(s)	676, 693
BslI	CCNNNNNNNGG	2 cut(s)	631, 698
BsmAI	GTCTC	4 cut(s)	448, 489, 517, 700
BsmBI	CGTCTC	2 cut(s)	448, 517
BsmFI	GGGAC	2 cut(s)	676, 693
BsnI	GGCC	1 cut(s)	800
Bso31I	GGTCTC	1 cut(s)	700
Bsp120I	GGGCCC	1 cut(s)	798
Bsp1286I	GDGCHC	2 cut(s)	802, 817
Bsp1407I	TGTACA	1 cut(s)	762
Bsp143I	GATC	1 cut(s)	430
Bsp19I	CCATGG	1 cut(s)	418
BspANI	GGCC	1 cut(s)	800
BspLI	GGNNCC	3 cut(s)	193, 800, 801
BspQI	GCTCTTC	1 cut(s)	636
BspTNI	GGTCTC	1 cut(s)	700
BsrFI	RCCGGY	4 cut(s)	388, 624, 631, 691
BsrGI	TGTACA	1 cut(s)	762
BssAI	RCCGGY	4 cut(s)	388, 624, 631, 691
BssECI	CCNNGG	1 cut(s)	418
BssMI	GATC	1 cut(s)	430
BssNI	GRCGYC	2 cut(s)	169, 285
BssT1I	CCWWGG	1 cut(s)	418
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	6 cut(s)	127, 139, 305, 511, 583, 767
Bst6I	CTCTTC	2 cut(s)	636, 705
BstACI	GRCGYC	2 cut(s)	169, 285
BstAUI	TGTACA	1 cut(s)	762
BstBAI	YACGTR	2 cut(s)	176, 230
BstDEI	CTNAG	1 cut(s)	341
BstDSI	CCRYGG	1 cut(s)	418
BstEII	GGTNACC	1 cut(s)	627
BstF5I	GGATG	1 cut(s)	258
BstKTI	GATC	1 cut(s)	433
BstMAI	GTCTC	4 cut(s)	448, 489, 517, 700
BstMBI	GATC	1 cut(s)	430
BstMWI	GCNNNNNNNGC	1 cut(s)	806
BstNI	CCWGG	1 cut(s)	189
BstPI	GGTNACC	1 cut(s)	627
BstSCI	CCNGG	1 cut(s)	187
BstSFI	CTRYAG	2 cut(s)	357, 804
BstSLI	GKGCMC	1 cut(s)	802
BstV1I	GCAGC	1 cut(s)	404
BstV2I	GAAGAC	1 cut(s)	211
BstXI	CCANNNNNNTGG	2 cut(s)	160, 779
BsuRI	GGCC	1 cut(s)	800
BtgI	CCRYGG	1 cut(s)	418
BtgZI	GCGATG	1 cut(s)	577
BtsCI	GGATG	1 cut(s)	258
Cfr10I	RCCGGY	4 cut(s)	388, 624, 631, 691
Cfr13I	GGNCC	5 cut(s)	163, 524, 560, 798, 799
CseI	GACGC	1 cut(s)	325
CsiI	ACCWGGT	1 cut(s)	187
Csp6I	GTAC	2 cut(s)	474, 763
CspAI	ACCGGT	1 cut(s)	624
CviAII	CATG	2 cut(s)	419, 775
CviQI	GTAC	2 cut(s)	474, 763
DdeI	CTNAG	1 cut(s)	341
DpnI	GATC	1 cut(s)	432
DpnII	GATC	1 cut(s)	430
Eam1104I	CTCTTC	2 cut(s)	636, 705
EarI	CTCTTC	2 cut(s)	636, 705
EciI	GGCGGA	3 cut(s)	456, 650, 678
Ecl136II	GAGCTC	1 cut(s)	815
Eco130I	CCWWGG	1 cut(s)	418
Eco24I	GRGCYC	2 cut(s)	802, 817
Eco31I	GGTCTC	1 cut(s)	700
Eco47I	GGWCC	3 cut(s)	163, 524, 560
Eco53kI	GAGCTC	1 cut(s)	815
Eco57I	CTGAAG	1 cut(s)	258
Eco72I	CACGTG	2 cut(s)	176, 230
Eco91I	GGTNACC	1 cut(s)	627
EcoICRI	GAGCTC	1 cut(s)	815
EcoO109I	RGGNCCY	1 cut(s)	799
EcoO65I	GGTNACC	1 cut(s)	627
EcoRII	CCWGG	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	418
EcoT38I	GRGCYC	2 cut(s)	802, 817
ErhI	CCWWGG	1 cut(s)	418
Esp3I	CGTCTC	2 cut(s)	448, 517
FaeI	CATG	2 cut(s)	422, 778
FaiI	YATR	5 cut(s)	248, 410, 420, 776, 826
FaqI	GGGAC	2 cut(s)	676, 693
FatI	CATG	2 cut(s)	418, 774
FauI	CCCGC	2 cut(s)	652, 721
Fnu4HI	GCNGC	3 cut(s)	313, 393, 597
FokI	GGATG	1 cut(s)	245
FriOI	GRGCYC	2 cut(s)	802, 817
Fsp4HI	GCNGC	3 cut(s)	313, 393, 597
GluI	GCNGC	3 cut(s)	313, 393, 597
HaeIII	GGCC	1 cut(s)	800
HapII	CCGG	4 cut(s)	389, 625, 632, 692
HgaI	GACGC	1 cut(s)	325
Hin1I	GRCGYC	2 cut(s)	169, 285
Hin1II	CATG	2 cut(s)	422, 778
HindIII	AAGCTT	1 cut(s)	47
HinfI	GANTC	5 cut(s)	146, 250, 330, 713, 743
HpaII	CCGG	4 cut(s)	389, 625, 632, 692
HphI	GGTGA	5 cut(s)	20, 378, 499, 614, 719
Hpy166II	GTNNAC	3 cut(s)	173, 563, 586
Hpy188I	TCNGA	4 cut(s)	167, 329, 545, 787
Hpy188III	TCNNGA	2 cut(s)	276, 717
Hpy8I	GTNNAC	3 cut(s)	173, 563, 586
Hpy99I	CGWCG	6 cut(s)	143, 171, 287, 290, 293, 557
HpyAV	CCTTC	2 cut(s)	282, 624
HpyCH4III	ACNGT	6 cut(s)	127, 139, 305, 511, 583, 767
HpyCH4IV	ACGT	8 cut(s)	169, 175, 229, 285, 366, 376, 452, 588
HpyF10VI	GCNNNNNNNGC	1 cut(s)	806
HpyF3I	CTNAG	1 cut(s)	341
HpySE526I	ACGT	8 cut(s)	169, 175, 229, 285, 366, 376, 452, 588
Hsp92I	GRCGYC	2 cut(s)	169, 285
Hsp92II	CATG	2 cut(s)	422, 778
Kzo9I	GATC	1 cut(s)	430
LguI	GCTCTTC	1 cut(s)	636
LmnI	GCTCC	1 cut(s)	820
Lsp1109I	GCAGC	1 cut(s)	404
MabI	ACCWGGT	1 cut(s)	187
MaeII	ACGT	8 cut(s)	169, 175, 229, 285, 366, 376, 452, 588
MaeIII	GTNAC	6 cut(s)	29, 127, 223, 230, 367, 627
MalI	GATC	1 cut(s)	432
MboI	GATC	1 cut(s)	430
MboII	GAAGA	5 cut(s)	211, 496, 650, 653, 722
MhlI	GDGCHC	2 cut(s)	802, 817
MlyI	GAGTC	5 cut(s)	140, 259, 339, 722, 752
MmeI	TCCRAC	1 cut(s)	190
MslI	CAYNNNNRTG	2 cut(s)	158, 777
MspI	CCGG	4 cut(s)	389, 625, 632, 692
MspR9I	CCNGG	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	1 cut(s)	806
NcoI	CCATGG	1 cut(s)	418
NdeII	GATC	1 cut(s)	430
NlaIII	CATG	2 cut(s)	422, 778
NlaIV	GGNNCC	3 cut(s)	193, 800, 801
NmeAIII	GCCGAG	1 cut(s)	635
NmuCI	GTSAC	3 cut(s)	223, 230, 367
OliI	CACNNNNGTG	1 cut(s)	777
PciSI	GCTCTTC	1 cut(s)	636
PcsI	WCGNNNNNNNCGW	3 cut(s)	288, 333, 549
PflFI	GACNNNGTC	1 cut(s)	287
PinAI	ACCGGT	1 cut(s)	624
PkrI	GCNGC	3 cut(s)	314, 394, 598
PleI	GAGTC	5 cut(s)	140, 258, 338, 721, 751
PmaCI	CACGTG	2 cut(s)	176, 230
PmlI	CACGTG	2 cut(s)	176, 230
PpsI	GAGTC	5 cut(s)	140, 258, 338, 721, 751
Ppu21I	YACGTR	2 cut(s)	176, 230
Psp124BI	GAGCTC	1 cut(s)	817
Psp1406I	AACGTT	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	187
PspCI	CACGTG	2 cut(s)	176, 230
PspEI	GGTNACC	1 cut(s)	627
PspGI	CCWGG	1 cut(s)	187
PspN4I	GGNNCC	3 cut(s)	193, 800, 801
PspOMI	GGGCCC	1 cut(s)	798
PspPI	GGNCC	5 cut(s)	163, 524, 560, 798, 799
PsyI	GACNNNGTC	1 cut(s)	287
RsaI	GTAC	2 cut(s)	475, 764
RsaNI	GTAC	2 cut(s)	474, 763
RseI	CAYNNNNRTG	2 cut(s)	158, 777
SacI	GAGCTC	1 cut(s)	817
SapI	GCTCTTC	1 cut(s)	636
SatI	GCNGC	3 cut(s)	313, 393, 597
Sau3AI	GATC	1 cut(s)	430
Sau96I	GGNCC	5 cut(s)	163, 524, 560, 798, 799
SchI	GAGTC	5 cut(s)	140, 259, 339, 722, 752
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	2 cut(s)	802, 817
SexAI	ACCWGGT	1 cut(s)	187
SfcI	CTRYAG	2 cut(s)	357, 804
SinI	GGWCC	3 cut(s)	163, 524, 560
SmiMI	CAYNNNNRTG	2 cut(s)	158, 777
SmlI	CTYRAG	1 cut(s)	528
SmoI	CTYRAG	1 cut(s)	528
SstI	GAGCTC	1 cut(s)	817
StyD4I	CCNGG	1 cut(s)	187
StyI	CCWWGG	1 cut(s)	418
TaaI	ACNGT	6 cut(s)	127, 139, 305, 511, 583, 767
TaiI	ACGT	8 cut(s)	172, 178, 232, 288, 369, 379, 455, 591
TaqI	TCGA	4 cut(s)	141, 156, 264, 291
TatI	WGTACW	1 cut(s)	762
TauI	GCSGC	2 cut(s)	315, 599
TseFI	GTSAC	3 cut(s)	223, 230, 367
TseI	GCWGC	1 cut(s)	392
Tsp45I	GTSAC	3 cut(s)	223, 230, 367
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	430
Tth111I	GACNNNGTC	1 cut(s)	287
VpaK11BI	GGWCC	3 cut(s)	163, 524, 560
ZraI	GACGTC	2 cut(s)	170, 286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.