AT1G16080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014097
Physical Location & Seq
Forward (+)
5514262 .. 5516027
1766 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G16080.1

Sequence Viewer

Length: 942 bp
ATGGCTAAAGCCAGTAGTACTCTGTTTGCTGTTTCCTGCTCCGCTTCAGCTCGTTTCTCTTTCCTCCGACGCTCTGAATCTCTTAAACCCTCAGTTTCAAGAGCGAGATTCGCCGTTCCAATGGCTATGGCCGCCGCGTCAGCTGCCACCGCTAAAAAACTAGCGCCTGCTGTGATTGTGGGTGGCGGAAGAGTCGGAAGGGCGTTACAGGAAATGGGTAATGGCGAGGATTTGTTGGTGAAGAGAGGAGAAGCAGTTCCGGTTGATTTTGAAGGACCCATTTTGGTTTGTACAAGAAATGATGATCTCGATGCTGTTCTTGAAGCTACTCCTCAGTCTAGATGGAAAGATTTGGTCTTCTTCCAAAATGGAATGATGGAGCCGTGGTTTGAGAGCAAAGGTTTGGGTGATACAGACCAAGTGTTGGCCTATTTTGCTGTGTCAAAGCTCGGCGAGCCTCCCGTGGATGGAAAGACTGACACTAACCCAGAAGGTCTTACTGCTGCTTATGGAAAATGGGCTTCAGAGATAGCTGCAAGATTGCAATCTGGTGGCCTCTCTTGCAAGGTACTTGACAAAGAAGCTTTTCAGAAGCAAATGTTGGAGAAACTCATTTGGATTTGTGCATTTATGCTTGTTGGAGCTCGTCATCCAGGTGCAAGTGTTGGCACGGTGGAGAAAGAATACAGAGATGAAGTGTCGAGACTCATCCAAGAACTTGCAGCAGCTGCTGCCGCGGAAAAAGGACTAACCTTTGAAGAGAACATGGTGGAAAGACTATGTGCTTATTCACGAGCTGTTTCTCATTTCCCAACTGCTGTTAAAGAATTTAAATGGAGGAATGGTTGGTTTTATTCACTCTCAGAGAAGGCGATTGCGGAAGGGCAACCGGATCCGTGTCCCCTCCATACCGAATGGCTGAAAGAGCTTAAAGTGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

313

Amino Acids

34.13

Weight (kDa)

6.38

Isoelectric Point (pI)

35.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014097)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16080
fragaria_vesca FvH4_6g28180
malus_domestica MD09G1228700.v1.1 MD17G1227100.v1.1
prunus_persica Prupe.3G104600_v2.0.a1
pyrus_communis pycom09g14760
rosa_chinensis RchiOBHm_Chr2g0132161
rosa_laevigata RLG00000019233 RLG00000019238
rosa_multiflora Rmu_sc0002005.1_g000013 Rmu_sc0009538.1_g000008
rosa_roxburghii Rroxscaffold_2G00112350
rosa_rugosa Rorug02G0302700
rosa_samantha Rh2AG355800 Rh2BG361800 Rh2DG378900
rosa_wichuraiana Rw2G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 424
AccII CGCG 2 cut(s) 137, 737
AciI CCGC 8 cut(s) 42, 132, 135, 150, 186, 735, 737, 878
AclWI GGATC 2 cut(s) 887, 900
AcoI YGGCCR 1 cut(s) 129
AcsI RAATTY 1 cut(s) 827
AcuI CTGAAG 2 cut(s) 30, 507
AfaI GTAC 3 cut(s) 19, 292, 570
AfiI CCNNNNNNNGG 2 cut(s) 424, 467
AgsI TTSAA 4 cut(s) 99, 272, 323, 758
AjnI CCWGG 1 cut(s) 652
AjuI GAANNNNNNNTTGG 2 cut(s) 584, 616
AloI GAACNNNNNNTCC 2 cut(s) 240, 272
Alw21I GWGCWC 1 cut(s) 646
Alw26I GTCTC 1 cut(s) 697
AlwI GGATC 2 cut(s) 887, 900
AlwNI CAGNNNCTG 2 cut(s) 728, 731
AoxI GGCC 3 cut(s) 129, 426, 553
ApeKI GCWGC 7 cut(s) 143, 503, 533, 722, 725, 728, 731
ApoI RAATTY 1 cut(s) 827
Asp700I GAANNNNTTC 2 cut(s) 255, 585
AspLEI GCGC 1 cut(s) 166
AspS9I GGNCC 1 cut(s) 275
AsuHPI GGTGA 2 cut(s) 250, 419
AvaII GGWCC 1 cut(s) 275
BamHI GGATCC 1 cut(s) 892
BanII GRGCYC 1 cut(s) 646
BauI CACGAG 1 cut(s) 792
BbsI GAAGAC 1 cut(s) 349
Bbv12I GWGCWC 1 cut(s) 646
BbvI GCAGC 7 cut(s) 130, 490, 520, 715, 718, 734, 737
BccI CCATC 3 cut(s) 336, 370, 461
BceAI ACGGC 2 cut(s) 98, 367
BciT130I CCWGG 1 cut(s) 654
BcoDI GTCTC 1 cut(s) 697
BfaI CTAG 2 cut(s) 161, 339
BfoI RGCGCY 1 cut(s) 167
BmcAI AGTACT 1 cut(s) 19
Bme1390I CCNGG 1 cut(s) 654
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 275
BmiI GGNNCC 3 cut(s) 277, 381, 894
BmrFI CCNGG 1 cut(s) 654
BmsI GCATC 1 cut(s) 301
BpiI GAAGAC 1 cut(s) 349
BsaBI GATNNNNATC 1 cut(s) 544
BsaJI CCNNGG 3 cut(s) 383, 462, 735
BsaWI WCCGGW 2 cut(s) 259, 889
BsaXI ACNNNNNCTCC 6 cut(s) 240, 270, 371, 401, 829, 859
Bsc4I CCNNNNNNNGG 2 cut(s) 424, 467
Bse1I ACTGG 1 cut(s) 12
Bse8I GATNNNNATC 1 cut(s) 544
BseBI CCWGG 1 cut(s) 654
BseDI CCNNGG 3 cut(s) 383, 462, 735
BseGI GGATG 3 cut(s) 472, 649, 708
BseJI GATNNNNATC 1 cut(s) 544
BseLI CCNNNNNNNGG 2 cut(s) 424, 467
BseMII CTCAG 3 cut(s) 105, 347, 876
BseNI ACTGG 1 cut(s) 12
BseRI GAGGAG 2 cut(s) 261, 321
BseXI GCAGC 7 cut(s) 130, 490, 520, 715, 718, 734, 737
Bsh1236I CGCG 2 cut(s) 137, 737
BshFI GGCC 3 cut(s) 131, 428, 555
BsiHKAI GWGCWC 1 cut(s) 646
BsiSI CCGG 2 cut(s) 260, 890
BslFI GGGAC 1 cut(s) 885
BslI CCNNNNNNNGG 2 cut(s) 424, 467
BsmAI GTCTC 1 cut(s) 697
BsmFI GGGAC 1 cut(s) 885
BsnI GGCC 3 cut(s) 131, 428, 555
Bsp1286I GDGCHC 1 cut(s) 646
Bsp1407I TGTACA 1 cut(s) 290
Bsp143I GATC 2 cut(s) 304, 892
BspACI CCGC 8 cut(s) 42, 132, 135, 150, 186, 735, 737, 878
BspANI GGCC 3 cut(s) 131, 428, 555
BspCNI CTCAG 3 cut(s) 104, 346, 875
BspFNI CGCG 2 cut(s) 137, 737
BspLI GGNNCC 3 cut(s) 277, 381, 894
BspPI GGATC 2 cut(s) 887, 900
BsrGI TGTACA 1 cut(s) 290
BsrI ACTGG 1 cut(s) 12
BssECI CCNNGG 3 cut(s) 383, 462, 735
BssMI GATC 2 cut(s) 304, 892
BssSI CACGAG 1 cut(s) 792
Bst2BI CACGAG 1 cut(s) 792
Bst2UI CCWGG 1 cut(s) 654
Bst4CI ACNGT 1 cut(s) 673
Bst6I CTCTTC 3 cut(s) 184, 236, 753
BstAPI GCANNNNNTGC 2 cut(s) 728, 731
BstAUI TGTACA 1 cut(s) 290
BstC8I GCNNGC 2 cut(s) 168, 455
BstDEI CTNAG 3 cut(s) 91, 333, 862
BstDSI CCRYGG 3 cut(s) 383, 462, 735
BstF5I GGATG 3 cut(s) 472, 649, 708
BstFNI CGCG 2 cut(s) 137, 737
BstH2I RGCGCY 1 cut(s) 167
BstHHI GCGC 1 cut(s) 166
BstKTI GATC 2 cut(s) 307, 895
BstMAI GTCTC 1 cut(s) 697
BstMBI GATC 2 cut(s) 304, 892
BstNI CCWGG 1 cut(s) 654
BstSCI CCNGG 1 cut(s) 652
BstUI CGCG 2 cut(s) 137, 737
BstV1I GCAGC 7 cut(s) 130, 490, 520, 715, 718, 734, 737
BstV2I GAAGAC 1 cut(s) 349
BstX2I RGATCY 1 cut(s) 892
BstYI RGATCY 1 cut(s) 892
BsuRI GGCC 3 cut(s) 131, 428, 555
BtgI CCRYGG 3 cut(s) 383, 462, 735
BtsCI GGATG 3 cut(s) 472, 649, 708
Cac8I GCNNGC 2 cut(s) 168, 455
CaiI CAGNNNCTG 2 cut(s) 728, 731
CfoI GCGC 1 cut(s) 166
Cfr13I GGNCC 1 cut(s) 275
Cfr42I CCGCGG 1 cut(s) 738
CseI GACGC 2 cut(s) 78, 126
Csp6I GTAC 3 cut(s) 18, 291, 569
CviAII CATG 1 cut(s) 766
CviQI GTAC 3 cut(s) 18, 291, 569
DdeI CTNAG 3 cut(s) 91, 333, 862
DpnI GATC 2 cut(s) 306, 894
DpnII GATC 2 cut(s) 304, 892
DraI TTTAAA 1 cut(s) 832
EaeI YGGCCR 1 cut(s) 129
Eam1104I CTCTTC 3 cut(s) 184, 236, 753
EarI CTCTTC 3 cut(s) 184, 236, 753
EciI GGCGGA 1 cut(s) 201
Ecl136II GAGCTC 1 cut(s) 644
Eco24I GRGCYC 1 cut(s) 646
Eco47I GGWCC 1 cut(s) 275
Eco53kI GAGCTC 1 cut(s) 644
Eco57I CTGAAG 2 cut(s) 30, 507
EcoICRI GAGCTC 1 cut(s) 644
EcoO109I RGGNCCY 1 cut(s) 275
EcoRII CCWGG 1 cut(s) 652
EcoT38I GRGCYC 1 cut(s) 646
FaeI CATG 1 cut(s) 769
FaiI YATR 7 cut(s) 128, 510, 632, 767, 781, 909, 940
FaqI GGGAC 1 cut(s) 885
FatI CATG 1 cut(s) 765
FokI GGATG 3 cut(s) 479, 636, 695
FriOI GRGCYC 1 cut(s) 646
FspBI CTAG 2 cut(s) 161, 339
GlaI GCGC 1 cut(s) 165
HaeII RGCGCY 1 cut(s) 167
HaeIII GGCC 3 cut(s) 131, 428, 555
HapII CCGG 2 cut(s) 260, 890
HgaI GACGC 2 cut(s) 78, 126
HhaI GCGC 1 cut(s) 166
Hin1II CATG 1 cut(s) 769
Hin6I GCGC 1 cut(s) 164
HinP1I GCGC 1 cut(s) 164
HindIII AAGCTT 1 cut(s) 582
HinfI GANTC 4 cut(s) 77, 108, 192, 705
HpaII CCGG 2 cut(s) 260, 890
HphI GGTGA 2 cut(s) 250, 419
Hpy188I TCNGA 6 cut(s) 68, 76, 197, 526, 591, 865
Hpy188III TCNNGA 6 cut(s) 99, 308, 320, 339, 702, 792
Hpy99I CGWCG 1 cut(s) 72
HpyAV CCTTC 5 cut(s) 192, 266, 485, 862, 875
HpyCH4III ACNGT 1 cut(s) 673
HpyCH4V TGCA 6 cut(s) 536, 544, 564, 626, 659, 722
HpyF3I CTNAG 3 cut(s) 91, 333, 862
Hsp92II CATG 1 cut(s) 769
HspAI GCGC 1 cut(s) 164
KspI CCGCGG 1 cut(s) 738
Kzo9I GATC 2 cut(s) 304, 892
LmnI GCTCC 3 cut(s) 44, 379, 641
Lsp1109I GCAGC 7 cut(s) 130, 490, 520, 715, 718, 734, 737
LweI GCATC 1 cut(s) 301
MaeI CTAG 2 cut(s) 161, 339
MaeIII GTNAC 1 cut(s) 204
MalI GATC 2 cut(s) 306, 894
MboI GATC 2 cut(s) 304, 892
MboII GAAGA 5 cut(s) 201, 253, 349, 352, 770
MflI RGATCY 1 cut(s) 892
MhlI GDGCHC 1 cut(s) 646
MluCI AATT 1 cut(s) 827
MlyI GAGTC 2 cut(s) 201, 699
MmeI TCCRAC 4 cut(s) 91, 175, 582, 619
MnlI CCTC 9 cut(s) 74, 100, 220, 239, 342, 468, 566, 831, 914
MroXI GAANNNNTTC 2 cut(s) 255, 585
MseI TTAA 4 cut(s) 84, 822, 831, 930
MslI CAYNNNNRTG 1 cut(s) 654
MspA1I CMGCKG 3 cut(s) 143, 728, 737
MspI CCGG 2 cut(s) 260, 890
MspR9I CCNGG 1 cut(s) 654
MvaI CCWGG 1 cut(s) 654
MvnI CGCG 2 cut(s) 137, 737
NdeII GATC 2 cut(s) 304, 892
NlaIII CATG 1 cut(s) 769
NlaIV GGNNCC 3 cut(s) 277, 381, 894
NmeAIII GCCGAG 1 cut(s) 429
PdmI GAANNNNTTC 2 cut(s) 255, 585
PfeI GAWTC 2 cut(s) 77, 108
PflMI CCANNNNNTGG 1 cut(s) 424
PleI GAGTC 2 cut(s) 200, 699
PpsI GAGTC 2 cut(s) 200, 699
PpuMI RGGWCCY 1 cut(s) 275
Psp124BI GAGCTC 1 cut(s) 646
Psp5II RGGWCCY 1 cut(s) 275
Psp6I CCWGG 1 cut(s) 652
PspGI CCWGG 1 cut(s) 652
PspN4I GGNNCC 3 cut(s) 277, 381, 894
PspPI GGNCC 1 cut(s) 275
PspPPI RGGWCCY 1 cut(s) 275
PstNI CAGNNNCTG 2 cut(s) 728, 731
PsuI RGATCY 1 cut(s) 892
PvuII CAGCTG 2 cut(s) 143, 728
RsaI GTAC 3 cut(s) 19, 292, 570
RsaNI GTAC 3 cut(s) 18, 291, 569
RseI CAYNNNNRTG 1 cut(s) 654
SacI GAGCTC 1 cut(s) 646
SacII CCGCGG 1 cut(s) 738
SaqAI TTAA 4 cut(s) 84, 822, 831, 930
Sau3AI GATC 2 cut(s) 304, 892
Sau96I GGNCC 1 cut(s) 275
ScaI AGTACT 1 cut(s) 19
SchI GAGTC 2 cut(s) 201, 699
ScrFI CCNGG 1 cut(s) 654
SduI GDGCHC 1 cut(s) 646
SfaNI GCATC 1 cut(s) 301
Sfr303I CCGCGG 1 cut(s) 738
SgrBI CCGCGG 1 cut(s) 738
SinI GGWCC 1 cut(s) 275
SmiI ATTTAAAT 1 cut(s) 832
SmiMI CAYNNNNRTG 1 cut(s) 654
Sse9I AATT 1 cut(s) 827
SsiI CCGC 8 cut(s) 42, 132, 135, 150, 186, 735, 737, 878
SspMI CTAG 2 cut(s) 161, 339
SstI GAGCTC 1 cut(s) 646
StyD4I CCNGG 1 cut(s) 652
SwaI ATTTAAAT 1 cut(s) 832
TaaI ACNGT 1 cut(s) 673
TaqI TCGA 2 cut(s) 309, 701
TasI AATT 1 cut(s) 827
TatI WGTACW 2 cut(s) 17, 290
TauI GCSGC 3 cut(s) 134, 137, 737
TfiI GAWTC 2 cut(s) 77, 108
Tru1I TTAA 4 cut(s) 84, 822, 831, 930
Tru9I TTAA 4 cut(s) 84, 822, 831, 930
TseI GCWGC 7 cut(s) 143, 503, 533, 722, 725, 728, 731
TspDTI ATGAA 1 cut(s) 708
TspGWI ACGGA 1 cut(s) 885
Van91I CCANNNNNTGG 1 cut(s) 424
VpaK11BI GGWCC 1 cut(s) 275
XapI RAATTY 1 cut(s) 827
XbaI TCTAGA 1 cut(s) 338
XmnI GAANNNNTTC 2 cut(s) 255, 585
XspI CTAG 2 cut(s) 161, 339
ZrmI AGTACT 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.