Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0011955

Physical Location & Seq

Genomic Coordinates Forward (+)

50314028 .. 50318389

Gene Structure 4362 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019325

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGATGTGCCAAGCTCATGGGACGCGCTTCGCAAGCAGGCTAGGAAACTTGAAGCTCAGTTGGATGAACAGATGAATTCTTATCGTAAGTTTGTCTCTGCAAAGGGTTCTGTCAAATTTGATGCTGCTGATAATGATCTTGAATCTGGGATAGACCGACTATTAAAGCAACTCCAACAAGTAAATTTACAGATGCAAGCATGGGTATCATCAGGAGGATCAGAAATGGTTTCTCATACCTTGACTAGACATCAAGAGATTCTTCAAGATCTCACTCAGGAATTTTATCGTCTCCGCTCCAGCCTTAGAGCAAAGCAGGAGCACGCTTCACTACTTGAGGATTTTAGGGAGTTTGATCGAACAAGAGTAGACTTGGAAGCTGGTGGAGATTCTGCAGAAAACGCTCTCCTGAAAGAACATGCTTCTGTTAGCCGAAGTACAGGACAGATGGATACTGTGATCTCTCAAGCTCAAGCAACTCTGGGTGCACTTGTCCTTCAACGTTCAACATTTGGCGGTATTAACTCAAAGCTCAGCAATATTGGCAGCCGCCTTCCAACGGTAAGTCACATCCTTTCTGCAATAAAGCGTAAAAAGTCTATGGATACCATCATTCTTTCACTTGTCGCATCAGTGTGCACATTTCTCATATTTATCTACTGGTTGACAAAAACTTTACATTGGGATATCCTATCTGTTCTGCCTCCTCGCCCTCCTCCCCCTGACATTTACATTAGACCCATATTTCCAACAACCTCCCAAGATTTTACAGTTAATTTCTTAATGAAGAGAAAGATTGGCAGGCCACTTGGAGCTCGAAACAATCCCAGGCTGGAGGATGTGAAGCCCTGGATAGTGAAAGCTAGTGCTGGTGTTGGTGCTGAGAAGAAGCCTAGGAAGAAGCAGATCCCTAAGCCTCTGGTGGGTGGTGGTAAGCGTGCCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005797 GO:0005801 GO:0006810 GO:0006888 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031201 GO:0031984 GO:0031985 GO:0032879 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048209 GO:0048284 GO:0050789 GO:0050794 GO:0051049 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060341 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0071840 GO:0090174 GO:0098588 GO:0098791 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

V-SNARE_C

Protein Analysis

316

Amino Acids

35.26

Weight (kDa)

9.9

Isoelectric Point (pI)

44.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE_C	PF12352	135 - 199	5.3e-18	Snare region anchored in the vesicle membrane C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15880
fragaria_vesca	FvH4_6g28830
malus_domestica	MD14G1001700.v1.1
prunus_persica	Prupe.3G096500_v2.0.a1 Prupe.3G096500_v2.0.a1 Prupe.3G096500_v2.0.a1
pyrus_communis	pycom12g00170 pycom49g00130
rosa_chinensis	RchiOBHm_Chr2g0133301 RchiOBHm_Chr2g0133361
rosa_laevigata	RLG00000019325
rosa_multiflora	Rmu_sc0003874.1_g000012
rosa_roxburghii	Rroxscaffold_2G00111230
rosa_rugosa	Rorug02G0311200
rosa_samantha	Rh2AG363700 Rh2BG369500 Rh2CG346900 Rh2DG386400
rosa_wichuraiana	Rw2G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	297
AccI	GTMKAC	1 cut(s)	369
AccII	CGCG	1 cut(s)	26
AciI	CCGC	3 cut(s)	295, 516, 550
AclI	AACGTT	1 cut(s)	502
AclWI	GGATC	2 cut(s)	226, 901
AcsI	RAATTY	4 cut(s)	76, 116, 184, 281
AfaI	GTAC	1 cut(s)	439
AfiI	CCNNNNNNNGG	2 cut(s)	559, 923
AgsI	TTSAA	5 cut(s)	53, 143, 266, 500, 507
AjnI	CCWGG	2 cut(s)	827, 848
AluBI	AGCT	7 cut(s)	15, 56, 380, 470, 532, 815, 863
AluI	AGCT	7 cut(s)	15, 56, 380, 470, 532, 815, 863
Alw21I	GWGCWC	4 cut(s)	324, 490, 641, 817
Alw26I	GTCTC	2 cut(s)	100, 296
Alw44I	GTGCAC	2 cut(s)	486, 637
AlwI	GGATC	2 cut(s)	226, 901
AoxI	GGCC	1 cut(s)	803
ApaLI	GTGCAC	2 cut(s)	486, 637
ApeKI	GCWGC	2 cut(s)	125, 546
ApoI	RAATTY	4 cut(s)	76, 116, 184, 281
AspA2I	CCTAGG	1 cut(s)	893
AspLEI	GCGC	1 cut(s)	28
AvrII	CCTAGG	1 cut(s)	893
BaeGI	GKGCMC	2 cut(s)	490, 641
BanII	GRGCYC	1 cut(s)	817
Bbv12I	GWGCWC	4 cut(s)	324, 490, 641, 817
BbvI	GCAGC	2 cut(s)	112, 558
BccI	CCATC	2 cut(s)	442, 617
BciT130I	CCWGG	2 cut(s)	829, 850
BciVI	GTATCC	2 cut(s)	445, 598
BcoDI	GTCTC	2 cut(s)	100, 296
BfaI	CTAG	4 cut(s)	42, 246, 864, 894
BfmI	CTRYAG	1 cut(s)	393
BfuI	GTATCC	2 cut(s)	445, 598
BglII	AGATCT	1 cut(s)	268
BisI	GCNGC	3 cut(s)	126, 547, 550
BlnI	CCTAGG	1 cut(s)	893
BlpI	GCTNAGC	1 cut(s)	533
BlsI	GCNGC	3 cut(s)	127, 548, 551
Bme1390I	CCNGG	2 cut(s)	829, 850
BmrFI	CCNGG	2 cut(s)	829, 850
BmsI	GCATC	3 cut(s)	112, 183, 638
BpmI	CTGGAG	2 cut(s)	283, 854
Bpu10I	CCTNAGC	1 cut(s)	912
Bpu1102I	GCTNAGC	1 cut(s)	533
BpuEI	CTTGAG	3 cut(s)	356, 450, 456
BsaBI	GATNNNNATC	1 cut(s)	135
BsaJI	CCNNGG	3 cut(s)	827, 848, 893
Bsc4I	CCNNNNNNNGG	2 cut(s)	559, 923
Bse1I	ACTGG	1 cut(s)	665
Bse8I	GATNNNNATC	1 cut(s)	135
BseBI	CCWGG	2 cut(s)	829, 850
BseDI	CCNNGG	3 cut(s)	827, 848, 893
BseGI	GGATG	4 cut(s)	10, 70, 570, 844
BseJI	GATNNNNATC	1 cut(s)	135
BseLI	CCNNNNNNNGG	2 cut(s)	559, 923
BseMII	CTCAG	4 cut(s)	71, 290, 547, 873
BseNI	ACTGG	1 cut(s)	665
BseRI	GAGGAG	2 cut(s)	696, 705
BseSI	GKGCMC	2 cut(s)	490, 641
BseXI	GCAGC	2 cut(s)	112, 558
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	805
BsiHKAI	GWGCWC	4 cut(s)	324, 490, 641, 817
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	2 cut(s)	559, 923
BsmAI	GTCTC	2 cut(s)	100, 296
BsmBI	CGTCTC	1 cut(s)	296
BsmFI	GGGAC	1 cut(s)	35
BsnI	GGCC	1 cut(s)	805
Bsp1286I	GDGCHC	4 cut(s)	324, 490, 641, 817
Bsp143I	GATC	6 cut(s)	136, 218, 268, 355, 459, 906
Bsp1720I	GCTNAGC	1 cut(s)	533
BspACI	CCGC	3 cut(s)	295, 516, 550
BspANI	GGCC	1 cut(s)	805
BspCNI	CTCAG	4 cut(s)	70, 289, 546, 874
BspFNI	CGCG	1 cut(s)	26
BspMAI	CTGCAG	1 cut(s)	397
BspPI	GGATC	2 cut(s)	226, 901
BsrBI	CCGCTC	1 cut(s)	297
BsrI	ACTGG	1 cut(s)	665
BssECI	CCNNGG	3 cut(s)	827, 848, 893
BssMI	GATC	6 cut(s)	136, 218, 268, 355, 459, 906
BssT1I	CCWWGG	1 cut(s)	893
Bst2UI	CCWGG	2 cut(s)	829, 850
Bst4CI	ACNGT	3 cut(s)	457, 562, 772
Bst6I	CTCTTC	1 cut(s)	782
BstC8I	GCNNGC	6 cut(s)	35, 39, 198, 324, 803, 939
BstDEI	CTNAG	6 cut(s)	57, 276, 305, 533, 882, 912
BstF5I	GGATG	4 cut(s)	10, 70, 570, 844
BstFNI	CGCG	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	6 cut(s)	139, 221, 271, 358, 462, 909
BstMAI	GTCTC	2 cut(s)	100, 296
BstMBI	GATC	6 cut(s)	136, 218, 268, 355, 459, 906
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 401, 543
BstNI	CCWGG	2 cut(s)	829, 850
BstNSI	RCATGY	1 cut(s)	422
BstSCI	CCNGG	2 cut(s)	827, 848
BstSFI	CTRYAG	1 cut(s)	393
BstSLI	GKGCMC	2 cut(s)	490, 641
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	2 cut(s)	112, 558
BstX2I	RGATCY	2 cut(s)	268, 906
BstXI	CCANNNNNNTGG	1 cut(s)	18
BstYI	RGATCY	2 cut(s)	268, 906
BsuI	GTATCC	2 cut(s)	445, 598
BsuRI	GGCC	1 cut(s)	805
BtsCI	GGATG	4 cut(s)	10, 70, 570, 844
BtsIMutI	CAGTG	1 cut(s)	639
Cac8I	GCNNGC	6 cut(s)	35, 39, 198, 324, 803, 939
CfoI	GCGC	1 cut(s)	28
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	438
CviAII	CATG	3 cut(s)	18, 201, 419
CviQI	GTAC	1 cut(s)	438
DdeI	CTNAG	6 cut(s)	57, 276, 305, 533, 882, 912
DpnI	GATC	6 cut(s)	138, 220, 270, 357, 461, 908
DpnII	GATC	6 cut(s)	136, 218, 268, 355, 459, 906
Eam1104I	CTCTTC	1 cut(s)	782
EarI	CTCTTC	1 cut(s)	782
Ecl136II	GAGCTC	1 cut(s)	815
Eco130I	CCWWGG	1 cut(s)	893
Eco24I	GRGCYC	1 cut(s)	817
Eco32I	GATATC	1 cut(s)	688
Eco53kI	GAGCTC	1 cut(s)	815
EcoICRI	GAGCTC	1 cut(s)	815
EcoRI	GAATTC	1 cut(s)	76
EcoRII	CCWGG	2 cut(s)	827, 848
EcoRV	GATATC	1 cut(s)	688
EcoT14I	CCWWGG	1 cut(s)	893
EcoT38I	GRGCYC	1 cut(s)	817
ErhI	CCWWGG	1 cut(s)	893
Esp3I	CGTCTC	1 cut(s)	296
FaeI	CATG	3 cut(s)	21, 204, 422
FaiI	YATR	7 cut(s)	19, 202, 237, 420, 602, 650, 743
FalI	AAGNNNNNCTT	3 cut(s)	246, 278, 926
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	3 cut(s)	17, 200, 418
FblI	GTMKAC	1 cut(s)	369
Fnu4HI	GCNGC	3 cut(s)	126, 547, 550
FokI	GGATG	4 cut(s)	17, 77, 557, 851
FriOI	GRGCYC	1 cut(s)	817
Fsp4HI	GCNGC	3 cut(s)	126, 547, 550
FspBI	CTAG	4 cut(s)	42, 246, 864, 894
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	3 cut(s)	126, 547, 550
GsuI	CTGGAG	2 cut(s)	283, 854
HaeIII	GGCC	1 cut(s)	805
HgaI	GACGC	1 cut(s)	32
HhaI	GCGC	1 cut(s)	28
Hin1II	CATG	3 cut(s)	21, 204, 422
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HincII	GTYRAC	1 cut(s)	666
HindII	GTYRAC	1 cut(s)	666
HinfI	GANTC	3 cut(s)	143, 259, 389
Hpy166II	GTNNAC	4 cut(s)	370, 488, 639, 666
Hpy188I	TCNGA	1 cut(s)	223
Hpy188III	TCNNGA	6 cut(s)	140, 213, 254, 266, 278, 409
Hpy8I	GTNNAC	4 cut(s)	370, 488, 639, 666
HpyAV	CCTTC	2 cut(s)	506, 563
HpyCH4III	ACNGT	3 cut(s)	457, 562, 772
HpyCH4IV	ACGT	1 cut(s)	502
HpyCH4V	TGCA	6 cut(s)	101, 196, 395, 488, 581, 639
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 401, 543
HpyF3I	CTNAG	6 cut(s)	57, 276, 305, 533, 882, 912
HpySE526I	ACGT	1 cut(s)	502
Hsp92II	CATG	3 cut(s)	21, 204, 422
HspAI	GCGC	1 cut(s)	26
Kzo9I	GATC	6 cut(s)	136, 218, 268, 355, 459, 906
LmnI	GCTCC	3 cut(s)	302, 319, 812
Lsp1109I	GCAGC	2 cut(s)	112, 558
LweI	GCATC	3 cut(s)	112, 183, 638
MaeI	CTAG	4 cut(s)	42, 246, 864, 894
MaeII	ACGT	1 cut(s)	502
MaeIII	GTNAC	1 cut(s)	566
MalI	GATC	6 cut(s)	138, 220, 270, 357, 461, 908
MbiI	CCGCTC	1 cut(s)	297
MboI	GATC	6 cut(s)	136, 218, 268, 355, 459, 906
MboII	GAAGA	4 cut(s)	254, 799, 898, 910
MflI	RGATCY	2 cut(s)	268, 906
MhlI	GDGCHC	4 cut(s)	324, 490, 641, 817
MluCI	AATT	5 cut(s)	76, 116, 184, 281, 775
MmeI	TCCRAC	4 cut(s)	42, 199, 581, 773
MnlI	CCTC	9 cut(s)	209, 331, 714, 717, 723, 726, 766, 829, 927
MseI	TTAA	4 cut(s)	164, 522, 774, 782
MslI	CAYNNNNRTG	1 cut(s)	634
MspR9I	CCNGG	2 cut(s)	829, 850
MvaI	CCWGG	2 cut(s)	829, 850
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	3 cut(s)	34, 401, 543
NdeII	GATC	6 cut(s)	136, 218, 268, 355, 459, 906
NlaIII	CATG	3 cut(s)	21, 204, 422
NmuCI	GTSAC	1 cut(s)	566
NspI	RCATGY	1 cut(s)	422
PfeI	GAWTC	3 cut(s)	143, 259, 389
PkrI	GCNGC	3 cut(s)	127, 548, 551
Psp124BI	GAGCTC	1 cut(s)	817
Psp1406I	AACGTT	1 cut(s)	502
Psp6I	CCWGG	2 cut(s)	827, 848
PspGI	CCWGG	2 cut(s)	827, 848
PstI	CTGCAG	1 cut(s)	397
PsuI	RGATCY	2 cut(s)	268, 906
RsaI	GTAC	1 cut(s)	439
RsaNI	GTAC	1 cut(s)	438
RseI	CAYNNNNRTG	1 cut(s)	634
SacI	GAGCTC	1 cut(s)	817
SaqAI	TTAA	4 cut(s)	164, 522, 774, 782
SatI	GCNGC	3 cut(s)	126, 547, 550
Sau3AI	GATC	6 cut(s)	136, 218, 268, 355, 459, 906
ScrFI	CCNGG	2 cut(s)	829, 850
SduI	GDGCHC	4 cut(s)	324, 490, 641, 817
SfaNI	GCATC	3 cut(s)	112, 183, 638
SfcI	CTRYAG	1 cut(s)	393
SmiMI	CAYNNNNRTG	1 cut(s)	634
SmlI	CTYRAG	3 cut(s)	335, 465, 471
SmoI	CTYRAG	3 cut(s)	335, 465, 471
Sse9I	AATT	5 cut(s)	76, 116, 184, 281, 775
SsiI	CCGC	3 cut(s)	295, 516, 550
SspI	AATATT	1 cut(s)	541
SspMI	CTAG	4 cut(s)	42, 246, 864, 894
SstI	GAGCTC	1 cut(s)	817
StyD4I	CCNGG	2 cut(s)	827, 848
StyI	CCWWGG	1 cut(s)	893
TaaI	ACNGT	3 cut(s)	457, 562, 772
TaiI	ACGT	1 cut(s)	505
TaqI	TCGA	2 cut(s)	358, 817
TaqII	GACCGA	1 cut(s)	171
TasI	AATT	5 cut(s)	76, 116, 184, 281, 775
TatI	WGTACW	1 cut(s)	437
TauI	GCSGC	1 cut(s)	552
TfiI	GAWTC	3 cut(s)	143, 259, 389
Tru1I	TTAA	4 cut(s)	164, 522, 774, 782
Tru9I	TTAA	4 cut(s)	164, 522, 774, 782
TscAI	CASTG	1 cut(s)	639
TseFI	GTSAC	1 cut(s)	566
TseI	GCWGC	2 cut(s)	125, 546
Tsp45I	GTSAC	1 cut(s)	566
TspDTI	ATGAA	3 cut(s)	81, 89, 800
TspRI	CASTG	1 cut(s)	639
VneI	GTGCAC	2 cut(s)	486, 637
XapI	RAATTY	4 cut(s)	76, 116, 184, 281
XceI	RCATGY	1 cut(s)	422
XmaJI	CCTAGG	1 cut(s)	893
XmiI	GTMKAC	1 cut(s)	369
XspI	CTAG	4 cut(s)	42, 246, 864, 894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.