Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0011955

Physical Location & Seq

Genomic Coordinates Forward (+)

55890978 .. 55895836

Gene Structure 4859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG386400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGATGTTCCAAGCTCATGGGACGCGCTTCGCAAACAGGCTAGGAAACTTGAAGCTCAGTTGGATGAACAGATGAATTCTTATCGTAAGTTTGTCTCTGCAAAGGGTTCTGTCAAATTTGATGCTGCTGATAATGATCTTGAATCTGGGATAGATCGACTATTAAAGCAACTCCAACAAGTAAATTTACAGATGCAAGCATGGGTATCATCAGGAGGATCAGAAATGGTTTCTCATACCTTGACTAGACATCAAGAGATTCTTCAAGATCTCACTCAGGAATTTTATCGTCTCCGCTCCAGCCTTAGAGCTAAGCAGGAGCACGCTTCACTACTTGAGGATTTTAGGGAGTTTGATCGAACAAGAGTTGACTTGGAAGCTGGTGGAGATTCTGCAGGAAACGCTCTCCTGAAAGAACATGCTTCTGTTAGCCGAAATACAGGACAGATGGATACTGTGATCTCTCAAGCTCAAGCAACTCTGGGTGCACTTGTCCTTCAACGTTCAACATTTGGCGGTATTAACTCAAAGCTCAGCAACATTGGCAGCCGCCTCCCAACGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005797 GO:0005801 GO:0006810 GO:0006888 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031201 GO:0031984 GO:0031985 GO:0032879 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048209 GO:0048284 GO:0050789 GO:0050794 GO:0051049 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060341 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0071840 GO:0090174 GO:0098588 GO:0098791 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

V-SNARE_C

Protein Analysis

188

Amino Acids

20.92

Weight (kDa)

6.43

Isoelectric Point (pI)

46.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE_C	PF12352	135 - 188	4.1e-12	Snare region anchored in the vesicle membrane C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15880
fragaria_vesca	FvH4_6g28830
malus_domestica	MD14G1001700.v1.1
prunus_persica	Prupe.3G096500_v2.0.a1 Prupe.3G096500_v2.0.a1 Prupe.3G096500_v2.0.a1
pyrus_communis	pycom12g00170 pycom49g00130
rosa_chinensis	RchiOBHm_Chr2g0133301 RchiOBHm_Chr2g0133361
rosa_laevigata	RLG00000019325
rosa_multiflora	Rmu_sc0003874.1_g000012
rosa_roxburghii	Rroxscaffold_2G00111230
rosa_rugosa	Rorug02G0311200
rosa_samantha	Rh2AG363700 Rh2BG369500 Rh2CG346900 Rh2DG386400
rosa_wichuraiana	Rw2G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	297
AccII	CGCG	1 cut(s)	26
AciI	CCGC	3 cut(s)	295, 516, 550
AclI	AACGTT	1 cut(s)	502
AclWI	GGATC	1 cut(s)	226
AcsI	RAATTY	4 cut(s)	76, 116, 184, 281
AfiI	CCNNNNNNNGG	1 cut(s)	559
AgsI	TTSAA	5 cut(s)	53, 143, 266, 500, 507
AluBI	AGCT	6 cut(s)	15, 56, 311, 380, 470, 532
AluI	AGCT	6 cut(s)	15, 56, 311, 380, 470, 532
Alw21I	GWGCWC	2 cut(s)	324, 490
Alw26I	GTCTC	2 cut(s)	100, 296
Alw44I	GTGCAC	1 cut(s)	486
AlwI	GGATC	1 cut(s)	226
ApaLI	GTGCAC	1 cut(s)	486
ApeKI	GCWGC	2 cut(s)	125, 546
ApoI	RAATTY	4 cut(s)	76, 116, 184, 281
AspLEI	GCGC	1 cut(s)	28
BaeGI	GKGCMC	1 cut(s)	490
Bbv12I	GWGCWC	2 cut(s)	324, 490
BbvI	GCAGC	2 cut(s)	112, 558
BccI	CCATC	1 cut(s)	442
BciVI	GTATCC	1 cut(s)	445
BcoDI	GTCTC	2 cut(s)	100, 296
BfaI	CTAG	2 cut(s)	42, 246
BfmI	CTRYAG	1 cut(s)	393
BfuI	GTATCC	1 cut(s)	445
BglII	AGATCT	1 cut(s)	268
BisI	GCNGC	3 cut(s)	126, 547, 550
BlpI	GCTNAGC	2 cut(s)	312, 533
BlsI	GCNGC	3 cut(s)	127, 548, 551
BmsI	GCATC	2 cut(s)	112, 183
BpmI	CTGGAG	1 cut(s)	283
Bpu1102I	GCTNAGC	2 cut(s)	312, 533
BpuEI	CTTGAG	3 cut(s)	356, 450, 456
BsaBI	GATNNNNATC	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	1 cut(s)	559
Bse8I	GATNNNNATC	1 cut(s)	135
BseGI	GGATG	2 cut(s)	10, 70
BseJI	GATNNNNATC	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	559
BseMII	CTCAG	3 cut(s)	71, 290, 547
BseSI	GKGCMC	1 cut(s)	490
BseXI	GCAGC	2 cut(s)	112, 558
Bsh1236I	CGCG	1 cut(s)	26
BsiHKAI	GWGCWC	2 cut(s)	324, 490
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	559
BsmAI	GTCTC	2 cut(s)	100, 296
BsmBI	CGTCTC	1 cut(s)	296
BsmFI	GGGAC	1 cut(s)	35
Bsp1286I	GDGCHC	2 cut(s)	324, 490
Bsp143I	GATC	6 cut(s)	136, 154, 218, 268, 355, 459
Bsp1720I	GCTNAGC	2 cut(s)	312, 533
BspACI	CCGC	3 cut(s)	295, 516, 550
BspCNI	CTCAG	3 cut(s)	70, 289, 546
BspFNI	CGCG	1 cut(s)	26
BspMAI	CTGCAG	1 cut(s)	397
BspPI	GGATC	1 cut(s)	226
BsrBI	CCGCTC	1 cut(s)	297
BssMI	GATC	6 cut(s)	136, 154, 218, 268, 355, 459
Bst4CI	ACNGT	2 cut(s)	457, 562
BstC8I	GCNNGC	2 cut(s)	198, 324
BstDEI	CTNAG	5 cut(s)	57, 276, 305, 312, 533
BstF5I	GGATG	2 cut(s)	10, 70
BstFNI	CGCG	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	6 cut(s)	139, 157, 221, 271, 358, 462
BstMAI	GTCTC	2 cut(s)	100, 296
BstMBI	GATC	6 cut(s)	136, 154, 218, 268, 355, 459
BstMWI	GCNNNNNNNGC	2 cut(s)	401, 543
BstNSI	RCATGY	1 cut(s)	422
BstSFI	CTRYAG	1 cut(s)	393
BstSLI	GKGCMC	1 cut(s)	490
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	2 cut(s)	112, 558
BstX2I	RGATCY	1 cut(s)	268
BstXI	CCANNNNNNTGG	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	268
BsuI	GTATCC	1 cut(s)	445
BtsCI	GGATG	2 cut(s)	10, 70
Cac8I	GCNNGC	2 cut(s)	198, 324
CfoI	GCGC	1 cut(s)	28
CseI	GACGC	1 cut(s)	32
CviAII	CATG	3 cut(s)	18, 201, 419
DdeI	CTNAG	5 cut(s)	57, 276, 305, 312, 533
DpnI	GATC	6 cut(s)	138, 156, 220, 270, 357, 461
DpnII	GATC	6 cut(s)	136, 154, 218, 268, 355, 459
EcoRI	GAATTC	1 cut(s)	76
Esp3I	CGTCTC	1 cut(s)	296
FaeI	CATG	3 cut(s)	21, 204, 422
FaiI	YATR	5 cut(s)	19, 202, 237, 420, 565
FalI	AAGNNNNNCTT	2 cut(s)	246, 278
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	3 cut(s)	17, 200, 418
Fnu4HI	GCNGC	3 cut(s)	126, 547, 550
FokI	GGATG	2 cut(s)	17, 77
Fsp4HI	GCNGC	3 cut(s)	126, 547, 550
FspBI	CTAG	2 cut(s)	42, 246
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	3 cut(s)	126, 547, 550
GsuI	CTGGAG	1 cut(s)	283
HgaI	GACGC	1 cut(s)	32
HhaI	GCGC	1 cut(s)	28
Hin1II	CATG	3 cut(s)	21, 204, 422
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HinfI	GANTC	3 cut(s)	143, 259, 389
Hpy166II	GTNNAC	2 cut(s)	370, 488
Hpy188I	TCNGA	1 cut(s)	223
Hpy188III	TCNNGA	6 cut(s)	140, 213, 254, 266, 278, 409
Hpy8I	GTNNAC	2 cut(s)	370, 488
HpyAV	CCTTC	1 cut(s)	506
HpyCH4III	ACNGT	2 cut(s)	457, 562
HpyCH4IV	ACGT	1 cut(s)	502
HpyCH4V	TGCA	4 cut(s)	101, 196, 395, 488
HpyF10VI	GCNNNNNNNGC	2 cut(s)	401, 543
HpyF3I	CTNAG	5 cut(s)	57, 276, 305, 312, 533
HpySE526I	ACGT	1 cut(s)	502
Hsp92II	CATG	3 cut(s)	21, 204, 422
HspAI	GCGC	1 cut(s)	26
Kzo9I	GATC	6 cut(s)	136, 154, 218, 268, 355, 459
LmnI	GCTCC	2 cut(s)	302, 319
Lsp1109I	GCAGC	2 cut(s)	112, 558
LweI	GCATC	2 cut(s)	112, 183
MaeI	CTAG	2 cut(s)	42, 246
MaeII	ACGT	1 cut(s)	502
MalI	GATC	6 cut(s)	138, 156, 220, 270, 357, 461
MbiI	CCGCTC	1 cut(s)	297
MboI	GATC	6 cut(s)	136, 154, 218, 268, 355, 459
MboII	GAAGA	1 cut(s)	254
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	2 cut(s)	324, 490
MluCI	AATT	4 cut(s)	76, 116, 184, 281
MmeI	TCCRAC	2 cut(s)	42, 199
MnlI	CCTC	3 cut(s)	209, 331, 563
MseI	TTAA	2 cut(s)	164, 522
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	2 cut(s)	401, 543
NdeII	GATC	6 cut(s)	136, 154, 218, 268, 355, 459
NlaIII	CATG	3 cut(s)	21, 204, 422
NspI	RCATGY	1 cut(s)	422
PfeI	GAWTC	3 cut(s)	143, 259, 389
PkrI	GCNGC	3 cut(s)	127, 548, 551
Psp1406I	AACGTT	1 cut(s)	502
PstI	CTGCAG	1 cut(s)	397
PsuI	RGATCY	1 cut(s)	268
SaqAI	TTAA	2 cut(s)	164, 522
SatI	GCNGC	3 cut(s)	126, 547, 550
Sau3AI	GATC	6 cut(s)	136, 154, 218, 268, 355, 459
SduI	GDGCHC	2 cut(s)	324, 490
SetI	ASST	8 cut(s)	17, 58, 242, 313, 382, 472, 505, 534
SfaNI	GCATC	2 cut(s)	112, 183
SfcI	CTRYAG	1 cut(s)	393
SmlI	CTYRAG	3 cut(s)	335, 465, 471
SmoI	CTYRAG	3 cut(s)	335, 465, 471
Sse9I	AATT	4 cut(s)	76, 116, 184, 281
SsiI	CCGC	3 cut(s)	295, 516, 550
SspMI	CTAG	2 cut(s)	42, 246
TaaI	ACNGT	2 cut(s)	457, 562
TaiI	ACGT	1 cut(s)	505
TaqI	TCGA	2 cut(s)	157, 358
TasI	AATT	4 cut(s)	76, 116, 184, 281
TauI	GCSGC	1 cut(s)	552
TfiI	GAWTC	3 cut(s)	143, 259, 389
Tru1I	TTAA	2 cut(s)	164, 522
Tru9I	TTAA	2 cut(s)	164, 522
TseI	GCWGC	2 cut(s)	125, 546
TspDTI	ATGAA	2 cut(s)	81, 89
VneI	GTGCAC	1 cut(s)	486
XapI	RAATTY	4 cut(s)	76, 116, 184, 281
XceI	RCATGY	1 cut(s)	422
XspI	CTAG	2 cut(s)	42, 246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.