Rmu_sc0009538.1_g000008

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009538.1
OG0014097
Physical Location & Seq
Forward (+)
34469 .. 38696
4228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009538.1_g000008.1.cds

Sequence Viewer

Length: 1086 bp
atggccagcatgacactcacactctctagttccactctcttccacctcacgacaaaacccagttcgagactcgctctaagaattagagccaaagcctccacagccactgccatggcttccatatccagcaaaaccaaggtggtgcctgcagtcatcgtcggcgccggaagggttgggaaggccttaaatgacatgggcaatggtgatgacttgctggtcaaaagaggagagcctgtgcctcttgactttgaaggcccaataatggtttgtactagaaatgatgatctcgaggctgttcttgagtccactccaaggcccagatggaacgatttggtttttttccagaacggaatgctggaaccatggcttgaaagtaaaggtcttggtgatgcgaaccaagtgttagcatattttgctgtctccaagctgggagaacctccagttgatggaataactgataccaatcctgaaggactgacagcatcatatgggaagtgggcatctgcagtagctgacagattacatgctggaggcctcacttgcaaggttcttggcaaggaagcatttcagaagcagatgttggaaaagttgatatggatttcagcattcatgcttgttggagctcgtcatccaggagcaactgtaagtggtgtagagaaagataccgctctgaggtttccagcctcattgcagagcttgccactgcagcagctgctgagaagtgattggtatttgaaggagccatggaggatagattatgtgcgtactcacgagctgttgcccactttcctactgcagtcaaagaggtcagagatgaatactagtatatttgcatttattgtttccagcctcattgcagagcttgccactgcagcagcagctgagaagggattggtatttgaaggagccatggaggatagattatgtgcatactcacgagctgttgcccactttcctactgcagtcaaagagtttaaatggagaaatggttggttctattccctttctgaaagggcaattgcagaaggaaagcctgatccatgtcccctacatacggcatggctcaaagaattgaaaattatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

361

Amino Acids

39.61

Weight (kDa)

8.56

Isoelectric Point (pI)

31.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014097)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16080
fragaria_vesca FvH4_6g28180
malus_domestica MD09G1228700.v1.1 MD17G1227100.v1.1
prunus_persica Prupe.3G104600_v2.0.a1
pyrus_communis pycom09g14760
rosa_chinensis RchiOBHm_Chr2g0132161
rosa_laevigata RLG00000019233 RLG00000019238
rosa_multiflora Rmu_sc0002005.1_g000013 Rmu_sc0009538.1_g000008
rosa_roxburghii Rroxscaffold_2G00112350
rosa_rugosa Rorug02G0302700
rosa_samantha Rh2AG355800 Rh2BG361800 Rh2DG378900
rosa_wichuraiana Rw2G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 215
AccB1I GGYRCC 2 cut(s) 142, 161
AccB7I CCANNNNNTGG 1 cut(s) 446
AccBSI CCGCTC 1 cut(s) 668
AciI CCGC 1 cut(s) 666
AclWI GGATC 1 cut(s) 1031
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 489
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 2 cut(s) 271, 766
AfiI CCNNNNNNNGG 5 cut(s) 262, 312, 446, 672, 1054
AgsI TTSAA 5 cut(s) 251, 371, 736, 902, 1075
AhlI ACTAGT 1 cut(s) 821
AjnI CCWGG 1 cut(s) 631
AjuI GAANNNNNNNTTGG 2 cut(s) 563, 595
AluBI AGCT 9 cut(s) 427, 512, 623, 696, 712, 775, 862, 881, 941
AluI AGCT 9 cut(s) 427, 512, 623, 696, 712, 775, 862, 881, 941
Alw21I GWGCWC 1 cut(s) 625
Alw26I GTCTC 2 cut(s) 61, 424
AlwI GGATC 1 cut(s) 1031
AlwNI CAGNNNCTG 5 cut(s) 107, 512, 712, 715, 881
Ama87I CYCGRG 1 cut(s) 287
AoxI GGCC 5 cut(s) 3, 180, 253, 314, 532
ApeKI GCWGC 6 cut(s) 706, 709, 712, 872, 875, 878
Asp700I GAANNNNTTC 1 cut(s) 564
AspLEI GCGC 1 cut(s) 164
AspS9I GGNCC 2 cut(s) 254, 315
AsuHPI GGTGA 2 cut(s) 215, 398
AvaI CYCGRG 1 cut(s) 287
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 142, 161
BanII GRGCYC 1 cut(s) 625
BauI CACGAG 2 cut(s) 770, 936
Bbv12I GWGCWC 1 cut(s) 625
BbvI GCAGC 6 cut(s) 699, 718, 721, 884, 887, 890
BccI CCATC 2 cut(s) 315, 440
BceAI ACGGC 1 cut(s) 1071
BciT130I CCWGG 1 cut(s) 633
BcoDI GTCTC 2 cut(s) 61, 424
BcuI ACTAGT 1 cut(s) 821
BfaI CTAG 3 cut(s) 27, 273, 822
BfmI CTRYAG 6 cut(s) 147, 504, 704, 794, 870, 960
BfoI RGCGCY 1 cut(s) 165
BisI GCNGC 6 cut(s) 707, 710, 713, 873, 876, 879
BlsI GCNGC 6 cut(s) 708, 711, 714, 874, 877, 880
Bme1390I CCNGG 1 cut(s) 633
BmeT110I CYCGRG 1 cut(s) 287
BmgT120I GGNCC 2 cut(s) 254, 315
BmiI GGNNCC 5 cut(s) 144, 163, 360, 741, 907
BmrFI CCNGG 1 cut(s) 633
BmrI ACTGGG 1 cut(s) 54
BmsI GCATC 3 cut(s) 379, 491, 509
BmuI ACTGGG 1 cut(s) 54
BplI GAGNNNNNCTC 2 cut(s) 58, 90
BpmI CTGGAG 2 cut(s) 423, 549
BpuEI CTTGAG 1 cut(s) 320
BsaBI GATNNNNATC 1 cut(s) 462
BsaHI GRCGYC 1 cut(s) 162
BsaJI CCNNGG 6 cut(s) 111, 135, 311, 362, 743, 909
BsaXI ACNNNNNCTCC 6 cut(s) 219, 249, 627, 657, 973, 1003
Bsc4I CCNNNNNNNGG 5 cut(s) 262, 312, 446, 672, 1054
Bse1I ACTGG 2 cut(s) 60, 440
Bse3DI GCAATG 3 cut(s) 205, 686, 852
Bse8I GATNNNNATC 1 cut(s) 462
BseBI CCWGG 1 cut(s) 633
BseDI CCNNGG 6 cut(s) 111, 135, 311, 362, 743, 909
BseGI GGATG 1 cut(s) 628
BseJI GATNNNNATC 1 cut(s) 462
BseLI CCNNNNNNNGG 5 cut(s) 262, 312, 446, 672, 1054
BseMI GCAATG 3 cut(s) 205, 686, 852
BseMII CTCAG 3 cut(s) 662, 707, 873
BseNI ACTGG 2 cut(s) 60, 440
BseRI GAGGAG 1 cut(s) 240
BseXI GCAGC 6 cut(s) 699, 718, 721, 884, 887, 890
BseYI CCCAGC 1 cut(s) 427
BshFI GGCC 5 cut(s) 5, 182, 255, 316, 534
BshNI GGYRCC 2 cut(s) 142, 161
BsiHKAI GWGCWC 1 cut(s) 625
BsiHKCI CYCGRG 1 cut(s) 287
BsiSI CCGG 1 cut(s) 165
BslFI GGGAC 1 cut(s) 1029
BslI CCNNNNNNNGG 5 cut(s) 262, 312, 446, 672, 1054
BsmAI GTCTC 2 cut(s) 61, 424
BsmFI GGGAC 1 cut(s) 1029
BsmI GAATGC 2 cut(s) 357, 605
BsnI GGCC 5 cut(s) 5, 182, 255, 316, 534
BsoBI CYCGRG 1 cut(s) 287
Bsp1286I GDGCHC 1 cut(s) 625
Bsp143I GATC 2 cut(s) 283, 1036
Bsp19I CCATGG 4 cut(s) 111, 362, 743, 909
BspACI CCGC 1 cut(s) 666
BspANI GGCC 5 cut(s) 5, 182, 255, 316, 534
BspCNI CTCAG 3 cut(s) 663, 708, 874
BspLI GGNNCC 5 cut(s) 144, 163, 360, 741, 907
BspMAI CTGCAG 6 cut(s) 151, 508, 708, 798, 874, 964
BspPI GGATC 1 cut(s) 1031
BspT107I GGYRCC 2 cut(s) 142, 161
BsrBI CCGCTC 1 cut(s) 668
BsrDI GCAATG 3 cut(s) 205, 686, 852
BsrI ACTGG 2 cut(s) 60, 440
BssECI CCNNGG 6 cut(s) 111, 135, 311, 362, 743, 909
BssMI GATC 2 cut(s) 283, 1036
BssNI GRCGYC 1 cut(s) 162
BssSI CACGAG 2 cut(s) 770, 936
BssT1I CCWWGG 6 cut(s) 111, 135, 311, 362, 743, 909
Bst2BI CACGAG 2 cut(s) 770, 936
Bst2UI CCWGG 1 cut(s) 633
Bst4CI ACNGT 1 cut(s) 643
Bst6I CTCTTC 1 cut(s) 44
BstACI GRCGYC 1 cut(s) 162
BstAPI GCANNNNNTGC 4 cut(s) 413, 697, 712, 863
BstC8I GCNNGC 4 cut(s) 7, 147, 698, 864
BstDEI CTNAG 4 cut(s) 77, 671, 716, 882
BstDSI CCRYGG 4 cut(s) 111, 362, 743, 909
BstF5I GGATG 1 cut(s) 628
BstH2I RGCGCY 1 cut(s) 165
BstHHI GCGC 1 cut(s) 164
BstKTI GATC 2 cut(s) 286, 1039
BstMAI GTCTC 2 cut(s) 61, 424
BstMBI GATC 2 cut(s) 283, 1036
BstMWI GCNNNNNNNGC 9 cut(s) 101, 413, 540, 697, 706, 712, 863, 872, 878
BstNI CCWGG 1 cut(s) 633
BstNSI RCATGY 1 cut(s) 527
BstSCI CCNGG 1 cut(s) 631
BstSFI CTRYAG 6 cut(s) 147, 504, 704, 794, 870, 960
BstV1I GCAGC 6 cut(s) 699, 718, 721, 884, 887, 890
BstXI CCANNNNNNTGG 1 cut(s) 112
BsuRI GGCC 5 cut(s) 5, 182, 255, 316, 534
BtgI CCRYGG 4 cut(s) 111, 362, 743, 909
BtsCI GGATG 1 cut(s) 628
BtsI GCAGTG 3 cut(s) 105, 701, 867
BtsIMutI CAGTG 3 cut(s) 105, 701, 867
Cac8I GCNNGC 4 cut(s) 7, 147, 698, 864
CaiI CAGNNNCTG 5 cut(s) 107, 512, 712, 715, 881
CfoI GCGC 1 cut(s) 164
Cfr13I GGNCC 2 cut(s) 254, 315
Csp6I GTAC 2 cut(s) 270, 765
CviQI GTAC 2 cut(s) 270, 765
DdeI CTNAG 4 cut(s) 77, 671, 716, 882
DinI GGCGCC 1 cut(s) 163
DpnI GATC 2 cut(s) 285, 1038
DpnII GATC 2 cut(s) 283, 1036
DraI TTTAAA 1 cut(s) 976
DrdI GACNNNNNNGTC 1 cut(s) 215
DseDI GACNNNNNNGTC 1 cut(s) 215
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Ecl136II GAGCTC 1 cut(s) 623
Eco130I CCWWGG 6 cut(s) 111, 135, 311, 362, 743, 909
Eco147I AGGCCT 2 cut(s) 182, 534
Eco24I GRGCYC 1 cut(s) 625
Eco53kI GAGCTC 1 cut(s) 623
Eco57I CTGAAG 1 cut(s) 489
Eco88I CYCGRG 1 cut(s) 287
EcoICRI GAGCTC 1 cut(s) 623
EcoRII CCWGG 1 cut(s) 631
EcoT14I CCWWGG 6 cut(s) 111, 135, 311, 362, 743, 909
EcoT38I GRGCYC 1 cut(s) 625
EgeI GGCGCC 1 cut(s) 163
EheI GGCGCC 1 cut(s) 163
ErhI CCWWGG 6 cut(s) 111, 135, 311, 362, 743, 909
FaqI GGGAC 1 cut(s) 1029
FauNDI CATATG 1 cut(s) 487
Fnu4HI GCNGC 6 cut(s) 707, 710, 713, 873, 876, 879
FokI GGATG 1 cut(s) 615
FriOI GRGCYC 1 cut(s) 625
Fsp4HI GCNGC 6 cut(s) 707, 710, 713, 873, 876, 879
FspBI CTAG 3 cut(s) 27, 273, 822
GlaI GCGC 1 cut(s) 163
GluI GCNGC 6 cut(s) 707, 710, 713, 873, 876, 879
GsaI CCCAGC 1 cut(s) 431
GsuI CTGGAG 2 cut(s) 423, 549
HaeII RGCGCY 1 cut(s) 165
HaeIII GGCC 5 cut(s) 5, 182, 255, 316, 534
HapII CCGG 1 cut(s) 165
HhaI GCGC 1 cut(s) 164
Hin1I GRCGYC 1 cut(s) 162
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HinfI GANTC 2 cut(s) 69, 302
HpaII CCGG 1 cut(s) 165
HphI GGTGA 2 cut(s) 215, 398
Hpy166II GTNNAC 1 cut(s) 306
Hpy188I TCNGA 4 cut(s) 570, 672, 811, 1009
Hpy188III TCNNGA 9 cut(s) 49, 66, 242, 287, 299, 343, 467, 770, 936
Hpy8I GTNNAC 1 cut(s) 306
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 8 cut(s) 162, 172, 245, 464, 730, 880, 896, 1019
HpyCH4III ACNGT 1 cut(s) 643
HpyF10VI GCNNNNNNNGC 9 cut(s) 101, 413, 540, 697, 706, 712, 863, 872, 878
HpyF3I CTNAG 4 cut(s) 77, 671, 716, 882
Hsp92I GRCGYC 1 cut(s) 162
HspAI GCGC 1 cut(s) 162
KasI GGCGCC 1 cut(s) 161
Kzo9I GATC 2 cut(s) 283, 1036
LmnI GCTCC 4 cut(s) 620, 635, 739, 905
Lsp1109I GCAGC 6 cut(s) 699, 718, 721, 884, 887, 890
LweI GCATC 3 cut(s) 379, 491, 509
MaeI CTAG 3 cut(s) 27, 273, 822
MalI GATC 2 cut(s) 285, 1038
MbiI CCGCTC 1 cut(s) 668
MboI GATC 2 cut(s) 283, 1036
MboII GAAGA 1 cut(s) 31
MfeI CAATTG 1 cut(s) 1017
MhlI GDGCHC 1 cut(s) 625
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 81, 1017, 1070, 1077
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 162
MlyI GAGTC 2 cut(s) 63, 311
MmeI TCCRAC 2 cut(s) 561, 598
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 564
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 185, 975
MslI CAYNNNNRTG 1 cut(s) 110
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 712, 881
MspI CCGG 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 633
MunI CAATTG 1 cut(s) 1017
Mva1269I GAATGC 2 cut(s) 357, 605
MvaI CCWGG 1 cut(s) 633
MwoI GCNNNNNNNGC 9 cut(s) 101, 413, 540, 697, 706, 712, 863, 872, 878
NarI GGCGCC 1 cut(s) 162
NcoI CCATGG 4 cut(s) 111, 362, 743, 909
NdeI CATATG 1 cut(s) 487
NdeII GATC 2 cut(s) 283, 1036
NlaIV GGNNCC 5 cut(s) 144, 163, 360, 741, 907
NspI RCATGY 1 cut(s) 527
PaeR7I CTCGAG 1 cut(s) 287
PceI AGGCCT 2 cut(s) 182, 534
PctI GAATGC 2 cut(s) 357, 605
PdmI GAANNNNTTC 1 cut(s) 564
PflMI CCANNNNNTGG 1 cut(s) 446
PfoI TCCNGGA 1 cut(s) 631
PkrI GCNGC 6 cut(s) 708, 711, 714, 874, 877, 880
PleI GAGTC 2 cut(s) 63, 310
PluTI GGCGCC 1 cut(s) 165
PpsI GAGTC 2 cut(s) 63, 310
Psp124BI GAGCTC 1 cut(s) 625
Psp6I CCWGG 1 cut(s) 631
PspFI CCCAGC 1 cut(s) 427
PspGI CCWGG 1 cut(s) 631
PspN4I GGNNCC 5 cut(s) 144, 163, 360, 741, 907
PspPI GGNCC 2 cut(s) 254, 315
PstI CTGCAG 6 cut(s) 151, 508, 708, 798, 874, 964
PstNI CAGNNNCTG 5 cut(s) 107, 512, 712, 715, 881
PvuII CAGCTG 2 cut(s) 712, 881
RsaI GTAC 2 cut(s) 271, 766
RsaNI GTAC 2 cut(s) 270, 765
RseI CAYNNNNRTG 1 cut(s) 110
SacI GAGCTC 1 cut(s) 625
SaqAI TTAA 2 cut(s) 185, 975
SatI GCNGC 6 cut(s) 707, 710, 713, 873, 876, 879
Sau3AI GATC 2 cut(s) 283, 1036
Sau96I GGNCC 2 cut(s) 254, 315
SchI GAGTC 2 cut(s) 63, 311
ScrFI CCNGG 1 cut(s) 633
SduI GDGCHC 1 cut(s) 625
SfaNI GCATC 3 cut(s) 379, 491, 509
SfcI CTRYAG 6 cut(s) 147, 504, 704, 794, 870, 960
SfoI GGCGCC 1 cut(s) 163
Sfr274I CTCGAG 1 cut(s) 287
SlaI CTCGAG 1 cut(s) 287
SmiMI CAYNNNNRTG 1 cut(s) 110
SmlI CTYRAG 2 cut(s) 287, 299
SmoI CTYRAG 2 cut(s) 287, 299
SpeI ACTAGT 1 cut(s) 821
Sse9I AATT 4 cut(s) 81, 1017, 1070, 1077
SseBI AGGCCT 2 cut(s) 182, 534
SsiI CCGC 1 cut(s) 666
SspDI GGCGCC 1 cut(s) 161
SspMI CTAG 3 cut(s) 27, 273, 822
SstI GAGCTC 1 cut(s) 625
StuI AGGCCT 2 cut(s) 182, 534
StyD4I CCNGG 1 cut(s) 631
StyI CCWWGG 6 cut(s) 111, 135, 311, 362, 743, 909
TaaI ACNGT 1 cut(s) 643
TaqI TCGA 2 cut(s) 65, 288
TasI AATT 4 cut(s) 81, 1017, 1070, 1077
TatI WGTACW 1 cut(s) 269
Tru1I TTAA 2 cut(s) 185, 975
Tru9I TTAA 2 cut(s) 185, 975
TscAI CASTG 3 cut(s) 112, 708, 874
TseI GCWGC 6 cut(s) 706, 709, 712, 872, 875, 878
TspDTI ATGAA 2 cut(s) 598, 830
TspGWI ACGGA 1 cut(s) 363
TspRI CASTG 3 cut(s) 112, 708, 874
Van91I CCANNNNNTGG 1 cut(s) 446
XceI RCATGY 1 cut(s) 527
XcmI CCANNNNNNNNNTGG 1 cut(s) 318
XhoI CTCGAG 1 cut(s) 287
XmnI GAANNNNTTC 1 cut(s) 564
XspI CTAG 3 cut(s) 27, 273, 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.