Rroxscaffold_2G00112350

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014097
Physical Location & Seq
Forward (+)
37430949 .. 37438767
7819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00112350.1

Sequence Viewer

Length: 918 bp
ATGGATTTCTCCCTCATCCGGCAACCTTTTGAGGTGAAACAAAGCCCGGACCAGATCGCCACTTCCCCACGAACGGCTGGTACCCTCCTCTCCTCCCCTCACTGCGGCTACGCGGCGGTGGAGCTCAAAACCGATCCGAACGCAGCGGGAATTAGAGGTGAGACCCAAGTGGGTTGTCGGTTAAAAGGCACTGGGCATGGTGCGGATTACTTGGTGATAAGAGGAGAGCCTGTGCCTCTTGACTTTGAAGGCCCAATAATGGTTTGTACTAGAAATGATGATCTCGAGGCTGTTCTTGAGTCCACTCCAAGGCCCAGATGGAACGATTTGGTTTTTTTCCAGAACGGAATGCTGGAACCATGGCTTGAAAGTAAAGGTCTTGGTGATGCGAACCAAGTGTTAGCATATTTTGCTGTCTCCAAGCTGGGAGAACCTCCAGTTGATGGAATAACTGATACCAATCCTGAAGGACTGACAGCATCATATGGGAAGTGGGCATCTGCAGTAGCTGACAGATTACATGCTGGAGGCCTCACTTGCAAGGTTCTTGACAAGGAAGCATTTCAGAAGCAGATGTTGGAAAAGTTGATATGGATTTCAGCATTTATGCTTGTTGGAGCTCGTCATCCAGGAACAACTGTAGGTGGTGTAGAGAAAGACTACCGCTCTGAGGTTTCCAGCCTCATTGCAGAGCTTGCCACTGCAGCAGCAGCTGAGAAGGGATTGGTATTTGAAGGAGCCATGGAGGATAGATTATGTGCATACTCACGAGCTGTTGCCCACTTTCCTACTGCAGTCAAAGAGTTTAAATGGAGAAATGGTTGGTTCTATTCCCTTTCTGAAAGGGCAATTGCAGAAGGAAAGCCTGATCCATGTCCCCTACATACGGCCTGGCTCAAAGAATTGAAAATTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

305

Amino Acids

33.28

Weight (kDa)

5.49

Isoelectric Point (pI)

22.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014097)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16080
fragaria_vesca FvH4_6g28180
malus_domestica MD09G1228700.v1.1 MD17G1227100.v1.1
prunus_persica Prupe.3G104600_v2.0.a1
pyrus_communis pycom09g14760
rosa_chinensis RchiOBHm_Chr2g0132161
rosa_laevigata RLG00000019233 RLG00000019238
rosa_multiflora Rmu_sc0002005.1_g000013 Rmu_sc0009538.1_g000008
rosa_roxburghii Rroxscaffold_2G00112350
rosa_rugosa Rorug02G0302700
rosa_samantha Rh2AG355800 Rh2BG361800 Rh2DG378900
rosa_wichuraiana Rw2G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 80
AccB1I GGYRCC 1 cut(s) 80
AccB7I CCANNNNNTGG 1 cut(s) 443
AccBSI CCGCTC 1 cut(s) 666
AccII CGCG 1 cut(s) 113
AciI CCGC 6 cut(s) 105, 113, 116, 146, 203, 664
AclWI GGATC 2 cut(s) 128, 863
AcuI CTGAAG 1 cut(s) 486
AfaI GTAC 2 cut(s) 82, 268
AfiI CCNNNNNNNGG 8 cut(s) 18, 73, 104, 259, 309, 443, 670, 886
AgsI TTSAA 4 cut(s) 248, 368, 734, 907
AjnI CCWGG 2 cut(s) 628, 890
AjuI GAANNNNNNNTTGG 2 cut(s) 560, 592
AluBI AGCT 7 cut(s) 124, 424, 509, 620, 694, 713, 773
AluI AGCT 7 cut(s) 124, 424, 509, 620, 694, 713, 773
Alw21I GWGCWC 2 cut(s) 126, 622
Alw26I GTCTC 2 cut(s) 155, 421
AlwI GGATC 2 cut(s) 128, 863
AlwNI CAGNNNCTG 2 cut(s) 509, 713
Ama87I CYCGRG 1 cut(s) 284
AoxI GGCC 4 cut(s) 250, 311, 529, 888
ApeKI GCWGC 4 cut(s) 143, 704, 707, 710
Asp700I GAANNNNTTC 1 cut(s) 561
Asp718I GGTACC 1 cut(s) 80
AspS9I GGNCC 3 cut(s) 49, 251, 312
AsuC2I CCSGG 1 cut(s) 47
AsuHPI GGTGA 4 cut(s) 46, 170, 226, 395
AvaI CYCGRG 1 cut(s) 284
AvaII GGWCC 1 cut(s) 49
BanI GGYRCC 1 cut(s) 80
BanII GRGCYC 2 cut(s) 126, 622
BauI CACGAG 1 cut(s) 768
Bbv12I GWGCWC 2 cut(s) 126, 622
BbvI GCAGC 4 cut(s) 155, 716, 719, 722
BccI CCATC 2 cut(s) 312, 437
BceAI ACGGC 2 cut(s) 90, 903
BciT130I CCWGG 2 cut(s) 630, 892
BcnI CCSGG 1 cut(s) 47
BcoDI GTCTC 2 cut(s) 155, 421
BfaI CTAG 1 cut(s) 270
BfmI CTRYAG 4 cut(s) 501, 639, 702, 792
BisI GCNGC 6 cut(s) 106, 114, 144, 705, 708, 711
BlsI GCNGC 6 cut(s) 107, 115, 145, 706, 709, 712
Bme1390I CCNGG 3 cut(s) 47, 630, 892
Bme18I GGWCC 1 cut(s) 49
BmeT110I CYCGRG 1 cut(s) 284
BmgT120I GGNCC 3 cut(s) 49, 251, 312
BmiI GGNNCC 3 cut(s) 82, 357, 739
BmrFI CCNGG 3 cut(s) 47, 630, 892
BmrI ACTGGG 1 cut(s) 201
BmsI GCATC 3 cut(s) 376, 488, 506
BmuI ACTGGG 1 cut(s) 201
BpmI CTGGAG 2 cut(s) 420, 546
BpuEI CTTGAG 1 cut(s) 317
BpuMI CCSGG 1 cut(s) 47
BsaBI GATNNNNATC 1 cut(s) 459
BsaI GGTCTC 1 cut(s) 155
BsaJI CCNNGG 3 cut(s) 308, 359, 741
BsaXI ACNNNNNCTCC 4 cut(s) 216, 246, 805, 835
Bsc4I CCNNNNNNNGG 8 cut(s) 18, 73, 104, 259, 309, 443, 670, 886
Bse1I ACTGG 2 cut(s) 196, 437
Bse3DI GCAATG 1 cut(s) 684
Bse8I GATNNNNATC 1 cut(s) 459
BseBI CCWGG 2 cut(s) 630, 892
BseDI CCNNGG 3 cut(s) 308, 359, 741
BseGI GGATG 2 cut(s) 15, 625
BseJI GATNNNNATC 1 cut(s) 459
BseLI CCNNNNNNNGG 8 cut(s) 18, 73, 104, 259, 309, 443, 670, 886
BseMI GCAATG 1 cut(s) 684
BseMII CTCAG 2 cut(s) 660, 705
BseNI ACTGG 2 cut(s) 196, 437
BseRI GAGGAG 3 cut(s) 77, 82, 237
BseXI GCAGC 4 cut(s) 155, 716, 719, 722
BseYI CCCAGC 1 cut(s) 424
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 4 cut(s) 252, 313, 531, 890
BshNI GGYRCC 1 cut(s) 80
BsiHKAI GWGCWC 2 cut(s) 126, 622
BsiHKCI CYCGRG 1 cut(s) 284
BsiSI CCGG 2 cut(s) 19, 47
BslFI GGGAC 1 cut(s) 861
BslI CCNNNNNNNGG 8 cut(s) 18, 73, 104, 259, 309, 443, 670, 886
BsmAI GTCTC 2 cut(s) 155, 421
BsmFI GGGAC 1 cut(s) 861
BsmI GAATGC 1 cut(s) 354
BsnI GGCC 4 cut(s) 252, 313, 531, 890
Bso31I GGTCTC 1 cut(s) 155
BsoBI CYCGRG 1 cut(s) 284
Bsp1286I GDGCHC 2 cut(s) 126, 622
Bsp143I GATC 4 cut(s) 54, 133, 280, 868
Bsp19I CCATGG 2 cut(s) 359, 741
BspACI CCGC 6 cut(s) 105, 113, 116, 146, 203, 664
BspANI GGCC 4 cut(s) 252, 313, 531, 890
BspCNI CTCAG 2 cut(s) 661, 706
BspFNI CGCG 1 cut(s) 113
BspLI GGNNCC 3 cut(s) 82, 357, 739
BspMAI CTGCAG 3 cut(s) 505, 706, 796
BspPI GGATC 2 cut(s) 128, 863
BspT107I GGYRCC 1 cut(s) 80
BspTNI GGTCTC 1 cut(s) 155
BsrBI CCGCTC 1 cut(s) 666
BsrDI GCAATG 1 cut(s) 684
BsrI ACTGG 2 cut(s) 196, 437
BssECI CCNNGG 3 cut(s) 308, 359, 741
BssMI GATC 4 cut(s) 54, 133, 280, 868
BssSI CACGAG 1 cut(s) 768
BssT1I CCWWGG 3 cut(s) 308, 359, 741
Bst2BI CACGAG 1 cut(s) 768
Bst2UI CCWGG 2 cut(s) 630, 892
Bst4CI ACNGT 1 cut(s) 640
BstAPI GCANNNNNTGC 2 cut(s) 410, 695
BstC8I GCNNGC 1 cut(s) 696
BstDEI CTNAG 2 cut(s) 669, 714
BstDSI CCRYGG 2 cut(s) 359, 741
BstF5I GGATG 2 cut(s) 15, 625
BstFNI CGCG 1 cut(s) 113
BstKTI GATC 4 cut(s) 57, 136, 283, 871
BstMAI GTCTC 2 cut(s) 155, 421
BstMBI GATC 4 cut(s) 54, 133, 280, 868
BstMWI GCNNNNNNNGC 5 cut(s) 410, 537, 695, 704, 710
BstNI CCWGG 2 cut(s) 630, 892
BstNSI RCATGY 1 cut(s) 524
BstSCI CCNGG 3 cut(s) 45, 628, 890
BstSFI CTRYAG 4 cut(s) 501, 639, 702, 792
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 4 cut(s) 155, 716, 719, 722
BsuRI GGCC 4 cut(s) 252, 313, 531, 890
BtgI CCRYGG 2 cut(s) 359, 741
BtsCI GGATG 2 cut(s) 15, 625
BtsI GCAGTG 2 cut(s) 100, 699
BtsIMutI CAGTG 3 cut(s) 100, 189, 699
Cac8I GCNNGC 1 cut(s) 696
CaiI CAGNNNCTG 2 cut(s) 509, 713
Cfr13I GGNCC 3 cut(s) 49, 251, 312
Csp6I GTAC 2 cut(s) 81, 267
CviAII CATG 5 cut(s) 197, 360, 521, 742, 873
CviQI GTAC 2 cut(s) 81, 267
DdeI CTNAG 2 cut(s) 669, 714
DpnI GATC 4 cut(s) 56, 135, 282, 870
DpnII GATC 4 cut(s) 54, 133, 280, 868
DraI TTTAAA 1 cut(s) 808
Ecl136II GAGCTC 2 cut(s) 124, 620
Eco130I CCWWGG 3 cut(s) 308, 359, 741
Eco147I AGGCCT 1 cut(s) 531
Eco24I GRGCYC 2 cut(s) 126, 622
Eco31I GGTCTC 1 cut(s) 155
Eco47I GGWCC 1 cut(s) 49
Eco53kI GAGCTC 2 cut(s) 124, 620
Eco57I CTGAAG 1 cut(s) 486
Eco88I CYCGRG 1 cut(s) 284
EcoICRI GAGCTC 2 cut(s) 124, 620
EcoRII CCWGG 2 cut(s) 628, 890
EcoT14I CCWWGG 3 cut(s) 308, 359, 741
EcoT38I GRGCYC 2 cut(s) 126, 622
ErhI CCWWGG 3 cut(s) 308, 359, 741
FaeI CATG 5 cut(s) 200, 363, 524, 745, 876
FaqI GGGAC 1 cut(s) 861
FatI CATG 5 cut(s) 196, 359, 520, 741, 872
FauI CCCGC 1 cut(s) 139
FauNDI CATATG 1 cut(s) 484
Fnu4HI GCNGC 6 cut(s) 106, 114, 144, 705, 708, 711
FokI GGATG 2 cut(s) 2, 612
FriOI GRGCYC 2 cut(s) 126, 622
Fsp4HI GCNGC 6 cut(s) 106, 114, 144, 705, 708, 711
FspBI CTAG 1 cut(s) 270
GluI GCNGC 6 cut(s) 106, 114, 144, 705, 708, 711
GsaI CCCAGC 1 cut(s) 428
GsuI CTGGAG 2 cut(s) 420, 546
HaeIII GGCC 4 cut(s) 252, 313, 531, 890
HapII CCGG 2 cut(s) 19, 47
Hin1II CATG 5 cut(s) 200, 363, 524, 745, 876
HinfI GANTC 1 cut(s) 299
HpaII CCGG 2 cut(s) 19, 47
HphI GGTGA 4 cut(s) 46, 170, 226, 395
Hpy166II GTNNAC 1 cut(s) 303
Hpy188I TCNGA 4 cut(s) 138, 567, 670, 841
Hpy188III TCNNGA 7 cut(s) 239, 284, 296, 340, 464, 548, 768
Hpy8I GTNNAC 1 cut(s) 303
HpyAV CCTTC 5 cut(s) 242, 461, 712, 728, 851
HpyCH4III ACNGT 1 cut(s) 640
HpyCH4V TGCA 7 cut(s) 503, 540, 689, 704, 761, 794, 854
HpyF10VI GCNNNNNNNGC 5 cut(s) 410, 537, 695, 704, 710
HpyF3I CTNAG 2 cut(s) 669, 714
Hsp92II CATG 5 cut(s) 200, 363, 524, 745, 876
KpnI GGTACC 1 cut(s) 84
Kzo9I GATC 4 cut(s) 54, 133, 280, 868
LmnI GCTCC 3 cut(s) 121, 617, 737
Lsp1109I GCAGC 4 cut(s) 155, 716, 719, 722
LweI GCATC 3 cut(s) 376, 488, 506
MaeI CTAG 1 cut(s) 270
MalI GATC 4 cut(s) 56, 135, 282, 870
MbiI CCGCTC 1 cut(s) 666
MboI GATC 4 cut(s) 54, 133, 280, 868
MfeI CAATTG 1 cut(s) 849
MhlI GDGCHC 2 cut(s) 126, 622
MluCI AATT 4 cut(s) 150, 849, 902, 909
MlyI GAGTC 1 cut(s) 308
MmeI TCCRAC 2 cut(s) 558, 595
MroXI GAANNNNTTC 1 cut(s) 561
MseI TTAA 2 cut(s) 182, 807
MspA1I CMGCKG 2 cut(s) 146, 713
MspI CCGG 2 cut(s) 19, 47
MspR9I CCNGG 3 cut(s) 47, 630, 892
MunI CAATTG 1 cut(s) 849
Mva1269I GAATGC 1 cut(s) 354
MvaI CCWGG 2 cut(s) 630, 892
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 5 cut(s) 410, 537, 695, 704, 710
NciI CCSGG 1 cut(s) 47
NcoI CCATGG 2 cut(s) 359, 741
NdeI CATATG 1 cut(s) 484
NdeII GATC 4 cut(s) 54, 133, 280, 868
NlaIII CATG 5 cut(s) 200, 363, 524, 745, 876
NlaIV GGNNCC 3 cut(s) 82, 357, 739
NspI RCATGY 1 cut(s) 524
PaeR7I CTCGAG 1 cut(s) 284
PceI AGGCCT 1 cut(s) 531
PctI GAATGC 1 cut(s) 354
PdmI GAANNNNTTC 1 cut(s) 561
PflMI CCANNNNNTGG 1 cut(s) 443
PfoI TCCNGGA 1 cut(s) 628
PkrI GCNGC 6 cut(s) 107, 115, 145, 706, 709, 712
PleI GAGTC 1 cut(s) 307
PpsI GAGTC 1 cut(s) 307
Psp124BI GAGCTC 2 cut(s) 126, 622
Psp6I CCWGG 2 cut(s) 628, 890
PspFI CCCAGC 1 cut(s) 424
PspGI CCWGG 2 cut(s) 628, 890
PspN4I GGNNCC 3 cut(s) 82, 357, 739
PspPI GGNCC 3 cut(s) 49, 251, 312
PsrI GAACNNNNNNTAC 2 cut(s) 64, 96
PstI CTGCAG 3 cut(s) 505, 706, 796
PstNI CAGNNNCTG 2 cut(s) 509, 713
PvuII CAGCTG 1 cut(s) 713
RsaI GTAC 2 cut(s) 82, 268
RsaNI GTAC 2 cut(s) 81, 267
SacI GAGCTC 2 cut(s) 126, 622
SaqAI TTAA 2 cut(s) 182, 807
SatI GCNGC 6 cut(s) 106, 114, 144, 705, 708, 711
Sau3AI GATC 4 cut(s) 54, 133, 280, 868
Sau96I GGNCC 3 cut(s) 49, 251, 312
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 3 cut(s) 47, 630, 892
SduI GDGCHC 2 cut(s) 126, 622
SfaNI GCATC 3 cut(s) 376, 488, 506
SfcI CTRYAG 4 cut(s) 501, 639, 702, 792
Sfr274I CTCGAG 1 cut(s) 284
SinI GGWCC 1 cut(s) 49
SlaI CTCGAG 1 cut(s) 284
SmlI CTYRAG 2 cut(s) 284, 296
SmoI CTYRAG 2 cut(s) 284, 296
Sse9I AATT 4 cut(s) 150, 849, 902, 909
SseBI AGGCCT 1 cut(s) 531
SsiI CCGC 6 cut(s) 105, 113, 116, 146, 203, 664
SspMI CTAG 1 cut(s) 270
SstI GAGCTC 2 cut(s) 126, 622
StuI AGGCCT 1 cut(s) 531
StyD4I CCNGG 3 cut(s) 45, 628, 890
StyI CCWWGG 3 cut(s) 308, 359, 741
TaaI ACNGT 1 cut(s) 640
TaqI TCGA 1 cut(s) 285
TasI AATT 4 cut(s) 150, 849, 902, 909
TatI WGTACW 1 cut(s) 266
TauI GCSGC 2 cut(s) 108, 116
Tru1I TTAA 2 cut(s) 182, 807
Tru9I TTAA 2 cut(s) 182, 807
TscAI CASTG 3 cut(s) 107, 196, 706
TseI GCWGC 4 cut(s) 143, 704, 707, 710
TspGWI ACGGA 1 cut(s) 360
TspRI CASTG 3 cut(s) 107, 196, 706
Van91I CCANNNNNTGG 1 cut(s) 443
VpaK11BI GGWCC 1 cut(s) 49
XceI RCATGY 1 cut(s) 524
XcmI CCANNNNNNNNNTGG 1 cut(s) 315
XhoI CTCGAG 1 cut(s) 284
XmnI GAANNNNTTC 1 cut(s) 561
XspI CTAG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.