Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0011955

Physical Location & Seq

Genomic Coordinates Reverse (-)

7271908 .. 7277274

Gene Structure 5367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G096500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGAAGTGCCAAGCTCATGGGACGCGCTTCGCAAACAGGCAAGGAAAATTGAAGCTCAGTTGGATGAGCTGATGCATTCTTATCGTAAGTTTGTCTCTGCAAAGGGTACTGCAAAATTTGACACTGCAGAGAATGATCTTGAATCTGGGATAGATAGACTATTAAAGCAACTGCAACAAGTAAATTCGCAAATGCAAGCATGGGTATCATCAGGAGGATCAGAAATGGTTTCACATACCTTGACTAGACATCAAGAAATTTTTCAAGATCTCACTCAGGAGTTCTATCGTCTCCGCTCCAGCTTTAGAGCTAAGCAAGAGCATGCTTCACTCCTTGAGGATTTTAGGGAGTTTGATCGAACAAGAGTAGATTTGGAAGATGGTGTTGGCTCTGCAGAAAATGCTCTCCTTAAAGAGCATGCTGCTGTTAGTCGAAATACAGGACAGATGGATACTGTAATCTCTCAAGCTCAAGCAACACTCGGTACGCTTGTTCTTCAACGTTCAACTTTTGGTGGTATTAATTCAAAGCTCAGCAACATTGGCAGCCGCCTTCCATCGGTAAATCACATCCTTGCTGCTATAAAGCGTAAAAAGTCCATGGATACCATCATTCTTTCTCTTGTCGCTTCCGTATGCACATTTTTAATATTTATCTACTGGTTGACGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005797 GO:0005801 GO:0006810 GO:0006888 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031201 GO:0031984 GO:0031985 GO:0032879 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048209 GO:0048284 GO:0050789 GO:0050794 GO:0051049 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060341 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0071840 GO:0090174 GO:0098588 GO:0098791 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

V-SNARE_C

Protein Analysis

225

Amino Acids

25.25

Weight (kDa)

8.67

Isoelectric Point (pI)

46.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15880
fragaria_vesca	FvH4_6g28830
malus_domestica	MD14G1001700.v1.1
prunus_persica	Prupe.3G096500_v2.0.a1 Prupe.3G096500_v2.0.a1 Prupe.3G096500_v2.0.a1
pyrus_communis	pycom12g00170 pycom49g00130
rosa_chinensis	RchiOBHm_Chr2g0133301 RchiOBHm_Chr2g0133361
rosa_laevigata	RLG00000019325
rosa_multiflora	Rmu_sc0003874.1_g000012
rosa_roxburghii	Rroxscaffold_2G00111230
rosa_rugosa	Rorug02G0311200
rosa_samantha	Rh2AG363700 Rh2BG369500 Rh2CG346900 Rh2DG386400
rosa_wichuraiana	Rw2G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	297
AccII	CGCG	1 cut(s)	26
AciI	CCGC	2 cut(s)	295, 550
AclI	AACGTT	1 cut(s)	502
AclWI	GGATC	1 cut(s)	226
AcsI	RAATTY	3 cut(s)	116, 184, 258
AfaI	GTAC	2 cut(s)	109, 487
AfiI	CCNNNNNNNGG	1 cut(s)	559
AgsI	TTSAA	6 cut(s)	53, 143, 266, 500, 507, 528
AjuI	GAANNNNNNNTTGG	2 cut(s)	369, 401
AluBI	AGCT	7 cut(s)	15, 56, 70, 303, 311, 470, 532
AluI	AGCT	7 cut(s)	15, 56, 70, 303, 311, 470, 532
Alw26I	GTCTC	2 cut(s)	100, 296
AlwI	GGATC	1 cut(s)	226
ApeKI	GCWGC	3 cut(s)	422, 546, 578
ApoI	RAATTY	3 cut(s)	116, 184, 258
AseI	ATTAAT	1 cut(s)	522
Asp700I	GAANNNNTTC	1 cut(s)	261
AspLEI	GCGC	1 cut(s)	28
BaeI	ACNNNNGTAYC	2 cut(s)	477, 510
BbvI	GCAGC	3 cut(s)	409, 558, 565
BccI	CCATC	4 cut(s)	374, 442, 565, 617
BcgI	CGANNNNNNTGC	2 cut(s)	65, 99
BciVI	GTATCC	2 cut(s)	445, 598
BcoDI	GTCTC	2 cut(s)	100, 296
BfaI	CTAG	1 cut(s)	246
BfmI	CTRYAG	2 cut(s)	126, 393
BfuI	GTATCC	2 cut(s)	445, 598
BglII	AGATCT	1 cut(s)	268
BisI	GCNGC	4 cut(s)	423, 547, 550, 579
BlpI	GCTNAGC	2 cut(s)	312, 533
BlsI	GCNGC	4 cut(s)	424, 548, 551, 580
BmsI	GCATC	1 cut(s)	63
BpmI	CTGGAG	1 cut(s)	283
Bpu1102I	GCTNAGC	2 cut(s)	312, 533
BpuEI	CTTGAG	3 cut(s)	356, 450, 456
BsaJI	CCNNGG	1 cut(s)	600
Bsc4I	CCNNNNNNNGG	1 cut(s)	559
Bse1I	ACTGG	1 cut(s)	665
BseDI	CCNNGG	1 cut(s)	600
BseGI	GGATG	2 cut(s)	70, 570
BseLI	CCNNNNNNNGG	1 cut(s)	559
BseMII	CTCAG	3 cut(s)	71, 290, 547
BseNI	ACTGG	1 cut(s)	665
BseXI	GCAGC	3 cut(s)	409, 558, 565
Bsh1236I	CGCG	1 cut(s)	26
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	559
BsmAI	GTCTC	2 cut(s)	100, 296
BsmBI	CGTCTC	1 cut(s)	296
BsmFI	GGGAC	1 cut(s)	35
BsmI	GAATGC	1 cut(s)	76
Bsp143I	GATC	4 cut(s)	136, 218, 268, 355
Bsp1720I	GCTNAGC	2 cut(s)	312, 533
Bsp19I	CCATGG	1 cut(s)	600
BspACI	CCGC	2 cut(s)	295, 550
BspCNI	CTCAG	3 cut(s)	70, 289, 546
BspFNI	CGCG	1 cut(s)	26
BspMAI	CTGCAG	2 cut(s)	130, 397
BspPI	GGATC	1 cut(s)	226
BsrBI	CCGCTC	1 cut(s)	297
BsrI	ACTGG	1 cut(s)	665
BssECI	CCNNGG	1 cut(s)	600
BssMI	GATC	4 cut(s)	136, 218, 268, 355
BssT1I	CCWWGG	1 cut(s)	600
Bst4CI	ACNGT	1 cut(s)	457
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstC8I	GCNNGC	3 cut(s)	198, 324, 420
BstDEI	CTNAG	4 cut(s)	57, 276, 312, 533
BstDSI	CCRYGG	1 cut(s)	600
BstF5I	GGATG	2 cut(s)	70, 570
BstFNI	CGCG	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	4 cut(s)	139, 221, 271, 358
BstMAI	GTCTC	2 cut(s)	100, 296
BstMBI	GATC	4 cut(s)	136, 218, 268, 355
BstMWI	GCNNNNNNNGC	2 cut(s)	401, 543
BstNSI	RCATGY	2 cut(s)	326, 422
BstSFI	CTRYAG	2 cut(s)	126, 393
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	3 cut(s)	409, 558, 565
BstX2I	RGATCY	1 cut(s)	268
BstXI	CCANNNNNNTGG	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	268
BsuI	GTATCC	2 cut(s)	445, 598
BtgI	CCRYGG	1 cut(s)	600
BtsCI	GGATG	2 cut(s)	70, 570
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	123
Cac8I	GCNNGC	3 cut(s)	198, 324, 420
CfoI	GCGC	1 cut(s)	28
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	2 cut(s)	108, 486
CviAII	CATG	5 cut(s)	18, 201, 323, 419, 601
CviJI	RGCY	9 cut(s)	15, 56, 70, 303, 311, 390, 470, 532, 549
CviKI_1	RGCY	9 cut(s)	15, 56, 70, 303, 311, 390, 470, 532, 549
CviQI	GTAC	2 cut(s)	108, 486
DdeI	CTNAG	4 cut(s)	57, 276, 312, 533
DpnI	GATC	4 cut(s)	138, 220, 270, 357
DpnII	GATC	4 cut(s)	136, 218, 268, 355
Eco130I	CCWWGG	1 cut(s)	600
EcoT14I	CCWWGG	1 cut(s)	600
EcoT22I	ATGCAT	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	600
Esp3I	CGTCTC	1 cut(s)	296
FaeI	CATG	5 cut(s)	21, 204, 326, 422, 604
FaiI	YATR	8 cut(s)	19, 202, 237, 324, 420, 584, 602, 637
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	5 cut(s)	17, 200, 322, 418, 600
Fnu4HI	GCNGC	4 cut(s)	423, 547, 550, 579
FokI	GGATG	2 cut(s)	77, 557
Fsp4HI	GCNGC	4 cut(s)	423, 547, 550, 579
FspBI	CTAG	1 cut(s)	246
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	4 cut(s)	423, 547, 550, 579
GsuI	CTGGAG	1 cut(s)	283
HgaI	GACGC	1 cut(s)	32
HhaI	GCGC	1 cut(s)	28
Hin1II	CATG	5 cut(s)	21, 204, 326, 422, 604
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HincII	GTYRAC	1 cut(s)	666
HindII	GTYRAC	1 cut(s)	666
HinfI	GANTC	1 cut(s)	143
Hpy166II	GTNNAC	1 cut(s)	666
Hpy188I	TCNGA	1 cut(s)	223
Hpy188III	TCNNGA	5 cut(s)	140, 213, 254, 266, 278
Hpy8I	GTNNAC	1 cut(s)	666
HpyAV	CCTTC	1 cut(s)	563
HpyCH4III	ACNGT	1 cut(s)	457
HpyCH4IV	ACGT	1 cut(s)	502
HpyCH4V	TGCA	8 cut(s)	76, 101, 113, 128, 175, 196, 395, 639
HpyF10VI	GCNNNNNNNGC	2 cut(s)	401, 543
HpyF3I	CTNAG	4 cut(s)	57, 276, 312, 533
HpySE526I	ACGT	1 cut(s)	502
Hsp92II	CATG	5 cut(s)	21, 204, 326, 422, 604
HspAI	GCGC	1 cut(s)	26
Kzo9I	GATC	4 cut(s)	136, 218, 268, 355
LmnI	GCTCC	1 cut(s)	302
LpnPI	CCDG	7 cut(s)	23, 132, 198, 263, 313, 426, 646
Lsp1109I	GCAGC	3 cut(s)	409, 558, 565
LweI	GCATC	1 cut(s)	63
MaeI	CTAG	1 cut(s)	246
MaeII	ACGT	1 cut(s)	502
MalI	GATC	4 cut(s)	138, 220, 270, 357
MbiI	CCGCTC	1 cut(s)	297
MboI	GATC	4 cut(s)	136, 218, 268, 355
MboII	GAAGA	2 cut(s)	389, 488
MflI	RGATCY	1 cut(s)	268
MluCI	AATT	5 cut(s)	48, 116, 184, 258, 523
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	2 cut(s)	209, 331
Mph1103I	ATGCAT	1 cut(s)	78
MroXI	GAANNNNTTC	1 cut(s)	261
MseI	TTAA	4 cut(s)	164, 411, 522, 647
Mva1269I	GAATGC	1 cut(s)	76
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	2 cut(s)	401, 543
NcoI	CCATGG	1 cut(s)	600
NdeII	GATC	4 cut(s)	136, 218, 268, 355
NlaIII	CATG	5 cut(s)	21, 204, 326, 422, 604
NsiI	ATGCAT	1 cut(s)	78
NspI	RCATGY	2 cut(s)	326, 422
PaeI	GCATGC	2 cut(s)	326, 422
PctI	GAATGC	1 cut(s)	76
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	143
PkrI	GCNGC	4 cut(s)	424, 548, 551, 580
PshBI	ATTAAT	1 cut(s)	522
Psp1406I	AACGTT	1 cut(s)	502
PstI	CTGCAG	2 cut(s)	130, 397
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	2 cut(s)	109, 487
RsaNI	GTAC	2 cut(s)	108, 486
SaqAI	TTAA	4 cut(s)	164, 411, 522, 647
SatI	GCNGC	4 cut(s)	423, 547, 550, 579
Sau3AI	GATC	4 cut(s)	136, 218, 268, 355
SetI	ASST	9 cut(s)	17, 58, 72, 242, 305, 313, 472, 505, 534
SfaNI	GCATC	1 cut(s)	63
SfcI	CTRYAG	2 cut(s)	126, 393
SmlI	CTYRAG	3 cut(s)	335, 465, 471
SmoI	CTYRAG	3 cut(s)	335, 465, 471
SphI	GCATGC	2 cut(s)	326, 422
Sse9I	AATT	5 cut(s)	48, 116, 184, 258, 523
SsiI	CCGC	2 cut(s)	295, 550
SspI	AATATT	1 cut(s)	651
SspMI	CTAG	1 cut(s)	246
StyI	CCWWGG	1 cut(s)	600
TaaI	ACNGT	1 cut(s)	457
TaiI	ACGT	1 cut(s)	505
TaqI	TCGA	2 cut(s)	358, 433
TasI	AATT	5 cut(s)	48, 116, 184, 258, 523
TauI	GCSGC	1 cut(s)	552
TfiI	GAWTC	1 cut(s)	143
Tru1I	TTAA	4 cut(s)	164, 411, 522, 647
Tru9I	TTAA	4 cut(s)	164, 411, 522, 647
TscAI	CASTG	1 cut(s)	130
TseI	GCWGC	3 cut(s)	422, 546, 578
TspGWI	ACGGA	1 cut(s)	622
TspRI	CASTG	1 cut(s)	130
VspI	ATTAAT	1 cut(s)	522
XapI	RAATTY	3 cut(s)	116, 184, 258
XceI	RCATGY	2 cut(s)	326, 422
XmnI	GAANNNNTTC	1 cut(s)	261
XspI	CTAG	1 cut(s)	246
Zsp2I	ATGCAT	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.