Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0011955

Physical Location & Seq

Genomic Coordinates Forward (+)

258314 .. 260239

Gene Structure 1926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g00170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGAATTCTTATCGTAAGTTTGTGTCTGCAAAGGGTTCTACAAAAGTTGGTACTGCCGAGAATGATCTTGAATCTGGGATAGATCGACTATTAAAGCAACTCCAACAAGTAAATTCACAAATGCAAGCATGGGTTTCATCGGGAGGATCAGAAATGGTTTCTCATACCTTGACTAGACATCAAGAAATTTTCCAAGATATCACTCAGGAGTTCTATCGTCTCCGAAACAGCCTTAGAGCTAAGCAAGAGCATGCTTCACTCCTTGAGGATTTTAGGGAGTTTGATCGAACAAGAGTAGACTTGGAAGATGGTGCGGAAAACGCCCTCCTGAAAGAGCATGCTGCTGTTAGCCGAAGTACAGGACAGGTGGATACTGTGATCTCTCAAGCTCAAGCAACCCTTGGTGCACTTGTCATTCAACGCTCCACTTTTGGTGGTATTAATTCAAAGCTCAGCAATATTGGCAGCCGCCTTCCAACGGTAAATCAAATGCTTTCTGCTATAAAGCGTAAAAAGTCTATGGATACCATCATTCTTTCTCTCGTCGCATCTGTATGCACATTTCTCATATTTATCTACTGGTTGTCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005797 GO:0005801 GO:0006810 GO:0006888 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031201 GO:0031984 GO:0031985 GO:0032879 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048209 GO:0048284 GO:0050789 GO:0050794 GO:0051049 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060341 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0071840 GO:0090174 GO:0098588 GO:0098791 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

V-SNARE_C

Protein Analysis

198

Amino Acids

22.03

Weight (kDa)

9.3

Isoelectric Point (pI)

34.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE_C	PF12352	108 - 172	3.6e-17	Snare region anchored in the vesicle membrane C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15880
fragaria_vesca	FvH4_6g28830
malus_domestica	MD14G1001700.v1.1
prunus_persica	Prupe.3G096500_v2.0.a1 Prupe.3G096500_v2.0.a1 Prupe.3G096500_v2.0.a1
pyrus_communis	pycom12g00170 pycom49g00130
rosa_chinensis	RchiOBHm_Chr2g0133301 RchiOBHm_Chr2g0133361
rosa_laevigata	RLG00000019325
rosa_multiflora	Rmu_sc0003874.1_g000012
rosa_roxburghii	Rroxscaffold_2G00111230
rosa_rugosa	Rorug02G0311200
rosa_samantha	Rh2AG363700 Rh2BG369500 Rh2CG346900 Rh2DG386400
rosa_wichuraiana	Rw2G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	297
AciI	CCGC	2 cut(s)	314, 469
AclWI	GGATC	1 cut(s)	154
AcsI	RAATTY	3 cut(s)	4, 112, 186
AfaI	GTAC	2 cut(s)	52, 358
AfiI	CCNNNNNNNGG	1 cut(s)	478
AgsI	TTSAA	3 cut(s)	71, 419, 447
AluBI	AGCT	3 cut(s)	239, 389, 451
AluI	AGCT	3 cut(s)	239, 389, 451
Alw21I	GWGCWC	1 cut(s)	409
Alw26I	GTCTC	1 cut(s)	224
Alw44I	GTGCAC	1 cut(s)	405
AlwI	GGATC	1 cut(s)	154
ApaLI	GTGCAC	1 cut(s)	405
ApeKI	GCWGC	2 cut(s)	341, 465
ApoI	RAATTY	3 cut(s)	4, 112, 186
AseI	ATTAAT	1 cut(s)	441
BaeGI	GKGCMC	1 cut(s)	409
Bbv12I	GWGCWC	1 cut(s)	409
BbvI	GCAGC	2 cut(s)	328, 477
BccI	CCATC	2 cut(s)	302, 536
BciVI	GTATCC	2 cut(s)	364, 517
BcoDI	GTCTC	1 cut(s)	224
BfaI	CTAG	1 cut(s)	174
BfuI	GTATCC	2 cut(s)	364, 517
BisI	GCNGC	3 cut(s)	342, 466, 469
BlpI	GCTNAGC	2 cut(s)	240, 452
BlsI	GCNGC	3 cut(s)	343, 467, 470
BmsI	GCATC	1 cut(s)	557
Bpu1102I	GCTNAGC	2 cut(s)	240, 452
BpuEI	CTTGAG	3 cut(s)	284, 369, 375
BsaJI	CCNNGG	1 cut(s)	400
Bsc4I	CCNNNNNNNGG	1 cut(s)	478
Bse1I	ACTGG	1 cut(s)	584
BseDI	CCNNGG	1 cut(s)	400
BseLI	CCNNNNNNNGG	1 cut(s)	478
BseMII	CTCAG	2 cut(s)	218, 466
BseNI	ACTGG	1 cut(s)	584
BseSI	GKGCMC	1 cut(s)	409
BseXI	GCAGC	2 cut(s)	328, 477
BsiHKAI	GWGCWC	1 cut(s)	409
BslI	CCNNNNNNNGG	1 cut(s)	478
BsmAI	GTCTC	1 cut(s)	224
BsmBI	CGTCTC	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	409
Bsp143I	GATC	5 cut(s)	64, 82, 146, 283, 378
Bsp1720I	GCTNAGC	2 cut(s)	240, 452
BspACI	CCGC	2 cut(s)	314, 469
BspCNI	CTCAG	2 cut(s)	217, 465
BspPI	GGATC	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	584
BssECI	CCNNGG	1 cut(s)	400
BssMI	GATC	5 cut(s)	64, 82, 146, 283, 378
BssT1I	CCWWGG	1 cut(s)	400
Bst4CI	ACNGT	2 cut(s)	376, 481
BstC8I	GCNNGC	3 cut(s)	126, 252, 339
BstDEI	CTNAG	4 cut(s)	204, 233, 240, 452
BstKTI	GATC	5 cut(s)	67, 85, 149, 286, 381
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	5 cut(s)	64, 82, 146, 283, 378
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 462
BstNSI	RCATGY	2 cut(s)	254, 341
BstSLI	GKGCMC	1 cut(s)	409
BstV1I	GCAGC	2 cut(s)	328, 477
BsuI	GTATCC	2 cut(s)	364, 517
Cac8I	GCNNGC	3 cut(s)	126, 252, 339
Csp6I	GTAC	2 cut(s)	51, 357
CviAII	CATG	3 cut(s)	129, 251, 338
CviJI	RGCY	6 cut(s)	231, 239, 351, 389, 451, 468
CviKI_1	RGCY	6 cut(s)	231, 239, 351, 389, 451, 468
CviQI	GTAC	2 cut(s)	51, 357
DdeI	CTNAG	4 cut(s)	204, 233, 240, 452
DpnI	GATC	5 cut(s)	66, 84, 148, 285, 380
DpnII	GATC	5 cut(s)	64, 82, 146, 283, 378
Eco130I	CCWWGG	1 cut(s)	400
Eco32I	GATATC	1 cut(s)	199
EcoRI	GAATTC	1 cut(s)	4
EcoRV	GATATC	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	400
ErhI	CCWWGG	1 cut(s)	400
Esp3I	CGTCTC	1 cut(s)	224
FaeI	CATG	3 cut(s)	132, 254, 341
FaiI	YATR	8 cut(s)	130, 165, 252, 339, 503, 521, 556, 569
FalI	AAGNNNNNCTT	2 cut(s)	384, 416
FatI	CATG	3 cut(s)	128, 250, 337
FblI	GTMKAC	1 cut(s)	297
Fnu4HI	GCNGC	3 cut(s)	342, 466, 469
Fsp4HI	GCNGC	3 cut(s)	342, 466, 469
FspBI	CTAG	1 cut(s)	174
GluI	GCNGC	3 cut(s)	342, 466, 469
Hin1II	CATG	3 cut(s)	132, 254, 341
HinfI	GANTC	1 cut(s)	71
Hpy166II	GTNNAC	2 cut(s)	298, 407
Hpy188I	TCNGA	2 cut(s)	151, 224
Hpy188III	TCNNGA	5 cut(s)	68, 141, 182, 206, 328
Hpy8I	GTNNAC	2 cut(s)	298, 407
Hpy99I	CGWCG	1 cut(s)	548
HpyAV	CCTTC	1 cut(s)	482
HpyCH4III	ACNGT	2 cut(s)	376, 481
HpyCH4V	TGCA	4 cut(s)	29, 124, 407, 558
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 462
HpyF3I	CTNAG	4 cut(s)	204, 233, 240, 452
Hsp92II	CATG	3 cut(s)	132, 254, 341
Kzo9I	GATC	5 cut(s)	64, 82, 146, 283, 378
LmnI	GCTCC	1 cut(s)	428
LpnPI	CCDG	6 cut(s)	60, 191, 341, 345, 350, 565
Lsp1109I	GCAGC	2 cut(s)	328, 477
LweI	GCATC	1 cut(s)	557
MaeI	CTAG	1 cut(s)	174
MalI	GATC	5 cut(s)	66, 84, 148, 285, 380
MboI	GATC	5 cut(s)	64, 82, 146, 283, 378
MboII	GAAGA	1 cut(s)	317
MhlI	GDGCHC	1 cut(s)	409
MluCI	AATT	4 cut(s)	4, 112, 186, 442
MmeI	TCCRAC	2 cut(s)	127, 500
MnlI	CCTC	3 cut(s)	137, 259, 335
MseI	TTAA	2 cut(s)	92, 441
MslI	CAYNNNNRTG	1 cut(s)	553
MwoI	GCNNNNNNNGC	2 cut(s)	320, 462
NdeII	GATC	5 cut(s)	64, 82, 146, 283, 378
NlaIII	CATG	3 cut(s)	132, 254, 341
NmeAIII	GCCGAG	1 cut(s)	82
NspI	RCATGY	2 cut(s)	254, 341
PaeI	GCATGC	2 cut(s)	254, 341
PfeI	GAWTC	1 cut(s)	71
PkrI	GCNGC	3 cut(s)	343, 467, 470
PshBI	ATTAAT	1 cut(s)	441
RsaI	GTAC	2 cut(s)	52, 358
RsaNI	GTAC	2 cut(s)	51, 357
RseI	CAYNNNNRTG	1 cut(s)	553
SaqAI	TTAA	2 cut(s)	92, 441
SatI	GCNGC	3 cut(s)	342, 466, 469
Sau3AI	GATC	5 cut(s)	64, 82, 146, 283, 378
SduI	GDGCHC	1 cut(s)	409
SetI	ASST	5 cut(s)	170, 241, 369, 391, 453
SfaNI	GCATC	1 cut(s)	557
SmiMI	CAYNNNNRTG	1 cut(s)	553
SmlI	CTYRAG	3 cut(s)	263, 384, 390
SmoI	CTYRAG	3 cut(s)	263, 384, 390
SphI	GCATGC	2 cut(s)	254, 341
Sse9I	AATT	4 cut(s)	4, 112, 186, 442
SsiI	CCGC	2 cut(s)	314, 469
SspI	AATATT	1 cut(s)	460
SspMI	CTAG	1 cut(s)	174
StyI	CCWWGG	1 cut(s)	400
TaaI	ACNGT	2 cut(s)	376, 481
TaqI	TCGA	2 cut(s)	85, 286
TasI	AATT	4 cut(s)	4, 112, 186, 442
TatI	WGTACW	1 cut(s)	356
TauI	GCSGC	1 cut(s)	471
TfiI	GAWTC	1 cut(s)	71
Tru1I	TTAA	2 cut(s)	92, 441
Tru9I	TTAA	2 cut(s)	92, 441
TseI	GCWGC	2 cut(s)	341, 465
TspDTI	ATGAA	2 cut(s)	17, 126
VneI	GTGCAC	1 cut(s)	405
VspI	ATTAAT	1 cut(s)	441
XapI	RAATTY	3 cut(s)	4, 112, 186
XceI	RCATGY	2 cut(s)	254, 341
XmiI	GTMKAC	1 cut(s)	297
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.