Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0013067

Physical Location & Seq

Genomic Coordinates Forward (+)

57308415 .. 57309362

Gene Structure 948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G037800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGAAAGGTGAATACGGAGGTGGTGACACCAAGAGTGAAACCCAAAACATGTTCTCGAAGCTTCACCATCATAACAACCCACAGTCTCATCCTCACCCTCACCACCCCCAGCAGCAGCAGCAGCAGTTCCACCACCATTTCTCCAACCCATTTCAGATTACGCCCCACCGAACCAGCAGCGGCACCGCCACCAAGCCCCTCGTTTCAGATCCCAACAACCCCACCGGCGGCGACGGCGCCACTATTGAAGTCGTCCGGAGGCCCAGGGGCCGCCCTCCCGGCTCCAAGAACAAGCCCAAGCCTCCCGTCATCATAACCCGCGACACCGAGCCCGCCATGAGCCCTTACATTCTTGAAGTCCCCGGCGGAAGCGACGTCGTCGACGCCGTCTCCCGATTCTGCTGCCGCAAGAACATCGGCCTCGTCATCCTCACCGGCTCCGGAACCGTCGCCAACGTTACTCTACGTCAGCCGTCCACTACTCCAGGAGCTACAGTTACCTTCCACGGCCGCTTCGACATCCTCTCGATCTCCGCCACCTTCCTTCCGCAACCGACGGCGGCCGGCCCGATCCCCAACGGCTTCACCATCTCCCTCGCCGGACCGCAGGGCCAGATCGTCGGAGGACTCGTCGCCGGGGCCTTGATAGCTGCCGGAACTGTTTACATCATCGCGGCGTCGTTCAACAGCCCTTCGTACCATCGGCTGCCGGTGGAGGACGAGGCGGCGCCCAGGAACTCGCTAGTGGGTCACGCGCCGGCACAGTCTTGTGGGATGGCCATGTACAGCTGTCACATGCCTACCGATGTTATCTGGGCTCCGACCGCAAGACAACCACCTCCTCCGCCACCCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

285

Amino Acids

30.27

Weight (kDa)

9.14

Isoelectric Point (pI)

54.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCC	PF03479	115 - 229	7.2e-20	Plants and Prokaryotes Conserved (PCC) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14490 AT1G14490 AT5G49700
fragaria_vesca	FvH4_5g35490
malus_domestica	MD08G1196300.v1.1 MD15G1384100.v1.1
prunus_persica	Prupe.1G530300_v2.0.a1
pyrus_communis	pycom08g16870
rosa_chinensis	RchiOBHm_Chr7g0236871
rosa_laevigata	RLG00000001054
rosa_multiflora	Rmu_sc0002867.1_g000011
rosa_roxburghii	Rroxscaffold_3G00224740
rosa_rugosa	Rorug07G0300400
rosa_samantha	Rh7AG455300 Rh7BG426500 Rh7CG474000 Rh7DG443300
rosa_wichuraiana	Rw7G037800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	378
AccB1I	GGYRCC	3 cut(s)	182, 236, 727
AccI	GTMKAC	1 cut(s)	381
AccII	CGCG	3 cut(s)	321, 674, 755
AccIII	TCCGGA	2 cut(s)	255, 440
AclI	AACGTT	1 cut(s)	456
AclWI	GGATC	2 cut(s)	203, 565
AcoI	YGGCCR	3 cut(s)	508, 561, 777
AcyI	GRCGYC	5 cut(s)	237, 375, 384, 677, 728
AfaI	GTAC	2 cut(s)	698, 785
AfiI	CCNNNNNNNGG	1 cut(s)	227
AflIII	ACRYGT	1 cut(s)	48
AgsI	TTSAA	3 cut(s)	248, 356, 685
AjnI	CCWGG	3 cut(s)	263, 484, 731
AluBI	AGCT	4 cut(s)	61, 491, 650, 789
AluI	AGCT	4 cut(s)	61, 491, 650, 789
Alw26I	GTCTC	2 cut(s)	90, 394
AlwI	GGATC	2 cut(s)	203, 565
Aor13HI	TCCGGA	2 cut(s)	255, 440
AoxI	GGCC	9 cut(s)	260, 268, 418, 508, 561, 565, 610, 639, 777
ApeKI	GCWGC	8 cut(s)	112, 115, 118, 121, 177, 402, 650, 706
AspLEI	GCGC	3 cut(s)	239, 730, 757
AspS9I	GGNCC	6 cut(s)	261, 268, 566, 602, 610, 639
AsuC2I	CCSGG	3 cut(s)	279, 363, 637
AsuHPI	GGTGA	7 cut(s)	20, 35, 56, 86, 92, 424, 577
AvaII	GGWCC	1 cut(s)	602
BalI	TGGCCA	1 cut(s)	779
BanI	GGYRCC	3 cut(s)	182, 236, 727
BanII	GRGCYC	3 cut(s)	333, 344, 820
BbvI	GCAGC	8 cut(s)	124, 127, 130, 133, 189, 389, 637, 693
BccI	CCATC	4 cut(s)	75, 596, 708, 769
BceAI	ACGGC	6 cut(s)	250, 371, 457, 523, 573, 595
BcgI	CGANNNNNNTGC	4 cut(s)	384, 397, 418, 431
BciT130I	CCWGG	3 cut(s)	265, 486, 733
BcnI	CCSGG	3 cut(s)	279, 363, 637
BcoDI	GTCTC	2 cut(s)	90, 394
BfaI	CTAG	1 cut(s)	743
BfmI	CTRYAG	1 cut(s)	492
BfoI	RGCGCY	2 cut(s)	240, 731
BglI	GCCNNNNNGGC	1 cut(s)	279
Bme1390I	CCNGG	6 cut(s)	265, 279, 363, 486, 637, 733
Bme18I	GGWCC	1 cut(s)	602
BmgT120I	GGNCC	6 cut(s)	261, 268, 566, 602, 610, 639
BmiI	GGNNCC	9 cut(s)	184, 238, 269, 283, 439, 445, 640, 729, 819
BmrFI	CCNGG	6 cut(s)	265, 279, 363, 486, 637, 733
BpmI	CTGGAG	1 cut(s)	468
BpuMI	CCSGG	3 cut(s)	279, 363, 637
BsaHI	GRCGYC	5 cut(s)	237, 375, 384, 677, 728
BsaJI	CCNNGG	6 cut(s)	263, 264, 361, 505, 636, 731
BsaWI	WCCGGW	2 cut(s)	255, 440
BsaXI	ACNNNNNCTCC	8 cut(s)	125, 155, 374, 404, 480, 510, 615, 645
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
Bse118I	RCCGGY	5 cut(s)	224, 434, 563, 709, 757
BseAI	TCCGGA	2 cut(s)	255, 440
BseBI	CCWGG	3 cut(s)	265, 486, 733
BseDI	CCNNGG	6 cut(s)	263, 264, 361, 505, 636, 731
BseGI	GGATG	4 cut(s)	88, 426, 519, 780
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseRI	GAGGAG	1 cut(s)	831
BseX3I	CGGCCG	2 cut(s)	508, 561
BseXI	GCAGC	8 cut(s)	124, 127, 130, 133, 189, 389, 637, 693
BseYI	CCCAGC	1 cut(s)	108
Bsh1236I	CGCG	3 cut(s)	321, 674, 755
Bsh1285I	CGRYCG	3 cut(s)	511, 564, 825
BshFI	GGCC	9 cut(s)	262, 270, 420, 510, 563, 567, 612, 641, 779
BshNI	GGYRCC	3 cut(s)	182, 236, 727
BsiEI	CGRYCG	3 cut(s)	511, 564, 825
BslFI	GGGAC	1 cut(s)	344
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmAI	GTCTC	2 cut(s)	90, 394
BsmBI	CGTCTC	1 cut(s)	394
BsmFI	GGGAC	1 cut(s)	344
BsnI	GGCC	9 cut(s)	262, 270, 420, 510, 563, 567, 612, 641, 779
Bsp1286I	GDGCHC	3 cut(s)	333, 344, 820
Bsp13I	TCCGGA	2 cut(s)	255, 440
Bsp1407I	TGTACA	1 cut(s)	783
Bsp143I	GATC	4 cut(s)	208, 528, 570, 615
BspANI	GGCC	9 cut(s)	262, 270, 420, 510, 563, 567, 612, 641, 779
BspEI	TCCGGA	2 cut(s)	255, 440
BspFNI	CGCG	3 cut(s)	321, 674, 755
BspLI	GGNNCC	9 cut(s)	184, 238, 269, 283, 439, 445, 640, 729, 819
BspPI	GGATC	2 cut(s)	203, 565
BspT107I	GGYRCC	3 cut(s)	182, 236, 727
BsrFI	RCCGGY	5 cut(s)	224, 434, 563, 709, 757
BsrGI	TGTACA	1 cut(s)	783
BssAI	RCCGGY	5 cut(s)	224, 434, 563, 709, 757
BssECI	CCNNGG	6 cut(s)	263, 264, 361, 505, 636, 731
BssMI	GATC	4 cut(s)	208, 528, 570, 615
BssNI	GRCGYC	5 cut(s)	237, 375, 384, 677, 728
Bst2UI	CCWGG	3 cut(s)	265, 486, 733
Bst4CI	ACNGT	5 cut(s)	84, 448, 496, 661, 765
BstACI	GRCGYC	5 cut(s)	237, 375, 384, 677, 728
BstAUI	TGTACA	1 cut(s)	783
BstC8I	GCNNGC	3 cut(s)	333, 565, 759
BstDSI	CCRYGG	1 cut(s)	505
BstF5I	GGATG	4 cut(s)	88, 426, 519, 780
BstFNI	CGCG	3 cut(s)	321, 674, 755
BstH2I	RGCGCY	2 cut(s)	240, 731
BstHHI	GCGC	3 cut(s)	239, 730, 757
BstKTI	GATC	4 cut(s)	211, 531, 573, 618
BstMAI	GTCTC	2 cut(s)	90, 394
BstMBI	GATC	4 cut(s)	208, 528, 570, 615
BstMCI	CGRYCG	3 cut(s)	511, 564, 825
BstMWI	GCNNNNNNNGC	6 cut(s)	118, 121, 234, 279, 647, 824
BstNI	CCWGG	3 cut(s)	265, 486, 733
BstNSI	RCATGY	2 cut(s)	52, 799
BstSCI	CCNGG	6 cut(s)	263, 277, 361, 484, 635, 731
BstSFI	CTRYAG	1 cut(s)	492
BstUI	CGCG	3 cut(s)	321, 674, 755
BstV1I	GCAGC	8 cut(s)	124, 127, 130, 133, 189, 389, 637, 693
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BstZI	CGGCCG	2 cut(s)	508, 561
BsuRI	GGCC	9 cut(s)	262, 270, 420, 510, 563, 567, 612, 641, 779
BtgI	CCRYGG	1 cut(s)	505
BtgZI	GCGATG	1 cut(s)	655
BtsCI	GGATG	4 cut(s)	88, 426, 519, 780
Cac8I	GCNNGC	3 cut(s)	333, 565, 759
CfoI	GCGC	3 cut(s)	239, 730, 757
Cfr10I	RCCGGY	5 cut(s)	224, 434, 563, 709, 757
Cfr13I	GGNCC	6 cut(s)	261, 268, 566, 602, 610, 639
CpoI	CGGWCCG	1 cut(s)	602
CseI	GACGC	2 cut(s)	392, 666
Csp6I	GTAC	2 cut(s)	697, 784
CspI	CGGWCCG	1 cut(s)	602
CviAII	CATG	4 cut(s)	49, 337, 781, 796
CviQI	GTAC	2 cut(s)	697, 784
DinI	GGCGCC	2 cut(s)	238, 729
DpnI	GATC	4 cut(s)	210, 530, 572, 617
DpnII	GATC	4 cut(s)	208, 528, 570, 615
EaeI	YGGCCR	3 cut(s)	508, 561, 777
EagI	CGGCCG	2 cut(s)	508, 561
EciI	GGCGGA	3 cut(s)	381, 523, 834
EclXI	CGGCCG	2 cut(s)	508, 561
Eco24I	GRGCYC	3 cut(s)	333, 344, 820
Eco47I	GGWCC	1 cut(s)	602
Eco52I	CGGCCG	2 cut(s)	508, 561
EcoO109I	RGGNCCY	1 cut(s)	639
EcoRII	CCWGG	3 cut(s)	263, 484, 731
EcoT38I	GRGCYC	3 cut(s)	333, 344, 820
EgeI	GGCGCC	2 cut(s)	238, 729
EheI	GGCGCC	2 cut(s)	238, 729
Esp3I	CGTCTC	1 cut(s)	394
FaeI	CATG	4 cut(s)	52, 340, 784, 799
FaiI	YATR	6 cut(s)	50, 72, 314, 338, 782, 797
FaqI	GGGAC	1 cut(s)	344
FatI	CATG	4 cut(s)	48, 336, 780, 795
FauI	CCCGC	2 cut(s)	326, 340
FblI	GTMKAC	1 cut(s)	381
FokI	GGATG	4 cut(s)	75, 413, 506, 787
FriOI	GRGCYC	3 cut(s)	333, 344, 820
FseI	GGCCGGCC	1 cut(s)	567
FspBI	CTAG	1 cut(s)	743
GlaI	GCGC	3 cut(s)	238, 729, 756
GsaI	CCCAGC	1 cut(s)	112
GsuI	CTGGAG	1 cut(s)	468
HaeII	RGCGCY	2 cut(s)	240, 731
HaeIII	GGCC	9 cut(s)	262, 270, 420, 510, 563, 567, 612, 641, 779
HgaI	GACGC	2 cut(s)	392, 666
HhaI	GCGC	3 cut(s)	239, 730, 757
Hin1I	GRCGYC	5 cut(s)	237, 375, 384, 677, 728
Hin1II	CATG	4 cut(s)	52, 340, 784, 799
Hin6I	GCGC	3 cut(s)	237, 728, 755
HinP1I	GCGC	3 cut(s)	237, 728, 755
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HindIII	AAGCTT	1 cut(s)	59
HinfI	GANTC	2 cut(s)	396, 627
HphI	GGTGA	7 cut(s)	20, 35, 56, 86, 92, 424, 577
Hpy166II	GTNNAC	3 cut(s)	382, 477, 664
Hpy188I	TCNGA	4 cut(s)	156, 208, 623, 822
Hpy188III	TCNNGA	6 cut(s)	55, 256, 353, 393, 441, 526
Hpy8I	GTNNAC	3 cut(s)	382, 477, 664
HpyAV	CCTTC	4 cut(s)	511, 550, 554, 702
HpyCH4III	ACNGT	5 cut(s)	84, 448, 496, 661, 765
HpyCH4IV	ACGT	3 cut(s)	375, 456, 466
HpyF10VI	GCNNNNNNNGC	6 cut(s)	118, 121, 234, 279, 647, 824
HpySE526I	ACGT	3 cut(s)	375, 456, 466
Hsp92I	GRCGYC	5 cut(s)	237, 375, 384, 677, 728
Hsp92II	CATG	4 cut(s)	52, 340, 784, 799
HspAI	GCGC	3 cut(s)	237, 728, 755
KasI	GGCGCC	2 cut(s)	236, 727
Kpn2I	TCCGGA	2 cut(s)	255, 440
KroI	GCCGGC	2 cut(s)	563, 757
KroNI	GCCGGC	2 cut(s)	565, 759
Kzo9I	GATC	4 cut(s)	208, 528, 570, 615
LmnI	GCTCC	4 cut(s)	287, 443, 488, 823
Lsp1109I	GCAGC	8 cut(s)	124, 127, 130, 133, 189, 389, 637, 693
MaeI	CTAG	1 cut(s)	743
MaeII	ACGT	3 cut(s)	375, 456, 466
MaeIII	GTNAC	5 cut(s)	23, 457, 496, 749, 791
MalI	GATC	4 cut(s)	210, 530, 572, 617
MboI	GATC	4 cut(s)	208, 528, 570, 615
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	3 cut(s)	333, 344, 820
MlsI	TGGCCA	1 cut(s)	779
MluNI	TGGCCA	1 cut(s)	779
Mly113I	GGCGCC	2 cut(s)	237, 728
MlyI	GAGTC	1 cut(s)	621
MmeI	TCCRAC	3 cut(s)	168, 601, 845
Mox20I	TGGCCA	1 cut(s)	779
MroI	TCCGGA	2 cut(s)	255, 440
MroNI	GCCGGC	2 cut(s)	563, 757
MscI	TGGCCA	1 cut(s)	779
Msp20I	TGGCCA	1 cut(s)	779
MspA1I	CMGCKG	2 cut(s)	180, 789
MspR9I	CCNGG	6 cut(s)	265, 279, 363, 486, 637, 733
MvaI	CCWGG	3 cut(s)	265, 486, 733
MvnI	CGCG	3 cut(s)	321, 674, 755
MwoI	GCNNNNNNNGC	6 cut(s)	118, 121, 234, 279, 647, 824
NaeI	GCCGGC	2 cut(s)	565, 759
NarI	GGCGCC	2 cut(s)	237, 728
NciI	CCSGG	3 cut(s)	279, 363, 637
NdeII	GATC	4 cut(s)	208, 528, 570, 615
NgoMIV	GCCGGC	2 cut(s)	563, 757
NlaIII	CATG	4 cut(s)	52, 340, 784, 799
NlaIV	GGNNCC	9 cut(s)	184, 238, 269, 283, 439, 445, 640, 729, 819
NmuCI	GTSAC	3 cut(s)	23, 749, 791
NspI	RCATGY	2 cut(s)	52, 799
PasI	CCCWGGG	1 cut(s)	264
PciI	ACATGT	1 cut(s)	48
PcsI	WCGNNNNNNNCGW	3 cut(s)	384, 513, 627
PdiI	GCCGGC	2 cut(s)	565, 759
PfeI	GAWTC	1 cut(s)	396
PflFI	GACNNNGTC	2 cut(s)	377, 386
PfoI	TCCNGGA	1 cut(s)	484
PleI	GAGTC	1 cut(s)	621
PluTI	GGCGCC	2 cut(s)	240, 731
PpsI	GAGTC	1 cut(s)	621
PscI	ACATGT	1 cut(s)	48
Psp1406I	AACGTT	1 cut(s)	456
Psp6I	CCWGG	3 cut(s)	263, 484, 731
PspFI	CCCAGC	1 cut(s)	108
PspGI	CCWGG	3 cut(s)	263, 484, 731
PspN4I	GGNNCC	9 cut(s)	184, 238, 269, 283, 439, 445, 640, 729, 819
PspPI	GGNCC	6 cut(s)	261, 268, 566, 602, 610, 639
PsuI	RGATCY	1 cut(s)	208
PsyI	GACNNNGTC	2 cut(s)	377, 386
PvuII	CAGCTG	1 cut(s)	789
RigI	GGCCGGCC	1 cut(s)	567
RsaI	GTAC	2 cut(s)	698, 785
RsaNI	GTAC	2 cut(s)	697, 784
Rsr2I	CGGWCCG	1 cut(s)	602
RsrII	CGGWCCG	1 cut(s)	602
SalI	GTCGAC	1 cut(s)	380
Sau3AI	GATC	4 cut(s)	208, 528, 570, 615
Sau96I	GGNCC	6 cut(s)	261, 268, 566, 602, 610, 639
SchI	GAGTC	1 cut(s)	621
ScrFI	CCNGG	6 cut(s)	265, 279, 363, 486, 637, 733
SduI	GDGCHC	3 cut(s)	333, 344, 820
SfcI	CTRYAG	1 cut(s)	492
SfoI	GGCGCC	2 cut(s)	238, 729
SgrAI	CRCCGGYG	1 cut(s)	224
SgrDI	CGTCGACG	1 cut(s)	380
SinI	GGWCC	1 cut(s)	602
SspDI	GGCGCC	2 cut(s)	236, 727
SspMI	CTAG	1 cut(s)	743
StyD4I	CCNGG	6 cut(s)	263, 277, 361, 484, 635, 731
TaaI	ACNGT	5 cut(s)	84, 448, 496, 661, 765
TaiI	ACGT	3 cut(s)	378, 459, 469
TaqI	TCGA	4 cut(s)	56, 381, 516, 527
TatI	WGTACW	1 cut(s)	783
TauI	GCSGC	8 cut(s)	183, 231, 273, 408, 513, 563, 677, 728
TfiI	GAWTC	1 cut(s)	396
TseFI	GTSAC	3 cut(s)	23, 749, 791
TseI	GCWGC	8 cut(s)	112, 115, 118, 121, 177, 402, 650, 706
Tsp45I	GTSAC	3 cut(s)	23, 749, 791
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	30
Tth111I	GACNNNGTC	2 cut(s)	377, 386
VpaK11BI	GGWCC	1 cut(s)	602
XceI	RCATGY	2 cut(s)	52, 799
XmiI	GTMKAC	1 cut(s)	381
XspI	CTAG	1 cut(s)	743
ZraI	GACGTC	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.