Prupe.3G104600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0014097
Physical Location & Seq
Forward (+)
8258315 .. 8262759
4445 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G104600.1

Sequence Viewer

Length: 927 bp
ATGGCCAACAACACACTAACACTCTCTAGCTCCACTCTCTTCCACCTCACTAGAAAACCCATTTCATTCACTTCAACACTCACCCTAAGAATCAAAGCGAGGGCCTCCACAGCCATTGCCATGGCTTCTACCACCAAAACCAAGGTGGTACCTGCAGTGATAGTCGGTGGTGGAAGGGTTGGCAGAGCCTTAGAGGACATGGGCAATGGTGATGACTTGCTGGTGAAAAGAGGAGACCCTGTGCCTCTTGATTTCAAAGGTCCAATCTTGGTTTGCACTAGGAATGATGATCTTGAGGCTGTTCTTGAGGCCACTCCAAGGCCTAGATGGAACGATATGGTTTTTTTCCAGAACGGAATGCTGGAACCGTGGTTTGAAAGTAAAGGTCTTGGTGATGCGGATCAAGTGCTAGCATATTTTGCTGTCTCCAAGCTTGGAGAACCTCCTGTTGATGGAAAGACTGATACTAATCCTGAAGGACTGACAGCATCATATGGGAAGTGGGCATCTGTAGTAGCTGAAAGATTACAGGCTGGAGGCCTTACTTGCAAGGTTCTCAACAAGGAAGCATTTCAGAAGCAGATGTTAGAGAAGTTGATCTGGATTTCAGCATTCATGCTTGTTGGAGCTCGTCATCCGGGAACAACTGTAGGTGGTGTAGAGAAAGAATACCGCTCTGAGGTGTCTAGCCTCATTGCAGAGCTTGCCTCTGCAGCAGCAGCAGAGAAAGGGTTGGTATTTGAAGAAGCCATGGAGGATCGATTATGTGCATACTCACGCGCTGTTGCTCACTTTCCAACTGCAGTTAAAGAGTTTAAATGGAGAAATGGTTGGTTTTACTCTCTATCTGAGAAGGCAATTGCGGCGGGAAAGCCTGATCCCTGTCCCCTACATACAGCATGGCTCAAAGAGTTAAAAGTTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

309

Amino Acids

33.52

Weight (kDa)

8.25

Isoelectric Point (pI)

23.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014097)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16080
fragaria_vesca FvH4_6g28180
malus_domestica MD09G1228700.v1.1 MD17G1227100.v1.1
prunus_persica Prupe.3G104600_v2.0.a1
pyrus_communis pycom09g14760
rosa_chinensis RchiOBHm_Chr2g0132161
rosa_laevigata RLG00000019233 RLG00000019238
rosa_multiflora Rmu_sc0002005.1_g000013 Rmu_sc0009538.1_g000008
rosa_roxburghii Rroxscaffold_2G00112350
rosa_rugosa Rorug02G0302700
rosa_samantha Rh2AG355800 Rh2BG361800 Rh2DG378900
rosa_wichuraiana Rw2G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 160
Acc65I GGTACC 1 cut(s) 148
AccB1I GGYRCC 1 cut(s) 148
AccBSI CCGCTC 1 cut(s) 675
AccII CGCG 1 cut(s) 780
AciI CCGC 4 cut(s) 398, 673, 863, 866
AclWI GGATC 3 cut(s) 408, 765, 872
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 495
AfaI GTAC 1 cut(s) 150
AfiI CCNNNNNNNGG 3 cut(s) 318, 452, 679
AgsI TTSAA 4 cut(s) 75, 256, 377, 743
AluBI AGCT 5 cut(s) 30, 433, 518, 629, 703
AluI AGCT 5 cut(s) 30, 433, 518, 629, 703
Alw21I GWGCWC 1 cut(s) 631
Alw26I GTCTC 2 cut(s) 228, 430
AlwI GGATC 3 cut(s) 408, 765, 872
AoxI GGCC 5 cut(s) 3, 102, 309, 320, 538
ApeKI GCWGC 3 cut(s) 713, 716, 719
Asp700I GAANNNNTTC 1 cut(s) 570
Asp718I GGTACC 1 cut(s) 148
AspLEI GCGC 1 cut(s) 782
AspS9I GGNCC 2 cut(s) 102, 260
AsuC2I CCSGG 1 cut(s) 639
AsuHPI GGTGA 4 cut(s) 73, 221, 235, 404
AsuNHI GCTAGC 1 cut(s) 409
AvaII GGWCC 1 cut(s) 260
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 148
BanII GRGCYC 1 cut(s) 631
Bbv12I GWGCWC 1 cut(s) 631
BbvI GCAGC 3 cut(s) 725, 728, 731
BccI CCATC 2 cut(s) 321, 446
BcnI CCSGG 1 cut(s) 639
BcoDI GTCTC 2 cut(s) 228, 430
BfaI CTAG 7 cut(s) 27, 51, 279, 324, 410, 687, 925
BfmI CTRYAG 5 cut(s) 153, 510, 648, 711, 801
BfuAI ACCTGC 1 cut(s) 160
BisI GCNGC 4 cut(s) 714, 717, 720, 864
BlsI GCNGC 4 cut(s) 715, 718, 721, 865
Bme1390I CCNGG 1 cut(s) 639
Bme18I GGWCC 1 cut(s) 260
BmgT120I GGNCC 2 cut(s) 102, 260
BmiI GGNNCC 2 cut(s) 150, 366
BmrFI CCNGG 1 cut(s) 639
BmsI GCATC 3 cut(s) 385, 497, 515
BmtI GCTAGC 1 cut(s) 413
BplI GAGNNNNNCTC 2 cut(s) 692, 724
BpmI CTGGAG 1 cut(s) 555
BpuEI CTTGAG 2 cut(s) 314, 326
BpuMI CCSGG 1 cut(s) 639
Bsa29I ATCGAT 1 cut(s) 760
BsaBI GATNNNNATC 2 cut(s) 399, 468
BsaI GGTCTC 1 cut(s) 228
BsaJI CCNNGG 5 cut(s) 120, 141, 317, 368, 750
BsaXI ACNNNNNCTCC 4 cut(s) 225, 255, 814, 844
Bsc4I CCNNNNNNNGG 3 cut(s) 318, 452, 679
Bse3DI GCAATG 3 cut(s) 114, 211, 693
Bse8I GATNNNNATC 2 cut(s) 399, 468
BseCI ATCGAT 1 cut(s) 760
BseDI CCNNGG 5 cut(s) 120, 141, 317, 368, 750
BseGI GGATG 1 cut(s) 634
BseJI GATNNNNATC 2 cut(s) 399, 468
BseLI CCNNNNNNNGG 3 cut(s) 318, 452, 679
BseMI GCAATG 3 cut(s) 114, 211, 693
BseMII CTCAG 2 cut(s) 669, 840
BseRI GAGGAG 1 cut(s) 246
BseXI GCAGC 3 cut(s) 725, 728, 731
Bsh1236I CGCG 1 cut(s) 780
BshFI GGCC 5 cut(s) 5, 104, 311, 322, 540
BshNI GGYRCC 1 cut(s) 148
BshVI ATCGAT 1 cut(s) 760
BsiHKAI GWGCWC 1 cut(s) 631
BsiSI CCGG 1 cut(s) 638
BslFI GGGAC 1 cut(s) 870
BslI CCNNNNNNNGG 3 cut(s) 318, 452, 679
BsmAI GTCTC 2 cut(s) 228, 430
BsmFI GGGAC 1 cut(s) 870
BsmI GAATGC 2 cut(s) 363, 611
BsnI GGCC 5 cut(s) 5, 104, 311, 322, 540
Bso31I GGTCTC 1 cut(s) 228
Bsp1286I GDGCHC 1 cut(s) 631
Bsp143I GATC 5 cut(s) 289, 400, 597, 757, 877
Bsp19I CCATGG 2 cut(s) 120, 750
BspACI CCGC 4 cut(s) 398, 673, 863, 866
BspANI GGCC 5 cut(s) 5, 104, 311, 322, 540
BspCNI CTCAG 2 cut(s) 670, 841
BspDI ATCGAT 1 cut(s) 760
BspFNI CGCG 1 cut(s) 780
BspLI GGNNCC 2 cut(s) 150, 366
BspMAI CTGCAG 3 cut(s) 157, 715, 805
BspMI ACCTGC 1 cut(s) 160
BspOI GCTAGC 1 cut(s) 413
BspPI GGATC 3 cut(s) 408, 765, 872
BspT107I GGYRCC 1 cut(s) 148
BspTNI GGTCTC 1 cut(s) 228
BsrBI CCGCTC 1 cut(s) 675
BsrDI GCAATG 3 cut(s) 114, 211, 693
BssECI CCNNGG 5 cut(s) 120, 141, 317, 368, 750
BssMI GATC 5 cut(s) 289, 400, 597, 757, 877
BssT1I CCWWGG 4 cut(s) 120, 141, 317, 750
Bst4CI ACNGT 2 cut(s) 369, 649
Bst6I CTCTTC 1 cut(s) 44
BstAPI GCANNNNNTGC 2 cut(s) 419, 704
BstC8I GCNNGC 2 cut(s) 411, 705
BstDEI CTNAG 4 cut(s) 86, 190, 678, 849
BstDSI CCRYGG 3 cut(s) 120, 368, 750
BstF5I GGATG 1 cut(s) 634
BstFNI CGCG 1 cut(s) 780
BstHHI GCGC 1 cut(s) 782
BstKTI GATC 5 cut(s) 292, 403, 600, 760, 880
BstMAI GTCTC 2 cut(s) 228, 430
BstMBI GATC 5 cut(s) 289, 400, 597, 757, 877
BstMWI GCNNNNNNNGC 7 cut(s) 110, 419, 546, 704, 713, 719, 863
BstSCI CCNGG 1 cut(s) 637
BstSFI CTRYAG 5 cut(s) 153, 510, 648, 711, 801
BstUI CGCG 1 cut(s) 780
BstV1I GCAGC 3 cut(s) 725, 728, 731
BstXI CCANNNNNNTGG 1 cut(s) 121
Bsu15I ATCGAT 1 cut(s) 760
BsuRI GGCC 5 cut(s) 5, 104, 311, 322, 540
BsuTUI ATCGAT 1 cut(s) 760
BtgI CCRYGG 3 cut(s) 120, 368, 750
BtsCI GGATG 1 cut(s) 634
BtsI GCAGTG 1 cut(s) 162
BtsIMutI CAGTG 1 cut(s) 162
BveI ACCTGC 1 cut(s) 160
Cac8I GCNNGC 2 cut(s) 411, 705
CfoI GCGC 1 cut(s) 782
Cfr13I GGNCC 2 cut(s) 102, 260
ClaI ATCGAT 1 cut(s) 760
Csp6I GTAC 1 cut(s) 149
CspCI CAANNNNNGTGG 2 cut(s) 97, 132
CviAII CATG 5 cut(s) 121, 199, 616, 751, 900
CviQI GTAC 1 cut(s) 149
DdeI CTNAG 4 cut(s) 86, 190, 678, 849
DpnI GATC 5 cut(s) 291, 402, 599, 759, 879
DpnII GATC 5 cut(s) 289, 400, 597, 757, 877
DraI TTTAAA 1 cut(s) 817
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Ecl136II GAGCTC 1 cut(s) 629
Eco130I CCWWGG 4 cut(s) 120, 141, 317, 750
Eco147I AGGCCT 2 cut(s) 322, 540
Eco24I GRGCYC 1 cut(s) 631
Eco31I GGTCTC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 260
Eco53kI GAGCTC 1 cut(s) 629
Eco57I CTGAAG 1 cut(s) 495
EcoICRI GAGCTC 1 cut(s) 629
EcoO109I RGGNCCY 1 cut(s) 102
EcoT14I CCWWGG 4 cut(s) 120, 141, 317, 750
EcoT38I GRGCYC 1 cut(s) 631
ErhI CCWWGG 4 cut(s) 120, 141, 317, 750
FaeI CATG 5 cut(s) 124, 202, 619, 754, 903
FaqI GGGAC 1 cut(s) 870
FatI CATG 5 cut(s) 120, 198, 615, 750, 899
FauI CCCGC 1 cut(s) 859
FauNDI CATATG 1 cut(s) 493
Fnu4HI GCNGC 4 cut(s) 714, 717, 720, 864
FokI GGATG 1 cut(s) 621
FriOI GRGCYC 1 cut(s) 631
Fsp4HI GCNGC 4 cut(s) 714, 717, 720, 864
FspBI CTAG 7 cut(s) 27, 51, 279, 324, 410, 687, 925
GlaI GCGC 1 cut(s) 781
GluI GCNGC 4 cut(s) 714, 717, 720, 864
GsuI CTGGAG 1 cut(s) 555
HaeIII GGCC 5 cut(s) 5, 104, 311, 322, 540
HapII CCGG 1 cut(s) 638
HhaI GCGC 1 cut(s) 782
Hin1II CATG 5 cut(s) 124, 202, 619, 754, 903
Hin6I GCGC 1 cut(s) 780
HinP1I GCGC 1 cut(s) 780
HindIII AAGCTT 1 cut(s) 431
HinfI GANTC 1 cut(s) 90
HpaII CCGG 1 cut(s) 638
HphI GGTGA 4 cut(s) 73, 221, 235, 404
Hpy188I TCNGA 3 cut(s) 576, 679, 850
Hpy188III TCNNGA 6 cut(s) 248, 293, 305, 349, 473, 601
HpyAV CCTTC 3 cut(s) 168, 470, 847
HpyCH4III ACNGT 2 cut(s) 369, 649
HpyCH4V TGCA 7 cut(s) 155, 276, 549, 698, 713, 770, 803
HpyF10VI GCNNNNNNNGC 7 cut(s) 110, 419, 546, 704, 713, 719, 863
HpyF3I CTNAG 4 cut(s) 86, 190, 678, 849
Hsp92II CATG 5 cut(s) 124, 202, 619, 754, 903
HspAI GCGC 1 cut(s) 780
KpnI GGTACC 1 cut(s) 152
Kzo9I GATC 5 cut(s) 289, 400, 597, 757, 877
LmnI GCTCC 2 cut(s) 35, 626
Lsp1109I GCAGC 3 cut(s) 725, 728, 731
LweI GCATC 3 cut(s) 385, 497, 515
MaeI CTAG 7 cut(s) 27, 51, 279, 324, 410, 687, 925
MalI GATC 5 cut(s) 291, 402, 599, 759, 879
MbiI CCGCTC 1 cut(s) 675
MboI GATC 5 cut(s) 289, 400, 597, 757, 877
MboII GAAGA 2 cut(s) 31, 755
MfeI CAATTG 1 cut(s) 858
MhlI GDGCHC 1 cut(s) 631
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 858
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 2 cut(s) 604, 821
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 570
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 807, 816, 914
MslI CAYNNNNRTG 1 cut(s) 119
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 638
MspR9I CCNGG 1 cut(s) 639
MunI CAATTG 1 cut(s) 858
Mva1269I GAATGC 2 cut(s) 363, 611
MvnI CGCG 1 cut(s) 780
MwoI GCNNNNNNNGC 7 cut(s) 110, 419, 546, 704, 713, 719, 863
NciI CCSGG 1 cut(s) 639
NcoI CCATGG 2 cut(s) 120, 750
NdeI CATATG 1 cut(s) 493
NdeII GATC 5 cut(s) 289, 400, 597, 757, 877
NheI GCTAGC 1 cut(s) 409
NlaIII CATG 5 cut(s) 124, 202, 619, 754, 903
NlaIV GGNNCC 2 cut(s) 150, 366
PceI AGGCCT 2 cut(s) 322, 540
PctI GAATGC 2 cut(s) 363, 611
PdmI GAANNNNTTC 1 cut(s) 570
PfeI GAWTC 1 cut(s) 90
PfoI TCCNGGA 1 cut(s) 637
PkrI GCNGC 4 cut(s) 715, 718, 721, 865
Psp124BI GAGCTC 1 cut(s) 631
PspN4I GGNNCC 2 cut(s) 150, 366
PspPI GGNCC 2 cut(s) 102, 260
PstI CTGCAG 3 cut(s) 157, 715, 805
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
RseI CAYNNNNRTG 1 cut(s) 119
SacI GAGCTC 1 cut(s) 631
SaqAI TTAA 3 cut(s) 807, 816, 914
SatI GCNGC 4 cut(s) 714, 717, 720, 864
Sau3AI GATC 5 cut(s) 289, 400, 597, 757, 877
Sau96I GGNCC 2 cut(s) 102, 260
ScrFI CCNGG 1 cut(s) 639
SduI GDGCHC 1 cut(s) 631
SfaNI GCATC 3 cut(s) 385, 497, 515
SfcI CTRYAG 5 cut(s) 153, 510, 648, 711, 801
SinI GGWCC 1 cut(s) 260
SmiMI CAYNNNNRTG 1 cut(s) 119
SmlI CTYRAG 2 cut(s) 293, 305
SmoI CTYRAG 2 cut(s) 293, 305
Sse9I AATT 1 cut(s) 858
SseBI AGGCCT 2 cut(s) 322, 540
SsiI CCGC 4 cut(s) 398, 673, 863, 866
SspMI CTAG 7 cut(s) 27, 51, 279, 324, 410, 687, 925
SstI GAGCTC 1 cut(s) 631
StuI AGGCCT 2 cut(s) 322, 540
StyD4I CCNGG 1 cut(s) 637
StyI CCWWGG 4 cut(s) 120, 141, 317, 750
TaaI ACNGT 2 cut(s) 369, 649
TaqI TCGA 1 cut(s) 760
TasI AATT 1 cut(s) 858
TauI GCSGC 1 cut(s) 866
TfiI GAWTC 1 cut(s) 90
Tru1I TTAA 3 cut(s) 807, 816, 914
Tru9I TTAA 3 cut(s) 807, 816, 914
TscAI CASTG 1 cut(s) 162
TseI GCWGC 3 cut(s) 713, 716, 719
TspDTI ATGAA 2 cut(s) 54, 604
TspGWI ACGGA 1 cut(s) 369
TspRI CASTG 1 cut(s) 162
VpaK11BI GGWCC 1 cut(s) 260
XcmI CCANNNNNNNNNTGG 2 cut(s) 142, 324
XmnI GAANNNNTTC 1 cut(s) 570
XspI CTAG 7 cut(s) 27, 51, 279, 324, 410, 687, 925
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.