Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0011955

Physical Location & Seq

Genomic Coordinates Reverse (-)

35804220 .. 35806330

Gene Structure 2111 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00111230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGATGTGCCAAGCTCATGGGACGCGCTTCGCAAACAGGCTAGGAAACTTGAAGCTCAGTTGGATGAACAGATGAATTCTTATCGTAAGTTTGTCTCTGCAAAGGGTTCTGTCAACTTTGATGCTGCTGATAATGATCTTGAATCTGGGATAGACCGACTATTAAAGCAACTCCAACAAGTAAATTTACAGATGCAAGCATGGGTATCATCAGGAGGATCAGAAATGGTTTCTCATACCTTGACTAGACATCAAGAGATTCTTCAAGATCTCACTCAGGAATTTTATCGTCTCCGCTCCAGCCTTAGAGCTAAGCAGGAGCACGCTTCACTACTTGAGGATTTTAGGGAGTTTGATCGAACAAGAGTAGACTTGGAAGCTGGTGGAGATTCTGCAGAAAACGCTCTCCTGAAAGAACATGCTTCTGTTAGCCGAAGTACAGGACAGATGGATACTGTGATCTCTCAAGCTCAAGCAACTCTGGGTGCACTTGTCCTTCAACGTTCAACATTTGGCGGTATTAACTCAAAGCTCAGCAATATTGGCAGCCGCCTTCCAACGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005797 GO:0005801 GO:0006810 GO:0006888 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031201 GO:0031984 GO:0031985 GO:0032879 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048209 GO:0048284 GO:0050789 GO:0050794 GO:0051049 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060341 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0071840 GO:0090174 GO:0098588 GO:0098791 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

V-SNARE_C

Protein Analysis

188

Amino Acids

20.95

Weight (kDa)

5.82

Isoelectric Point (pI)

48.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE_C	PF12352	135 - 188	6.7e-13	Snare region anchored in the vesicle membrane C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0011955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15880
fragaria_vesca	FvH4_6g28830
malus_domestica	MD14G1001700.v1.1
prunus_persica	Prupe.3G096500_v2.0.a1 Prupe.3G096500_v2.0.a1 Prupe.3G096500_v2.0.a1
pyrus_communis	pycom12g00170 pycom49g00130
rosa_chinensis	RchiOBHm_Chr2g0133301 RchiOBHm_Chr2g0133361
rosa_laevigata	RLG00000019325
rosa_multiflora	Rmu_sc0003874.1_g000012
rosa_roxburghii	Rroxscaffold_2G00111230
rosa_rugosa	Rorug02G0311200
rosa_samantha	Rh2AG363700 Rh2BG369500 Rh2CG346900 Rh2DG386400
rosa_wichuraiana	Rw2G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	297
AccI	GTMKAC	1 cut(s)	369
AccII	CGCG	1 cut(s)	26
AciI	CCGC	3 cut(s)	295, 516, 550
AclI	AACGTT	1 cut(s)	502
AclWI	GGATC	1 cut(s)	226
AcsI	RAATTY	3 cut(s)	76, 184, 281
AfaI	GTAC	1 cut(s)	439
AfiI	CCNNNNNNNGG	1 cut(s)	559
AgsI	TTSAA	5 cut(s)	53, 143, 266, 500, 507
AluBI	AGCT	6 cut(s)	15, 56, 311, 380, 470, 532
AluI	AGCT	6 cut(s)	15, 56, 311, 380, 470, 532
Alw21I	GWGCWC	2 cut(s)	324, 490
Alw26I	GTCTC	2 cut(s)	100, 296
Alw44I	GTGCAC	1 cut(s)	486
AlwI	GGATC	1 cut(s)	226
ApaLI	GTGCAC	1 cut(s)	486
ApeKI	GCWGC	2 cut(s)	125, 546
ApoI	RAATTY	3 cut(s)	76, 184, 281
AspLEI	GCGC	1 cut(s)	28
BaeGI	GKGCMC	1 cut(s)	490
Bbv12I	GWGCWC	2 cut(s)	324, 490
BbvI	GCAGC	2 cut(s)	112, 558
BccI	CCATC	1 cut(s)	442
BciVI	GTATCC	1 cut(s)	445
BcoDI	GTCTC	2 cut(s)	100, 296
BfaI	CTAG	2 cut(s)	42, 246
BfmI	CTRYAG	1 cut(s)	393
BfuI	GTATCC	1 cut(s)	445
BglII	AGATCT	1 cut(s)	268
BisI	GCNGC	3 cut(s)	126, 547, 550
BlpI	GCTNAGC	2 cut(s)	312, 533
BlsI	GCNGC	3 cut(s)	127, 548, 551
BmsI	GCATC	2 cut(s)	112, 183
BpmI	CTGGAG	1 cut(s)	283
Bpu1102I	GCTNAGC	2 cut(s)	312, 533
BpuEI	CTTGAG	3 cut(s)	356, 450, 456
BsaBI	GATNNNNATC	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	1 cut(s)	559
Bse8I	GATNNNNATC	1 cut(s)	135
BseGI	GGATG	2 cut(s)	10, 70
BseJI	GATNNNNATC	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	559
BseMII	CTCAG	3 cut(s)	71, 290, 547
BseSI	GKGCMC	1 cut(s)	490
BseXI	GCAGC	2 cut(s)	112, 558
Bsh1236I	CGCG	1 cut(s)	26
BsiHKAI	GWGCWC	2 cut(s)	324, 490
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	559
BsmAI	GTCTC	2 cut(s)	100, 296
BsmBI	CGTCTC	1 cut(s)	296
BsmFI	GGGAC	1 cut(s)	35
Bsp1286I	GDGCHC	2 cut(s)	324, 490
Bsp143I	GATC	5 cut(s)	136, 218, 268, 355, 459
Bsp1720I	GCTNAGC	2 cut(s)	312, 533
BspACI	CCGC	3 cut(s)	295, 516, 550
BspCNI	CTCAG	3 cut(s)	70, 289, 546
BspFNI	CGCG	1 cut(s)	26
BspMAI	CTGCAG	1 cut(s)	397
BspPI	GGATC	1 cut(s)	226
BsrBI	CCGCTC	1 cut(s)	297
BssMI	GATC	5 cut(s)	136, 218, 268, 355, 459
Bst4CI	ACNGT	2 cut(s)	457, 562
BstC8I	GCNNGC	2 cut(s)	198, 324
BstDEI	CTNAG	5 cut(s)	57, 276, 305, 312, 533
BstF5I	GGATG	2 cut(s)	10, 70
BstFNI	CGCG	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	5 cut(s)	139, 221, 271, 358, 462
BstMAI	GTCTC	2 cut(s)	100, 296
BstMBI	GATC	5 cut(s)	136, 218, 268, 355, 459
BstMWI	GCNNNNNNNGC	2 cut(s)	401, 543
BstNSI	RCATGY	1 cut(s)	422
BstSFI	CTRYAG	1 cut(s)	393
BstSLI	GKGCMC	1 cut(s)	490
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	2 cut(s)	112, 558
BstX2I	RGATCY	1 cut(s)	268
BstXI	CCANNNNNNTGG	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	268
BsuI	GTATCC	1 cut(s)	445
BtsCI	GGATG	2 cut(s)	10, 70
Cac8I	GCNNGC	2 cut(s)	198, 324
CfoI	GCGC	1 cut(s)	28
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	438
CviAII	CATG	3 cut(s)	18, 201, 419
CviQI	GTAC	1 cut(s)	438
DdeI	CTNAG	5 cut(s)	57, 276, 305, 312, 533
DpnI	GATC	5 cut(s)	138, 220, 270, 357, 461
DpnII	GATC	5 cut(s)	136, 218, 268, 355, 459
EcoRI	GAATTC	1 cut(s)	76
Esp3I	CGTCTC	1 cut(s)	296
FaeI	CATG	3 cut(s)	21, 204, 422
FaiI	YATR	5 cut(s)	19, 202, 237, 420, 565
FalI	AAGNNNNNCTT	2 cut(s)	246, 278
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	3 cut(s)	17, 200, 418
FblI	GTMKAC	1 cut(s)	369
Fnu4HI	GCNGC	3 cut(s)	126, 547, 550
FokI	GGATG	2 cut(s)	17, 77
Fsp4HI	GCNGC	3 cut(s)	126, 547, 550
FspBI	CTAG	2 cut(s)	42, 246
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	3 cut(s)	126, 547, 550
GsuI	CTGGAG	1 cut(s)	283
HgaI	GACGC	1 cut(s)	32
HhaI	GCGC	1 cut(s)	28
Hin1II	CATG	3 cut(s)	21, 204, 422
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	3 cut(s)	143, 259, 389
Hpy166II	GTNNAC	3 cut(s)	115, 370, 488
Hpy188I	TCNGA	1 cut(s)	223
Hpy188III	TCNNGA	6 cut(s)	140, 213, 254, 266, 278, 409
Hpy8I	GTNNAC	3 cut(s)	115, 370, 488
HpyAV	CCTTC	2 cut(s)	506, 563
HpyCH4III	ACNGT	2 cut(s)	457, 562
HpyCH4IV	ACGT	1 cut(s)	502
HpyCH4V	TGCA	4 cut(s)	101, 196, 395, 488
HpyF10VI	GCNNNNNNNGC	2 cut(s)	401, 543
HpyF3I	CTNAG	5 cut(s)	57, 276, 305, 312, 533
HpySE526I	ACGT	1 cut(s)	502
Hsp92II	CATG	3 cut(s)	21, 204, 422
HspAI	GCGC	1 cut(s)	26
Kzo9I	GATC	5 cut(s)	136, 218, 268, 355, 459
LmnI	GCTCC	2 cut(s)	302, 319
Lsp1109I	GCAGC	2 cut(s)	112, 558
LweI	GCATC	2 cut(s)	112, 183
MaeI	CTAG	2 cut(s)	42, 246
MaeII	ACGT	1 cut(s)	502
MalI	GATC	5 cut(s)	138, 220, 270, 357, 461
MbiI	CCGCTC	1 cut(s)	297
MboI	GATC	5 cut(s)	136, 218, 268, 355, 459
MboII	GAAGA	1 cut(s)	254
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	2 cut(s)	324, 490
MluCI	AATT	3 cut(s)	76, 184, 281
MmeI	TCCRAC	2 cut(s)	42, 199
MnlI	CCTC	2 cut(s)	209, 331
MseI	TTAA	2 cut(s)	164, 522
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	2 cut(s)	401, 543
NdeII	GATC	5 cut(s)	136, 218, 268, 355, 459
NlaIII	CATG	3 cut(s)	21, 204, 422
NspI	RCATGY	1 cut(s)	422
PfeI	GAWTC	3 cut(s)	143, 259, 389
PkrI	GCNGC	3 cut(s)	127, 548, 551
Psp1406I	AACGTT	1 cut(s)	502
PstI	CTGCAG	1 cut(s)	397
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	1 cut(s)	439
RsaNI	GTAC	1 cut(s)	438
SaqAI	TTAA	2 cut(s)	164, 522
SatI	GCNGC	3 cut(s)	126, 547, 550
Sau3AI	GATC	5 cut(s)	136, 218, 268, 355, 459
SduI	GDGCHC	2 cut(s)	324, 490
SetI	ASST	8 cut(s)	17, 58, 242, 313, 382, 472, 505, 534
SfaNI	GCATC	2 cut(s)	112, 183
SfcI	CTRYAG	1 cut(s)	393
SmlI	CTYRAG	3 cut(s)	335, 465, 471
SmoI	CTYRAG	3 cut(s)	335, 465, 471
Sse9I	AATT	3 cut(s)	76, 184, 281
SsiI	CCGC	3 cut(s)	295, 516, 550
SspI	AATATT	1 cut(s)	541
SspMI	CTAG	2 cut(s)	42, 246
TaaI	ACNGT	2 cut(s)	457, 562
TaiI	ACGT	1 cut(s)	505
TaqI	TCGA	1 cut(s)	358
TaqII	GACCGA	1 cut(s)	171
TasI	AATT	3 cut(s)	76, 184, 281
TatI	WGTACW	1 cut(s)	437
TauI	GCSGC	1 cut(s)	552
TfiI	GAWTC	3 cut(s)	143, 259, 389
Tru1I	TTAA	2 cut(s)	164, 522
Tru9I	TTAA	2 cut(s)	164, 522
TseI	GCWGC	2 cut(s)	125, 546
TspDTI	ATGAA	2 cut(s)	81, 89
VneI	GTGCAC	1 cut(s)	486
XapI	RAATTY	3 cut(s)	76, 184, 281
XceI	RCATGY	1 cut(s)	422
XmiI	GTMKAC	1 cut(s)	369
XspI	CTAG	2 cut(s)	42, 246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.