RLG00000019238

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0014097
Physical Location & Seq
Reverse (-)
48793071 .. 48800622
7552 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019238

Sequence Viewer

Length: 678 bp
ATGGCCAACATGACACTCACACTCTCTAGTTCCACTCTCGTCCGCCTCACAACAAAACCCACTTTGAGACTCTCTCTAACAATCAGAGCCAAAGCCTCCACAGCCACTGCCATGGCCTCCATATCCACCAAAACCAAGGTGGTGCCTGCAGTCATTGTCGGCGCTGGAAGGGTTGGGAAGGCCTTAAATGACATGGGCAATGGTGATGACTTGCTGGTCAAAAGAGGAGAGCCTGTGCCTCTTGACTTTGAAGGCCCATTAATGGTTTGCACTAGAACTGATGATCTCGAGGCTGTTCTTGAGTCCACTCCAAGGCCCAGATGGAACAGACCTGTCTGTGGTGAAGGTCTGAAGTACTCTCAGTCGAAACAGCAGATTATAGCTTTTGTGCTGACAAACATTAATGGAATGCTGGAACCATGGCTTGAAAGTAAAGGTCTTGGTGATGCGAACCAAGTGTTGGCATATTTTGCTGTCTCCAAGCTGGGAGAACCTCCAGTTCTTGACAAGGAAGCATTTCAGAAGCAGATGTTGGAAAAGTTGATATGGATTTCAGCATTCATGCCTGTTGGAGCTTGTCATCCAGGAGCAACTGTAGGTGGTGTAGAGAAAGACTACCGCTCTGAGGTTTCCAGCCTCATTGCAGAGCTTGCCACTGCAGCAGCTGCTGAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

24.09

Weight (kDa)

8.4

Isoelectric Point (pI)

37.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014097)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16080
fragaria_vesca FvH4_6g28180
malus_domestica MD09G1228700.v1.1 MD17G1227100.v1.1
prunus_persica Prupe.3G104600_v2.0.a1
pyrus_communis pycom09g14760
rosa_chinensis RchiOBHm_Chr2g0132161
rosa_laevigata RLG00000019233 RLG00000019238
rosa_multiflora Rmu_sc0002005.1_g000013 Rmu_sc0009538.1_g000008
rosa_roxburghii Rroxscaffold_2G00112350
rosa_rugosa Rorug02G0302700
rosa_samantha Rh2AG355800 Rh2BG361800 Rh2DG378900
rosa_wichuraiana Rw2G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 215
AccB1I GGYRCC 1 cut(s) 142
AccB7I CCANNNNNTGG 1 cut(s) 460
AccBSI CCGCTC 1 cut(s) 621
AciI CCGC 2 cut(s) 43, 619
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 371
AfaI GTAC 1 cut(s) 356
AfiI CCNNNNNNNGG 5 cut(s) 262, 312, 338, 460, 625
AgsI TTSAA 2 cut(s) 251, 428
AjnI CCWGG 1 cut(s) 583
AjuI GAANNNNNNNTTGG 4 cut(s) 443, 475, 515, 547
AluBI AGCT 5 cut(s) 383, 484, 575, 649, 665
AluI AGCT 5 cut(s) 383, 484, 575, 649, 665
Alw26I GTCTC 2 cut(s) 61, 481
AlwNI CAGNNNCTG 3 cut(s) 107, 665, 668
Ama87I CYCGRG 1 cut(s) 287
AoxI GGCC 5 cut(s) 3, 114, 180, 253, 314
ApeKI GCWGC 3 cut(s) 659, 662, 665
AseI ATTAAT 2 cut(s) 260, 402
Asp700I GAANNNNTTC 1 cut(s) 516
AspLEI GCGC 1 cut(s) 164
AspS9I GGNCC 2 cut(s) 254, 315
AsuHPI GGTGA 3 cut(s) 215, 353, 455
AvaI CYCGRG 1 cut(s) 287
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 142
BbvI GCAGC 3 cut(s) 652, 671, 674
BccI CCATC 1 cut(s) 315
BciT130I CCWGG 1 cut(s) 585
BcoDI GTCTC 2 cut(s) 61, 481
BfaI CTAG 2 cut(s) 27, 273
BfmI CTRYAG 3 cut(s) 147, 594, 657
BfoI RGCGCY 1 cut(s) 165
BisI GCNGC 3 cut(s) 660, 663, 666
BlsI GCNGC 3 cut(s) 661, 664, 667
BmcAI AGTACT 1 cut(s) 356
Bme1390I CCNGG 1 cut(s) 585
BmeT110I CYCGRG 1 cut(s) 287
BmgT120I GGNCC 2 cut(s) 254, 315
BmiI GGNNCC 2 cut(s) 144, 417
BmrFI CCNGG 1 cut(s) 585
BmsI GCATC 1 cut(s) 436
BplI GAGNNNNNCTC 2 cut(s) 58, 90
BpmI CTGGAG 1 cut(s) 480
BpuEI CTTGAG 1 cut(s) 320
BsaJI CCNNGG 4 cut(s) 111, 135, 311, 419
BsaXI ACNNNNNCTCC 4 cut(s) 219, 249, 579, 609
Bsc4I CCNNNNNNNGG 5 cut(s) 262, 312, 338, 460, 625
Bse1I ACTGG 1 cut(s) 497
Bse3DI GCAATG 2 cut(s) 205, 639
BseBI CCWGG 1 cut(s) 585
BseDI CCNNGG 4 cut(s) 111, 135, 311, 419
BseGI GGATG 1 cut(s) 580
BseLI CCNNNNNNNGG 5 cut(s) 262, 312, 338, 460, 625
BseMI GCAATG 2 cut(s) 205, 639
BseMII CTCAG 3 cut(s) 374, 615, 660
BseNI ACTGG 1 cut(s) 497
BseRI GAGGAG 1 cut(s) 240
BseXI GCAGC 3 cut(s) 652, 671, 674
BseYI CCCAGC 1 cut(s) 484
BshFI GGCC 5 cut(s) 5, 116, 182, 255, 316
BshNI GGYRCC 1 cut(s) 142
BsiHKCI CYCGRG 1 cut(s) 287
BslI CCNNNNNNNGG 5 cut(s) 262, 312, 338, 460, 625
BsmAI GTCTC 2 cut(s) 61, 481
BsmI GAATGC 2 cut(s) 414, 557
BsnI GGCC 5 cut(s) 5, 116, 182, 255, 316
BsoBI CYCGRG 1 cut(s) 287
Bsp143I GATC 1 cut(s) 283
Bsp19I CCATGG 2 cut(s) 111, 419
BspACI CCGC 2 cut(s) 43, 619
BspANI GGCC 5 cut(s) 5, 116, 182, 255, 316
BspCNI CTCAG 3 cut(s) 373, 616, 661
BspLI GGNNCC 2 cut(s) 144, 417
BspMAI CTGCAG 2 cut(s) 151, 661
BspT107I GGYRCC 1 cut(s) 142
BsrBI CCGCTC 1 cut(s) 621
BsrDI GCAATG 2 cut(s) 205, 639
BsrI ACTGG 1 cut(s) 497
BssECI CCNNGG 4 cut(s) 111, 135, 311, 419
BssMI GATC 1 cut(s) 283
BssT1I CCWWGG 4 cut(s) 111, 135, 311, 419
Bst2UI CCWGG 1 cut(s) 585
Bst4CI ACNGT 1 cut(s) 595
BstAPI GCANNNNNTGC 3 cut(s) 470, 650, 665
BstC8I GCNNGC 2 cut(s) 147, 651
BstDEI CTNAG 3 cut(s) 360, 624, 669
BstDSI CCRYGG 2 cut(s) 111, 419
BstF5I GGATG 1 cut(s) 580
BstH2I RGCGCY 1 cut(s) 165
BstHHI GCGC 1 cut(s) 164
BstKTI GATC 1 cut(s) 286
BstMAI GTCTC 2 cut(s) 61, 481
BstMBI GATC 1 cut(s) 283
BstMWI GCNNNNNNNGC 5 cut(s) 101, 470, 650, 659, 665
BstNI CCWGG 1 cut(s) 585
BstSCI CCNGG 1 cut(s) 583
BstSFI CTRYAG 3 cut(s) 147, 594, 657
BstV1I GCAGC 3 cut(s) 652, 671, 674
BstXI CCANNNNNNTGG 1 cut(s) 112
BsuRI GGCC 5 cut(s) 5, 116, 182, 255, 316
BtgI CCRYGG 2 cut(s) 111, 419
BtsCI GGATG 1 cut(s) 580
BtsI GCAGTG 2 cut(s) 105, 654
BtsIMutI CAGTG 2 cut(s) 105, 654
Cac8I GCNNGC 2 cut(s) 147, 651
CaiI CAGNNNCTG 3 cut(s) 107, 665, 668
CfoI GCGC 1 cut(s) 164
Cfr13I GGNCC 2 cut(s) 254, 315
Csp6I GTAC 1 cut(s) 355
CviAII CATG 5 cut(s) 10, 112, 193, 420, 562
CviQI GTAC 1 cut(s) 355
DdeI CTNAG 3 cut(s) 360, 624, 669
DpnI GATC 1 cut(s) 285
DpnII GATC 1 cut(s) 283
DrdI GACNNNNNNGTC 1 cut(s) 215
DseDI GACNNNNNNGTC 1 cut(s) 215
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 32
Eco130I CCWWGG 4 cut(s) 111, 135, 311, 419
Eco147I AGGCCT 1 cut(s) 182
Eco57I CTGAAG 1 cut(s) 371
Eco88I CYCGRG 1 cut(s) 287
EcoRII CCWGG 1 cut(s) 583
EcoT14I CCWWGG 4 cut(s) 111, 135, 311, 419
ErhI CCWWGG 4 cut(s) 111, 135, 311, 419
FaeI CATG 5 cut(s) 13, 115, 196, 423, 565
FaiI YATR 9 cut(s) 11, 113, 122, 194, 380, 421, 466, 547, 563
FatI CATG 5 cut(s) 9, 111, 192, 419, 561
Fnu4HI GCNGC 3 cut(s) 660, 663, 666
FokI GGATG 1 cut(s) 567
Fsp4HI GCNGC 3 cut(s) 660, 663, 666
FspBI CTAG 2 cut(s) 27, 273
GlaI GCGC 1 cut(s) 163
GluI GCNGC 3 cut(s) 660, 663, 666
GsaI CCCAGC 1 cut(s) 488
GsuI CTGGAG 1 cut(s) 480
HaeII RGCGCY 1 cut(s) 165
HaeIII GGCC 5 cut(s) 5, 116, 182, 255, 316
HhaI GCGC 1 cut(s) 164
Hin1II CATG 5 cut(s) 13, 115, 196, 423, 565
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HinfI GANTC 2 cut(s) 69, 302
HphI GGTGA 3 cut(s) 215, 353, 455
Hpy166II GTNNAC 1 cut(s) 306
Hpy188I TCNGA 4 cut(s) 86, 351, 522, 625
Hpy188III TCNNGA 4 cut(s) 242, 287, 299, 503
Hpy8I GTNNAC 1 cut(s) 306
HpyAV CCTTC 4 cut(s) 162, 172, 245, 338
HpyCH4III ACNGT 1 cut(s) 595
HpyCH4V TGCA 4 cut(s) 149, 270, 644, 659
HpyF10VI GCNNNNNNNGC 5 cut(s) 101, 470, 650, 659, 665
HpyF3I CTNAG 3 cut(s) 360, 624, 669
Hsp92II CATG 5 cut(s) 13, 115, 196, 423, 565
HspAI GCGC 1 cut(s) 162
Kzo9I GATC 1 cut(s) 283
LmnI GCTCC 2 cut(s) 572, 587
Lsp1109I GCAGC 3 cut(s) 652, 671, 674
LweI GCATC 1 cut(s) 436
MaeI CTAG 2 cut(s) 27, 273
MalI GATC 1 cut(s) 285
MbiI CCGCTC 1 cut(s) 621
MboI GATC 1 cut(s) 283
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 63, 311
MmeI TCCRAC 2 cut(s) 513, 550
MnlI CCTC 9 cut(s) 56, 106, 127, 218, 249, 283, 504, 619, 647
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 516
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 185, 260, 402
MslI CAYNNNNRTG 1 cut(s) 110
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 665
MspR9I CCNGG 1 cut(s) 585
Mva1269I GAATGC 2 cut(s) 414, 557
MvaI CCWGG 1 cut(s) 585
MwoI GCNNNNNNNGC 5 cut(s) 101, 470, 650, 659, 665
NcoI CCATGG 2 cut(s) 111, 419
NdeII GATC 1 cut(s) 283
NlaIII CATG 5 cut(s) 13, 115, 196, 423, 565
NlaIV GGNNCC 2 cut(s) 144, 417
PaeR7I CTCGAG 1 cut(s) 287
PceI AGGCCT 1 cut(s) 182
PctI GAATGC 2 cut(s) 414, 557
PdmI GAANNNNTTC 1 cut(s) 516
PflMI CCANNNNNTGG 1 cut(s) 460
PfoI TCCNGGA 1 cut(s) 583
PkrI GCNGC 3 cut(s) 661, 664, 667
PleI GAGTC 2 cut(s) 63, 310
PpsI GAGTC 2 cut(s) 63, 310
PshBI ATTAAT 2 cut(s) 260, 402
Psp6I CCWGG 1 cut(s) 583
PspFI CCCAGC 1 cut(s) 484
PspGI CCWGG 1 cut(s) 583
PspN4I GGNNCC 2 cut(s) 144, 417
PspPI GGNCC 2 cut(s) 254, 315
PstI CTGCAG 2 cut(s) 151, 661
PstNI CAGNNNCTG 3 cut(s) 107, 665, 668
PvuII CAGCTG 1 cut(s) 665
RsaI GTAC 1 cut(s) 356
RsaNI GTAC 1 cut(s) 355
RseI CAYNNNNRTG 1 cut(s) 110
SaqAI TTAA 3 cut(s) 185, 260, 402
SatI GCNGC 3 cut(s) 660, 663, 666
Sau3AI GATC 1 cut(s) 283
Sau96I GGNCC 2 cut(s) 254, 315
ScaI AGTACT 1 cut(s) 356
SchI GAGTC 2 cut(s) 63, 311
ScrFI CCNGG 1 cut(s) 585
SfaNI GCATC 1 cut(s) 436
SfcI CTRYAG 3 cut(s) 147, 594, 657
Sfr274I CTCGAG 1 cut(s) 287
SlaI CTCGAG 1 cut(s) 287
SmiMI CAYNNNNRTG 1 cut(s) 110
SmlI CTYRAG 2 cut(s) 287, 299
SmoI CTYRAG 2 cut(s) 287, 299
SseBI AGGCCT 1 cut(s) 182
SsiI CCGC 2 cut(s) 43, 619
SspMI CTAG 2 cut(s) 27, 273
StuI AGGCCT 1 cut(s) 182
StyD4I CCNGG 1 cut(s) 583
StyI CCWWGG 4 cut(s) 111, 135, 311, 419
TaaI ACNGT 1 cut(s) 595
TaqI TCGA 2 cut(s) 288, 365
TatI WGTACW 1 cut(s) 354
Tru1I TTAA 3 cut(s) 185, 260, 402
Tru9I TTAA 3 cut(s) 185, 260, 402
TscAI CASTG 2 cut(s) 112, 661
TseI GCWGC 3 cut(s) 659, 662, 665
TspDTI ATGAA 1 cut(s) 550
TspRI CASTG 2 cut(s) 112, 661
Van91I CCANNNNNTGG 1 cut(s) 460
VspI ATTAAT 2 cut(s) 260, 402
XcmI CCANNNNNNNNNTGG 2 cut(s) 136, 318
XhoI CTCGAG 1 cut(s) 287
XmnI GAANNNNTTC 1 cut(s) 516
XspI CTAG 2 cut(s) 27, 273
ZrmI AGTACT 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.