Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011955

Physical Location & Seq

Genomic Coordinates Reverse (-)

5458398 .. 5460359

Gene Structure 1962 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G15880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGATGTGCCTAGCTCTTGGGATGCTTTACGGAAACAGGCTAGAAAGATTGAAGCTCAGCTTGACGAGCAGATGCATTCATATCGTAGACTTGTTTCCACAAAGGCTTTATCAAAATCAGATGGTAATGAGAGTGATCTTGAAGCTGGGATTGACTTACTTCTTAGGCAACTGCAACAAGTTAATGCTCAGATGCAAGCATGGGTATCTTCTGGTGGGTCAGAAATGGTCTCCCATACTTTAACTCGACATCAAGAGATCCTTCAAGATCTGACACAGGAGTTTTATCGACACCGCTCCAGTCTTAGAGCAAAACAAGAGCATGCTTCACTTCTTGAGGACTTTAGAGAATTTGATCGGACTAGATTAGATTTAGAAGATGGATATGGGTCTGAACAAGCCCTGATCAAGGAACATATGGGAATCAACCGCAATACAGCTCAGATGGACGGTGTCATTTCACAAGCTCAGGCAACACTCGGTACGCTTGTGTTTCAACGTTCAACTTTTGGAGGCATCAACTCAAAGCTTAGCAATGTCGCCAGCCGTCTACCTACGGTGAACACTATTCTGGCAGCGATAAAGAGGAAAAAGTCGATGGATACAATCATTCTTTCACTCGTTGCGGCTGTATGCACATTTCTCATATTCATTTACTGGATAACCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005797 GO:0005801 GO:0006810 GO:0006888 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031201 GO:0031984 GO:0031985 GO:0032879 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048209 GO:0048284 GO:0050789 GO:0050794 GO:0051049 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060341 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0071840 GO:0090174 GO:0098588 GO:0098791 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

P22_AR_C V-SNARE_C

Protein Analysis

223

Amino Acids

25.21

Weight (kDa)

7.9

Isoelectric Point (pI)

48.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE_C	PF12352	134 - 198	8.8e-20	Snare region anchored in the vesicle membrane C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15880
fragaria_vesca	FvH4_6g28830
malus_domestica	MD14G1001700.v1.1
prunus_persica	Prupe.3G096500_v2.0.a1 Prupe.3G096500_v2.0.a1 Prupe.3G096500_v2.0.a1
pyrus_communis	pycom12g00170 pycom49g00130
rosa_chinensis	RchiOBHm_Chr2g0133301 RchiOBHm_Chr2g0133361
rosa_laevigata	RLG00000019325
rosa_multiflora	Rmu_sc0003874.1_g000012
rosa_roxburghii	Rroxscaffold_2G00111230
rosa_rugosa	Rorug02G0311200
rosa_samantha	Rh2AG363700 Rh2BG369500 Rh2CG346900 Rh2DG386400
rosa_wichuraiana	Rw2G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	297
AccI	GTMKAC	2 cut(s)	88, 550
AciI	CCGC	3 cut(s)	295, 430, 626
AclI	AACGTT	1 cut(s)	499
AclWI	GGATC	1 cut(s)	253
AcsI	RAATTY	1 cut(s)	350
AfaI	GTAC	1 cut(s)	484
AfiI	CCNNNNNNNGG	1 cut(s)	409
AgsI	TTSAA	5 cut(s)	53, 143, 266, 497, 504
AluBI	AGCT	7 cut(s)	15, 56, 61, 146, 440, 467, 529
AluI	AGCT	7 cut(s)	15, 56, 61, 146, 440, 467, 529
Alw26I	GTCTC	1 cut(s)	235
AlwI	GGATC	1 cut(s)	253
ApeKI	GCWGC	1 cut(s)	575
ApoI	RAATTY	1 cut(s)	350
AsuHPI	GGTGA	1 cut(s)	571
BaeI	ACNNNNGTAYC	2 cut(s)	474, 507
BbvI	GCAGC	1 cut(s)	587
BccI	CCATC	4 cut(s)	116, 374, 439, 592
BceAI	ACGGC	1 cut(s)	531
BcgI	CGANNNNNNTGC	2 cut(s)	65, 99
BciVI	GTATCC	1 cut(s)	595
BclI	TGATCA	1 cut(s)	405
BcoDI	GTCTC	1 cut(s)	235
BfaI	CTAG	3 cut(s)	12, 42, 363
BfuI	GTATCC	1 cut(s)	595
BglII	AGATCT	1 cut(s)	268
BisI	GCNGC	2 cut(s)	576, 627
BlpI	GCTNAGC	2 cut(s)	57, 530
BlsI	GCNGC	2 cut(s)	577, 628
BmsI	GCATC	4 cut(s)	13, 63, 183, 525
BpmI	CTGGAG	1 cut(s)	283
Bpu10I	CCTNAGC	1 cut(s)	468
Bpu1102I	GCTNAGC	2 cut(s)	57, 530
BpuEI	CTTGAG	1 cut(s)	356
BsaI	GGTCTC	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	1 cut(s)	409
Bse1I	ACTGG	2 cut(s)	300, 662
Bse3DI	GCAATG	1 cut(s)	541
BseGI	GGATG	2 cut(s)	10, 28
BseLI	CCNNNNNNNGG	1 cut(s)	409
BseMI	GCAATG	1 cut(s)	541
BseMII	CTCAG	4 cut(s)	71, 203, 455, 482
BseNI	ACTGG	2 cut(s)	300, 662
BseXI	GCAGC	1 cut(s)	587
BseYI	CCCAGC	1 cut(s)	146
BslI	CCNNNNNNNGG	1 cut(s)	409
BsmAI	GTCTC	1 cut(s)	235
BsmI	GAATGC	1 cut(s)	76
Bso31I	GGTCTC	1 cut(s)	235
Bsp143I	GATC	5 cut(s)	136, 258, 268, 355, 405
Bsp1720I	GCTNAGC	2 cut(s)	57, 530
BspACI	CCGC	3 cut(s)	295, 430, 626
BspCNI	CTCAG	4 cut(s)	70, 202, 454, 481
BspPI	GGATC	1 cut(s)	253
BspTNI	GGTCTC	1 cut(s)	235
BsrBI	CCGCTC	1 cut(s)	297
BsrDI	GCAATG	1 cut(s)	541
BsrI	ACTGG	2 cut(s)	300, 662
BssMI	GATC	5 cut(s)	136, 258, 268, 355, 405
Bst4CI	ACNGT	2 cut(s)	452, 559
BstC8I	GCNNGC	3 cut(s)	198, 324, 544
BstDEI	CTNAG	7 cut(s)	57, 164, 189, 305, 441, 468, 530
BstENI	CCTNNNNNAGG	1 cut(s)	407
BstF5I	GGATG	2 cut(s)	10, 28
BstKTI	GATC	5 cut(s)	139, 261, 271, 358, 408
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	5 cut(s)	136, 258, 268, 355, 405
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstNSI	RCATGY	1 cut(s)	326
BstV1I	GCAGC	1 cut(s)	587
BstX2I	RGATCY	2 cut(s)	258, 268
BstYI	RGATCY	2 cut(s)	258, 268
BsuI	GTATCC	1 cut(s)	595
BtsCI	GGATG	2 cut(s)	10, 28
Cac8I	GCNNGC	3 cut(s)	198, 324, 544
Csp6I	GTAC	1 cut(s)	483
CviAII	CATG	2 cut(s)	201, 323
CviQI	GTAC	1 cut(s)	483
DdeI	CTNAG	7 cut(s)	57, 164, 189, 305, 441, 468, 530
DpnI	GATC	5 cut(s)	138, 260, 270, 357, 407
DpnII	GATC	5 cut(s)	136, 258, 268, 355, 405
Eco31I	GGTCTC	1 cut(s)	235
EcoNI	CCTNNNNNAGG	1 cut(s)	407
EcoT22I	ATGCAT	1 cut(s)	78
FaeI	CATG	2 cut(s)	204, 326
FaiI	YATR	9 cut(s)	82, 202, 237, 324, 387, 417, 419, 634, 647
FalI	AAGNNNNNCTT	4 cut(s)	45, 77, 246, 278
FatI	CATG	2 cut(s)	200, 322
FauNDI	CATATG	1 cut(s)	417
FbaI	TGATCA	1 cut(s)	405
FblI	GTMKAC	2 cut(s)	88, 550
Fnu4HI	GCNGC	2 cut(s)	576, 627
FokI	GGATG	2 cut(s)	17, 35
Fsp4HI	GCNGC	2 cut(s)	576, 627
FspBI	CTAG	3 cut(s)	12, 42, 363
GluI	GCNGC	2 cut(s)	576, 627
GsaI	CCCAGC	1 cut(s)	150
GsuI	CTGGAG	1 cut(s)	283
Hin1II	CATG	2 cut(s)	204, 326
HindIII	AAGCTT	1 cut(s)	527
HinfI	GANTC	1 cut(s)	423
HphI	GGTGA	1 cut(s)	571
Hpy166II	GTNNAC	3 cut(s)	89, 551, 562
Hpy188I	TCNGA	7 cut(s)	121, 192, 223, 273, 360, 394, 444
Hpy188III	TCNNGA	4 cut(s)	140, 254, 266, 335
Hpy8I	GTNNAC	3 cut(s)	89, 551, 562
HpyAV	CCTTC	1 cut(s)	272
HpyCH4III	ACNGT	2 cut(s)	452, 559
HpyCH4IV	ACGT	1 cut(s)	499
HpyCH4V	TGCA	4 cut(s)	76, 175, 196, 636
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
HpyF3I	CTNAG	7 cut(s)	57, 164, 189, 305, 441, 468, 530
HpySE526I	ACGT	1 cut(s)	499
Hsp92II	CATG	2 cut(s)	204, 326
Ksp22I	TGATCA	1 cut(s)	405
Kzo9I	GATC	5 cut(s)	136, 258, 268, 355, 405
LmnI	GCTCC	1 cut(s)	302
Lsp1109I	GCAGC	1 cut(s)	587
LweI	GCATC	4 cut(s)	13, 63, 183, 525
MaeI	CTAG	3 cut(s)	12, 42, 363
MaeII	ACGT	1 cut(s)	499
MalI	GATC	5 cut(s)	138, 260, 270, 357, 407
MbiI	CCGCTC	1 cut(s)	297
MboI	GATC	5 cut(s)	136, 258, 268, 355, 405
MboII	GAAGA	2 cut(s)	201, 389
MflI	RGATCY	2 cut(s)	258, 268
MluCI	AATT	1 cut(s)	350
MnlI	CCTC	3 cut(s)	331, 506, 579
Mph1103I	ATGCAT	1 cut(s)	78
MseI	TTAA	2 cut(s)	183, 242
Mva1269I	GAATGC	1 cut(s)	76
MwoI	GCNNNNNNNGC	1 cut(s)	67
NdeI	CATATG	1 cut(s)	417
NdeII	GATC	5 cut(s)	136, 258, 268, 355, 405
NlaIII	CATG	2 cut(s)	204, 326
NsiI	ATGCAT	1 cut(s)	78
NspI	RCATGY	1 cut(s)	326
PaeI	GCATGC	1 cut(s)	326
PctI	GAATGC	1 cut(s)	76
PfeI	GAWTC	1 cut(s)	423
PflFI	GACNNNGTC	1 cut(s)	452
PkrI	GCNGC	2 cut(s)	577, 628
Psp1406I	AACGTT	1 cut(s)	499
PspFI	CCCAGC	1 cut(s)	146
PsuI	RGATCY	2 cut(s)	258, 268
PsyI	GACNNNGTC	1 cut(s)	452
RsaI	GTAC	1 cut(s)	484
RsaNI	GTAC	1 cut(s)	483
SaqAI	TTAA	2 cut(s)	183, 242
SatI	GCNGC	2 cut(s)	576, 627
Sau3AI	GATC	5 cut(s)	136, 258, 268, 355, 405
SetI	ASST	9 cut(s)	17, 58, 63, 148, 442, 469, 502, 531, 556
SfaNI	GCATC	4 cut(s)	13, 63, 183, 525
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
SphI	GCATGC	1 cut(s)	326
Sse9I	AATT	1 cut(s)	350
SsiI	CCGC	3 cut(s)	295, 430, 626
SspMI	CTAG	3 cut(s)	12, 42, 363
TaaI	ACNGT	2 cut(s)	452, 559
TaiI	ACGT	1 cut(s)	502
TaqI	TCGA	3 cut(s)	247, 289, 596
TasI	AATT	1 cut(s)	350
TauI	GCSGC	1 cut(s)	629
TfiI	GAWTC	1 cut(s)	423
Tru1I	TTAA	2 cut(s)	183, 242
Tru9I	TTAA	2 cut(s)	183, 242
TseI	GCWGC	1 cut(s)	575
TspDTI	ATGAA	2 cut(s)	69, 640
TspGWI	ACGGA	1 cut(s)	46
Tth111I	GACNNNGTC	1 cut(s)	452
XagI	CCTNNNNNAGG	1 cut(s)	407
XapI	RAATTY	1 cut(s)	350
XceI	RCATGY	1 cut(s)	326
XmiI	GTMKAC	2 cut(s)	88, 550
XspI	CTAG	3 cut(s)	12, 42, 363
Zsp2I	ATGCAT	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.