RH2AG355800

No description available

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
OG0014097
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG355800.1

Sequence Viewer

Length: 627 bp
ATGATGATCTCGAGGCTGTTCTTGAGTCCACTCCAAGGCCCAGATGGAACAAATGGAATGCTGGAACCATGGCTTGAAAGTAAAGGTCTTGGTGATGCGAACCAAGTGTTGGCATATTTTGCTGTCTCCAAGCTGGGAGAACCTCCAGTTGATGGAATAACCAATACCAATCCTGAAGGACTGACAGCATCATATGGGAAGTGGGCATCTGCAGTGGCTGACAGATTACATGCTGGAGGCCTCACTTGCAAGGTTCTTGACAAGGAAGCATTTCAGAAGCAGATGTTGGAAAAGTTGATATGGATTTCAGCATTTATGCTTGTTGGAGCTCGTCATCCAGGAACAACTGTAGGTGGTGTAGAGAAAGACTACCGCTCTGAGGTTTCCAGCCTCATTGCAGAGCTTGCCACTGCAGCAGCAGCTGAGAAGGGATTGGTATTTGAAGGAGCCATGGAGGATAGATTATGTGCATACTCACGAGCTGTTGCCCACTTTCCTACTGCAGTCAAGGAGTTTAAATGGAGAAATGGTTGGTTCTATTCCCTTTCTGAAAGGGCAATTGCAGAAGGAAAGCCTGATCCATGTCCCCTACATACGGCTTGGCTCAAAGAATTGAAAATTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

22.66

Weight (kDa)

6.11

Isoelectric Point (pI)

15.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014097)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16080
fragaria_vesca FvH4_6g28180
malus_domestica MD09G1228700.v1.1 MD17G1227100.v1.1
prunus_persica Prupe.3G104600_v2.0.a1
pyrus_communis pycom09g14760
rosa_chinensis RchiOBHm_Chr2g0132161
rosa_laevigata RLG00000019233 RLG00000019238
rosa_multiflora Rmu_sc0002005.1_g000013 Rmu_sc0009538.1_g000008
rosa_roxburghii Rroxscaffold_2G00112350
rosa_rugosa Rorug02G0302700
rosa_samantha Rh2AG355800 Rh2BG361800 Rh2DG378900
rosa_wichuraiana Rw2G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 109, 152
AccBSI CCGCTC 1 cut(s) 375
AciI CCGC 1 cut(s) 373
AclWI GGATC 1 cut(s) 572
AcuI CTGAAG 1 cut(s) 195
AfiI CCNNNNNNNGG 5 cut(s) 35, 109, 152, 379, 595
AgsI TTSAA 3 cut(s) 77, 443, 616
AjnI CCWGG 1 cut(s) 337
AjuI GAANNNNNNNTTGG 4 cut(s) 92, 124, 269, 301
AluBI AGCT 5 cut(s) 133, 329, 403, 422, 482
AluI AGCT 5 cut(s) 133, 329, 403, 422, 482
Alw21I GWGCWC 1 cut(s) 331
Alw26I GTCTC 1 cut(s) 130
AlwI GGATC 1 cut(s) 572
AlwNI CAGNNNCTG 2 cut(s) 218, 422
Ama87I CYCGRG 1 cut(s) 10
AoxI GGCC 2 cut(s) 37, 238
ApeKI GCWGC 3 cut(s) 413, 416, 419
Asp700I GAANNNNTTC 1 cut(s) 270
AspS9I GGNCC 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 104
AvaI CYCGRG 1 cut(s) 10
BanII GRGCYC 1 cut(s) 331
BauI CACGAG 1 cut(s) 477
Bbv12I GWGCWC 1 cut(s) 331
BbvI GCAGC 3 cut(s) 425, 428, 431
BccI CCATC 2 cut(s) 38, 146
BceAI ACGGC 1 cut(s) 612
BciT130I CCWGG 1 cut(s) 339
BcoDI GTCTC 1 cut(s) 130
BfmI CTRYAG 4 cut(s) 210, 348, 411, 501
BisI GCNGC 3 cut(s) 414, 417, 420
BlsI GCNGC 3 cut(s) 415, 418, 421
Bme1390I CCNGG 1 cut(s) 339
BmeT110I CYCGRG 1 cut(s) 10
BmgT120I GGNCC 1 cut(s) 38
BmiI GGNNCC 2 cut(s) 66, 448
BmrFI CCNGG 1 cut(s) 339
BmsI GCATC 3 cut(s) 85, 197, 215
BpmI CTGGAG 2 cut(s) 129, 255
BpuEI CTTGAG 1 cut(s) 43
BsaJI CCNNGG 3 cut(s) 34, 68, 450
BsaXI ACNNNNNCTCC 2 cut(s) 514, 544
Bsc4I CCNNNNNNNGG 5 cut(s) 35, 109, 152, 379, 595
Bse1I ACTGG 1 cut(s) 146
Bse3DI GCAATG 1 cut(s) 393
BseBI CCWGG 1 cut(s) 339
BseDI CCNNGG 3 cut(s) 34, 68, 450
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 5 cut(s) 35, 109, 152, 379, 595
BseMI GCAATG 1 cut(s) 393
BseMII CTCAG 2 cut(s) 369, 414
BseNI ACTGG 1 cut(s) 146
BseXI GCAGC 3 cut(s) 425, 428, 431
BseYI CCCAGC 1 cut(s) 133
BshFI GGCC 2 cut(s) 39, 240
BsiHKAI GWGCWC 1 cut(s) 331
BsiHKCI CYCGRG 1 cut(s) 10
BslFI GGGAC 1 cut(s) 570
BslI CCNNNNNNNGG 5 cut(s) 35, 109, 152, 379, 595
BsmAI GTCTC 1 cut(s) 130
BsmFI GGGAC 1 cut(s) 570
BsmI GAATGC 1 cut(s) 63
BsnI GGCC 2 cut(s) 39, 240
BsoBI CYCGRG 1 cut(s) 10
Bsp1286I GDGCHC 1 cut(s) 331
Bsp143I GATC 2 cut(s) 6, 577
Bsp19I CCATGG 2 cut(s) 68, 450
BspACI CCGC 1 cut(s) 373
BspANI GGCC 2 cut(s) 39, 240
BspCNI CTCAG 2 cut(s) 370, 415
BspLI GGNNCC 2 cut(s) 66, 448
BspMAI CTGCAG 3 cut(s) 214, 415, 505
BspPI GGATC 1 cut(s) 572
BsrBI CCGCTC 1 cut(s) 375
BsrDI GCAATG 1 cut(s) 393
BsrI ACTGG 1 cut(s) 146
BssECI CCNNGG 3 cut(s) 34, 68, 450
BssMI GATC 2 cut(s) 6, 577
BssSI CACGAG 1 cut(s) 477
BssT1I CCWWGG 3 cut(s) 34, 68, 450
Bst2BI CACGAG 1 cut(s) 477
Bst2UI CCWGG 1 cut(s) 339
Bst4CI ACNGT 1 cut(s) 349
BstAPI GCANNNNNTGC 2 cut(s) 119, 404
BstC8I GCNNGC 1 cut(s) 405
BstDEI CTNAG 2 cut(s) 378, 423
BstDSI CCRYGG 2 cut(s) 68, 450
BstF5I GGATG 1 cut(s) 334
BstKTI GATC 2 cut(s) 9, 580
BstMAI GTCTC 1 cut(s) 130
BstMBI GATC 2 cut(s) 6, 577
BstMWI GCNNNNNNNGC 5 cut(s) 119, 246, 404, 413, 419
BstNI CCWGG 1 cut(s) 339
BstNSI RCATGY 1 cut(s) 233
BstSCI CCNGG 1 cut(s) 337
BstSFI CTRYAG 4 cut(s) 210, 348, 411, 501
BstV1I GCAGC 3 cut(s) 425, 428, 431
BsuRI GGCC 2 cut(s) 39, 240
BtgI CCRYGG 2 cut(s) 68, 450
BtsCI GGATG 1 cut(s) 334
BtsI GCAGTG 2 cut(s) 219, 408
BtsIMutI CAGTG 2 cut(s) 219, 408
Cac8I GCNNGC 1 cut(s) 405
CaiI CAGNNNCTG 2 cut(s) 218, 422
Cfr13I GGNCC 1 cut(s) 38
CviAII CATG 4 cut(s) 69, 230, 451, 582
DdeI CTNAG 2 cut(s) 378, 423
DpnI GATC 2 cut(s) 8, 579
DpnII GATC 2 cut(s) 6, 577
DraI TTTAAA 1 cut(s) 517
Ecl136II GAGCTC 1 cut(s) 329
Eco130I CCWWGG 3 cut(s) 34, 68, 450
Eco147I AGGCCT 1 cut(s) 240
Eco24I GRGCYC 1 cut(s) 331
Eco53kI GAGCTC 1 cut(s) 329
Eco57I CTGAAG 1 cut(s) 195
Eco88I CYCGRG 1 cut(s) 10
EcoICRI GAGCTC 1 cut(s) 329
EcoRII CCWGG 1 cut(s) 337
EcoT14I CCWWGG 3 cut(s) 34, 68, 450
EcoT38I GRGCYC 1 cut(s) 331
ErhI CCWWGG 3 cut(s) 34, 68, 450
FaeI CATG 4 cut(s) 72, 233, 454, 585
FaqI GGGAC 1 cut(s) 570
FatI CATG 4 cut(s) 68, 229, 450, 581
FauNDI CATATG 1 cut(s) 193
Fnu4HI GCNGC 3 cut(s) 414, 417, 420
FokI GGATG 1 cut(s) 321
FriOI GRGCYC 1 cut(s) 331
Fsp4HI GCNGC 3 cut(s) 414, 417, 420
GluI GCNGC 3 cut(s) 414, 417, 420
GsaI CCCAGC 1 cut(s) 137
GsuI CTGGAG 2 cut(s) 129, 255
HaeIII GGCC 2 cut(s) 39, 240
Hin1II CATG 4 cut(s) 72, 233, 454, 585
HinfI GANTC 1 cut(s) 25
HphI GGTGA 1 cut(s) 104
Hpy166II GTNNAC 1 cut(s) 29
Hpy188I TCNGA 3 cut(s) 276, 379, 550
Hpy188III TCNNGA 5 cut(s) 10, 22, 173, 257, 477
Hpy8I GTNNAC 1 cut(s) 29
HpyAV CCTTC 4 cut(s) 170, 421, 437, 560
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4V TGCA 7 cut(s) 212, 249, 398, 413, 470, 503, 563
HpyF10VI GCNNNNNNNGC 5 cut(s) 119, 246, 404, 413, 419
HpyF3I CTNAG 2 cut(s) 378, 423
Hsp92II CATG 4 cut(s) 72, 233, 454, 585
Kzo9I GATC 2 cut(s) 6, 577
LmnI GCTCC 2 cut(s) 326, 446
Lsp1109I GCAGC 3 cut(s) 425, 428, 431
LweI GCATC 3 cut(s) 85, 197, 215
MalI GATC 2 cut(s) 8, 579
MbiI CCGCTC 1 cut(s) 375
MboI GATC 2 cut(s) 6, 577
MfeI CAATTG 1 cut(s) 558
MhlI GDGCHC 1 cut(s) 331
MluCI AATT 3 cut(s) 558, 611, 618
MlyI GAGTC 1 cut(s) 34
MmeI TCCRAC 2 cut(s) 267, 304
MnlI CCTC 7 cut(s) 6, 153, 230, 251, 373, 401, 448
MroXI GAANNNNTTC 1 cut(s) 270
MseI TTAA 1 cut(s) 516
MspA1I CMGCKG 1 cut(s) 422
MspR9I CCNGG 1 cut(s) 339
MunI CAATTG 1 cut(s) 558
Mva1269I GAATGC 1 cut(s) 63
MvaI CCWGG 1 cut(s) 339
MwoI GCNNNNNNNGC 5 cut(s) 119, 246, 404, 413, 419
NcoI CCATGG 2 cut(s) 68, 450
NdeI CATATG 1 cut(s) 193
NdeII GATC 2 cut(s) 6, 577
NlaIII CATG 4 cut(s) 72, 233, 454, 585
NlaIV GGNNCC 2 cut(s) 66, 448
NspI RCATGY 1 cut(s) 233
PaeR7I CTCGAG 1 cut(s) 10
PceI AGGCCT 1 cut(s) 240
PctI GAATGC 1 cut(s) 63
PdmI GAANNNNTTC 1 cut(s) 270
PflMI CCANNNNNTGG 2 cut(s) 109, 152
PfoI TCCNGGA 1 cut(s) 337
PkrI GCNGC 3 cut(s) 415, 418, 421
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
Psp124BI GAGCTC 1 cut(s) 331
Psp6I CCWGG 1 cut(s) 337
PspFI CCCAGC 1 cut(s) 133
PspGI CCWGG 1 cut(s) 337
PspN4I GGNNCC 2 cut(s) 66, 448
PspPI GGNCC 1 cut(s) 38
PstI CTGCAG 3 cut(s) 214, 415, 505
PstNI CAGNNNCTG 2 cut(s) 218, 422
PvuII CAGCTG 1 cut(s) 422
SacI GAGCTC 1 cut(s) 331
SaqAI TTAA 1 cut(s) 516
SatI GCNGC 3 cut(s) 414, 417, 420
Sau3AI GATC 2 cut(s) 6, 577
Sau96I GGNCC 1 cut(s) 38
SchI GAGTC 1 cut(s) 34
ScrFI CCNGG 1 cut(s) 339
SduI GDGCHC 1 cut(s) 331
SfaNI GCATC 3 cut(s) 85, 197, 215
SfcI CTRYAG 4 cut(s) 210, 348, 411, 501
Sfr274I CTCGAG 1 cut(s) 10
SlaI CTCGAG 1 cut(s) 10
SmlI CTYRAG 2 cut(s) 10, 22
SmoI CTYRAG 2 cut(s) 10, 22
Sse9I AATT 3 cut(s) 558, 611, 618
SseBI AGGCCT 1 cut(s) 240
SsiI CCGC 1 cut(s) 373
SstI GAGCTC 1 cut(s) 331
StuI AGGCCT 1 cut(s) 240
StyD4I CCNGG 1 cut(s) 337
StyI CCWWGG 3 cut(s) 34, 68, 450
TaaI ACNGT 1 cut(s) 349
TaqI TCGA 1 cut(s) 11
TasI AATT 3 cut(s) 558, 611, 618
Tru1I TTAA 1 cut(s) 516
Tru9I TTAA 1 cut(s) 516
TscAI CASTG 2 cut(s) 219, 415
TseI GCWGC 3 cut(s) 413, 416, 419
TspRI CASTG 2 cut(s) 219, 415
Van91I CCANNNNNTGG 2 cut(s) 109, 152
XceI RCATGY 1 cut(s) 233
XcmI CCANNNNNNNNNTGG 1 cut(s) 41
XhoI CTCGAG 1 cut(s) 10
XmnI GAANNNNTTC 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.