FvH4_6g28180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014097
Physical Location & Seq
Reverse (-)
21706041 .. 21709668
3628 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g28180.t1

Sequence Viewer

Length: 897 bp
ATGGCCAACATGACACTACTCTCACTCTCTAGTTCCACTCTCTCCCACCTCACAACAAAACCCACTTGGAGAATCAAAGCCAAAGCCATGGCCTCCGTACCCACCAAGACCAAAGTGGTGCCTGCTGTCATAGTCGGCGGCGGAAGGGTTGGGAAGGCCTTGAATGACATGGGCAGTGGTGATGACTTGCTGGTGAAAAGAGGAGAGCCTGTGCCTCTTGACTTTGAAGGCCCTATCATGGTTTGCACTAGGAATGATGATCTAGAGGCTGTTCTTCAGTCCACTCCCCGGCCCAGATGGAACGATTTGGTTTTTTTCCAGAATGGAATGCTGGAACCATGGCTTGAAAGTAAAGGTCTTGCTGATGCAAACCAAGTGTTAGCATATTTTGCTGTCTCCAAGCTGGGAGAACCTCCGGTTGATGGAATAACTGATACCAATCCTGAAGGACTGACAGCATCATATGGGAAGTGGGCATCTGTAGTAGCTGACAGATTACATGCTGGCGGCCTCACTTGCAAGGTTCTCGACAAGGAAGCATTTCAGAAGCAGATGTTAGAAAAGTTGATATGGATTTCAGCATTCATGCTTGTTGGAGCTCGTCATCCAGGAGCAACAGTAGGTGGTGTAGAGAAAGACTACCGCTCTGAGGTTTCCAGCCTTATTGCAGAGCTCGCCTCCGCAGCATCAGCTGAAAAGGGGTTGGTATTTGAAGGAGGCATGGAGGATAGACTATGTGCATACTCACGGGCCGTTTCCCACTTTCCTACTGCAGTCAAAGAGTTTAAATGGAGAAATGGTTGGTTCTATTCTCTCTCTGAAAAGGCAATTGCAGAAGGAAAGCCTGATCCCTGCCCCCTACATACGGCATGGCTCAAGGAATTGAAAATTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

299

Amino Acids

32.36

Weight (kDa)

6.97

Isoelectric Point (pI)

23.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014097)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16080
fragaria_vesca FvH4_6g28180
malus_domestica MD09G1228700.v1.1 MD17G1227100.v1.1
prunus_persica Prupe.3G104600_v2.0.a1
pyrus_communis pycom09g14760
rosa_chinensis RchiOBHm_Chr2g0132161
rosa_laevigata RLG00000019233 RLG00000019238
rosa_multiflora Rmu_sc0002005.1_g000013 Rmu_sc0009538.1_g000008
rosa_roxburghii Rroxscaffold_2G00112350
rosa_rugosa Rorug02G0302700
rosa_samantha Rh2AG355800 Rh2BG361800 Rh2DG378900
rosa_wichuraiana Rw2G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 118
AccBSI CCGCTC 1 cut(s) 645
AciI CCGC 5 cut(s) 138, 141, 507, 643, 681
AclWI GGATC 1 cut(s) 842
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 2 cut(s) 260, 465
AfaI GTAC 1 cut(s) 99
AfiI CCNNNNNNNGG 5 cut(s) 238, 288, 422, 649, 865
AgsI TTSAA 5 cut(s) 163, 227, 347, 713, 886
AjnI CCWGG 1 cut(s) 607
AluBI AGCT 5 cut(s) 403, 488, 599, 673, 692
AluI AGCT 5 cut(s) 403, 488, 599, 673, 692
Alw21I GWGCWC 2 cut(s) 601, 675
Alw26I GTCTC 1 cut(s) 400
AlwI GGATC 1 cut(s) 842
AoxI GGCC 7 cut(s) 3, 90, 156, 229, 290, 508, 750
ApeKI GCWGC 1 cut(s) 683
Asp700I GAANNNNTTC 1 cut(s) 540
AspS9I GGNCC 3 cut(s) 230, 291, 750
AsuC2I CCSGG 1 cut(s) 289
AsuHPI GGTGA 2 cut(s) 191, 205
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 118
BanII GRGCYC 2 cut(s) 601, 675
Bbv12I GWGCWC 2 cut(s) 601, 675
BbvI GCAGC 1 cut(s) 695
BccI CCATC 2 cut(s) 291, 416
BceAI ACGGC 2 cut(s) 737, 882
BcgI CGANNNNNNTGC 2 cut(s) 508, 542
BciT130I CCWGG 1 cut(s) 609
BcnI CCSGG 1 cut(s) 289
BcoDI GTCTC 1 cut(s) 400
BfaI CTAG 3 cut(s) 30, 249, 263
BfmI CTRYAG 2 cut(s) 480, 771
BisI GCNGC 3 cut(s) 139, 508, 684
BlsI GCNGC 3 cut(s) 140, 509, 685
Bme1390I CCNGG 2 cut(s) 289, 609
BmgT120I GGNCC 3 cut(s) 230, 291, 750
BmiI GGNNCC 2 cut(s) 120, 336
BmrFI CCNGG 2 cut(s) 289, 609
BmsI GCATC 4 cut(s) 355, 467, 485, 695
BplI GAGNNNNNCTC 2 cut(s) 662, 694
BpuEI CTTGAG 1 cut(s) 860
BpuMI CCSGG 1 cut(s) 289
BsaBI GATNNNNATC 1 cut(s) 438
BsaJI CCNNGG 3 cut(s) 87, 287, 338
BsaWI WCCGGW 1 cut(s) 415
BsaXI ACNNNNNCTCC 6 cut(s) 195, 225, 603, 633, 784, 814
Bsc4I CCNNNNNNNGG 5 cut(s) 238, 288, 422, 649, 865
Bse8I GATNNNNATC 1 cut(s) 438
BseBI CCWGG 1 cut(s) 609
BseDI CCNNGG 3 cut(s) 87, 287, 338
BseGI GGATG 1 cut(s) 604
BseJI GATNNNNATC 1 cut(s) 438
BseLI CCNNNNNNNGG 5 cut(s) 238, 288, 422, 649, 865
BseMII CTCAG 1 cut(s) 639
BseRI GAGGAG 1 cut(s) 216
BseXI GCAGC 1 cut(s) 695
BseYI CCCAGC 1 cut(s) 403
BshFI GGCC 7 cut(s) 5, 92, 158, 231, 292, 510, 752
BshNI GGYRCC 1 cut(s) 118
BsiHKAI GWGCWC 2 cut(s) 601, 675
BsiSI CCGG 2 cut(s) 289, 416
BslI CCNNNNNNNGG 5 cut(s) 238, 288, 422, 649, 865
BsmAI GTCTC 1 cut(s) 400
BsmI GAATGC 2 cut(s) 333, 581
BsnI GGCC 7 cut(s) 5, 92, 158, 231, 292, 510, 752
Bsp1286I GDGCHC 2 cut(s) 601, 675
Bsp143I GATC 2 cut(s) 259, 847
Bsp19I CCATGG 2 cut(s) 87, 338
BspACI CCGC 5 cut(s) 138, 141, 507, 643, 681
BspANI GGCC 7 cut(s) 5, 92, 158, 231, 292, 510, 752
BspCNI CTCAG 1 cut(s) 640
BspLI GGNNCC 2 cut(s) 120, 336
BspMAI CTGCAG 1 cut(s) 775
BspPI GGATC 1 cut(s) 842
BspT107I GGYRCC 1 cut(s) 118
BsrBI CCGCTC 1 cut(s) 645
BssECI CCNNGG 3 cut(s) 87, 287, 338
BssMI GATC 2 cut(s) 259, 847
BssT1I CCWWGG 2 cut(s) 87, 338
Bst2UI CCWGG 1 cut(s) 609
Bst4CI ACNGT 1 cut(s) 619
BstAPI GCANNNNNTGC 1 cut(s) 389
BstC8I GCNNGC 3 cut(s) 123, 505, 675
BstDEI CTNAG 1 cut(s) 648
BstDSI CCRYGG 2 cut(s) 87, 338
BstF5I GGATG 1 cut(s) 604
BstKTI GATC 2 cut(s) 262, 850
BstMAI GTCTC 1 cut(s) 400
BstMBI GATC 2 cut(s) 259, 847
BstMWI GCNNNNNNNGC 5 cut(s) 389, 516, 674, 683, 689
BstNI CCWGG 1 cut(s) 609
BstNSI RCATGY 1 cut(s) 503
BstSCI CCNGG 2 cut(s) 287, 607
BstSFI CTRYAG 2 cut(s) 480, 771
BstV1I GCAGC 1 cut(s) 695
BstXI CCANNNNNNTGG 1 cut(s) 88
BsuRI GGCC 7 cut(s) 5, 92, 158, 231, 292, 510, 752
BtgI CCRYGG 2 cut(s) 87, 338
BtsCI GGATG 1 cut(s) 604
BtsI GCAGTG 1 cut(s) 181
BtsIMutI CAGTG 1 cut(s) 181
Cac8I GCNNGC 3 cut(s) 123, 505, 675
Cfr13I GGNCC 3 cut(s) 230, 291, 750
Csp6I GTAC 1 cut(s) 98
CviAII CATG 9 cut(s) 10, 88, 169, 238, 339, 500, 586, 721, 870
CviQI GTAC 1 cut(s) 98
DdeI CTNAG 1 cut(s) 648
DpnI GATC 2 cut(s) 261, 849
DpnII GATC 2 cut(s) 259, 847
DraI TTTAAA 1 cut(s) 787
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 156
Ecl136II GAGCTC 2 cut(s) 599, 673
Eco130I CCWWGG 2 cut(s) 87, 338
Eco147I AGGCCT 1 cut(s) 158
Eco24I GRGCYC 2 cut(s) 601, 675
Eco53kI GAGCTC 2 cut(s) 599, 673
Eco57I CTGAAG 2 cut(s) 260, 465
EcoICRI GAGCTC 2 cut(s) 599, 673
EcoO109I RGGNCCY 1 cut(s) 230
EcoRII CCWGG 1 cut(s) 607
EcoT14I CCWWGG 2 cut(s) 87, 338
EcoT38I GRGCYC 2 cut(s) 601, 675
ErhI CCWWGG 2 cut(s) 87, 338
FaeI CATG 9 cut(s) 13, 91, 172, 241, 342, 503, 589, 724, 873
FatI CATG 9 cut(s) 9, 87, 168, 237, 338, 499, 585, 720, 869
FauNDI CATATG 1 cut(s) 463
Fnu4HI GCNGC 3 cut(s) 139, 508, 684
FokI GGATG 1 cut(s) 591
FriOI GRGCYC 2 cut(s) 601, 675
Fsp4HI GCNGC 3 cut(s) 139, 508, 684
FspBI CTAG 3 cut(s) 30, 249, 263
GluI GCNGC 3 cut(s) 139, 508, 684
GsaI CCCAGC 1 cut(s) 407
HaeIII GGCC 7 cut(s) 5, 92, 158, 231, 292, 510, 752
HapII CCGG 2 cut(s) 289, 416
Hin1II CATG 9 cut(s) 13, 91, 172, 241, 342, 503, 589, 724, 873
HinfI GANTC 1 cut(s) 72
HpaII CCGG 2 cut(s) 289, 416
HphI GGTGA 2 cut(s) 191, 205
Hpy166II GTNNAC 1 cut(s) 282
Hpy188I TCNGA 3 cut(s) 546, 649, 820
Hpy188III TCNNGA 5 cut(s) 218, 263, 319, 443, 527
Hpy8I GTNNAC 1 cut(s) 282
HpyAV CCTTC 6 cut(s) 138, 148, 221, 440, 707, 830
HpyCH4III ACNGT 1 cut(s) 619
HpyCH4V TGCA 7 cut(s) 246, 368, 519, 668, 740, 773, 833
HpyF10VI GCNNNNNNNGC 5 cut(s) 389, 516, 674, 683, 689
HpyF3I CTNAG 1 cut(s) 648
Hsp92II CATG 9 cut(s) 13, 91, 172, 241, 342, 503, 589, 724, 873
Kzo9I GATC 2 cut(s) 259, 847
LmnI GCTCC 2 cut(s) 596, 611
Lsp1109I GCAGC 1 cut(s) 695
LweI GCATC 4 cut(s) 355, 467, 485, 695
MaeI CTAG 3 cut(s) 30, 249, 263
MalI GATC 2 cut(s) 261, 849
MbiI CCGCTC 1 cut(s) 645
MboI GATC 2 cut(s) 259, 847
MboII GAAGA 1 cut(s) 266
MfeI CAATTG 1 cut(s) 828
MhlI GDGCHC 2 cut(s) 601, 675
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 828, 881, 888
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 574
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 540
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 786
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 692
MspI CCGG 2 cut(s) 289, 416
MspR9I CCNGG 2 cut(s) 289, 609
MunI CAATTG 1 cut(s) 828
Mva1269I GAATGC 2 cut(s) 333, 581
MvaI CCWGG 1 cut(s) 609
MwoI GCNNNNNNNGC 5 cut(s) 389, 516, 674, 683, 689
NciI CCSGG 1 cut(s) 289
NcoI CCATGG 2 cut(s) 87, 338
NdeI CATATG 1 cut(s) 463
NdeII GATC 2 cut(s) 259, 847
NlaIII CATG 9 cut(s) 13, 91, 172, 241, 342, 503, 589, 724, 873
NlaIV GGNNCC 2 cut(s) 120, 336
NspI RCATGY 1 cut(s) 503
PceI AGGCCT 1 cut(s) 158
PctI GAATGC 2 cut(s) 333, 581
PdmI GAANNNNTTC 1 cut(s) 540
PfeI GAWTC 1 cut(s) 72
PfoI TCCNGGA 1 cut(s) 607
PkrI GCNGC 3 cut(s) 140, 509, 685
Psp124BI GAGCTC 2 cut(s) 601, 675
Psp6I CCWGG 1 cut(s) 607
PspFI CCCAGC 1 cut(s) 403
PspGI CCWGG 1 cut(s) 607
PspN4I GGNNCC 2 cut(s) 120, 336
PspPI GGNCC 3 cut(s) 230, 291, 750
PstI CTGCAG 1 cut(s) 775
PvuII CAGCTG 1 cut(s) 692
RsaI GTAC 1 cut(s) 99
RsaNI GTAC 1 cut(s) 98
SacI GAGCTC 2 cut(s) 601, 675
SaqAI TTAA 1 cut(s) 786
SatI GCNGC 3 cut(s) 139, 508, 684
Sau3AI GATC 2 cut(s) 259, 847
Sau96I GGNCC 3 cut(s) 230, 291, 750
ScrFI CCNGG 2 cut(s) 289, 609
SduI GDGCHC 2 cut(s) 601, 675
SfaNI GCATC 4 cut(s) 355, 467, 485, 695
SfcI CTRYAG 2 cut(s) 480, 771
SmlI CTYRAG 1 cut(s) 875
SmoI CTYRAG 1 cut(s) 875
Sse9I AATT 3 cut(s) 828, 881, 888
SseBI AGGCCT 1 cut(s) 158
SsiI CCGC 5 cut(s) 138, 141, 507, 643, 681
SspMI CTAG 3 cut(s) 30, 249, 263
SstI GAGCTC 2 cut(s) 601, 675
StuI AGGCCT 1 cut(s) 158
StyD4I CCNGG 2 cut(s) 287, 607
StyI CCWWGG 2 cut(s) 87, 338
TaaI ACNGT 1 cut(s) 619
TaqI TCGA 1 cut(s) 528
TasI AATT 3 cut(s) 828, 881, 888
TauI GCSGC 2 cut(s) 141, 510
TfiI GAWTC 1 cut(s) 72
Tru1I TTAA 1 cut(s) 786
Tru9I TTAA 1 cut(s) 786
TscAI CASTG 1 cut(s) 181
TseI GCWGC 1 cut(s) 683
TspDTI ATGAA 1 cut(s) 574
TspGWI ACGGA 1 cut(s) 85
TspRI CASTG 1 cut(s) 181
XbaI TCTAGA 1 cut(s) 262
XceI RCATGY 1 cut(s) 503
XcmI CCANNNNNNNNNTGG 1 cut(s) 112
XmnI GAANNNNTTC 1 cut(s) 540
XspI CTAG 3 cut(s) 30, 249, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.