AT1G16290

Transglycosylase SLT domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012112
Physical Location & Seq
Reverse (-)
5570753 .. 5573958
3206 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G16290.1

Sequence Viewer

Length: 1260 bp
ATGGCCAACAGTTTCACGTTCTGGAATGATTGTGTTGAGCCAGAGGATTTAGAAGAAATGTGGATGGATCCTGCGGTCAGTGCTGAATGGATTGATGTTGGAGAGACTAAAGGCCAGAAGGTTCACCTCTCAAGGGATCCTGATGGTCAGCCTTATCTTACACAGACCGAGATGAGGGCTGTTTCTGATATAACTGTCCGGAGGCATTTTGATTCCATCTTGGATTCGGAAATGATATGTGCAATTGCTGAGCTTGAAAGTGACCGAAAGCCTCTCATTATGCGGTACAGCAAAAAGACCAAAGAAACTGGCCTTGGAATTTTACAAGTTTTCGAAAAGACAGCAGCATGGTTGGCTGGGGGCCAAGGCTATCAGGCATATAATGTAGATGACAATCCTGATCTTCTTCACAAGCCCTTTATAAATGTGTACTTTGGGGCAGCTTACCTGAAATGGTTAACAGACTATCAGAATAACCAGAGAAGTGAAGAGTTTGTTGTCAGAGCATACAATGGTGGGACAAAAAAGGCGACTCACAAGTCGACATTGCCATATTGGAAACGATACCTTGCAGTGAAAGAAAGTCTCCCTTCAAGAAAACATGGCGATGCTGGCCCTTCAAGCTTTCGTCCTACGAATCCCGCTTCCCCAGGCTCAAACACCGATTTCACATACTGGGACTCTCGAGCTTCCCCCGAAGATATGGAAGATATGTGGAATCAGTCTGAAATATGTAAAGAGTGGACAAAATCTAAAGAAGAAAGGGGAAAGGTTCGTTTTTCACAAGATGGTGAAAAGAGGCCTTACCTTTCTCGAGGGGAACTTAAGGCTGTTGCAGAAATAATTGTTTCAAAGTACTTCAGCACGAAAGGAATTAGAGTTCCTCTTGTTTGTGCGATTGCTGATACTGTGTGCATGCGGTTTGTGAACGGTATTAAGAAACATGTAGGAATACTCGGAGTGGACTACTCAACCGCTTCATGGTTATACTCGGAGCTAGGATACCGAGCATACAGAGTCGATTCAGCAGACGATCTAACCAAACCATTTATCTCTATGTACTTTGGTGTAGCCTATTTGGTTTGGTTATCGGAATATGAAGGAAGTCAAAGAAGTAATCAATTCATTGTCCAAGCATATATGAAAGGTCCTGACCACGTCGATCTTGAGGAATCATGTCCACTCTGGCTCAAGTTCGAGCAAGCTCTGAGTTACTATGAAGAGTCCAAGAGGGATTCAGGAAGCTGCGTTATCCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SLT

Protein Analysis

419

Amino Acids

47.94

Weight (kDa)

5.48

Isoelectric Point (pI)

40.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SLT PF01464 75 - 182 3e-12 Transglycosylase SLT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012112)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16290 AT1G16290
fragaria_vesca FvH4_3g14650
malus_domestica MD05G1234300.v1.1 MD10G1210800.v1.1
prunus_persica Prupe.4G131800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0024141
rosa_laevigata RLG00000032772
rosa_multiflora Rmu_sc0004033.1_g000015
rosa_roxburghii Rroxscaffold_1G00055100 Rroxscaffold_1G00055680
rosa_rugosa Rorug05G0081800 Rorug05G0081800 Rorug05G0081900
rosa_samantha Rh5AG172500 Rh5BG169100 Rh5CG184800 Rh5DG171300
rosa_wichuraiana Rw5G015560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 422
AasI GACNNNNNNGTC 1 cut(s) 538
AccI GTMKAC 1 cut(s) 542
AccIII TCCGGA 1 cut(s) 198
AciI CCGC 5 cut(s) 74, 283, 642, 919, 975
AclWI GGATC 4 cut(s) 62, 75, 131, 144
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 318
AcuI CTGAAG 1 cut(s) 844
AfaI GTAC 4 cut(s) 287, 431, 857, 1061
AfiI CCNNNNNNNGG 3 cut(s) 133, 174, 981
AflII CTTAAG 1 cut(s) 824
AflIII ACRYGT 1 cut(s) 943
AgsI TTSAA 4 cut(s) 257, 594, 621, 852
AjiI CACGTC 1 cut(s) 1159
AjnI CCWGG 1 cut(s) 649
AjuI GAANNNNNNNTTGG 2 cut(s) 297, 329
AloI GAACNNNNNNTCC 2 cut(s) 864, 896
AluBI AGCT 7 cut(s) 253, 443, 624, 689, 997, 1205, 1245
AluI AGCT 7 cut(s) 253, 443, 624, 689, 997, 1205, 1245
Alw26I GTCTC 2 cut(s) 98, 590
AlwI GGATC 4 cut(s) 62, 75, 131, 144
Ama87I CYCGRG 2 cut(s) 684, 813
Aor13HI TCCGGA 1 cut(s) 198
AoxI GGCC 6 cut(s) 3, 112, 310, 361, 613, 800
ApeKI GCWGC 3 cut(s) 344, 440, 1245
ApoI RAATTY 1 cut(s) 318
AspS9I GGNCC 3 cut(s) 361, 614, 1148
AsuHPI GGTGA 2 cut(s) 116, 803
AsuII TTCGAA 1 cut(s) 333
AvaI CYCGRG 2 cut(s) 684, 813
AvaII GGWCC 1 cut(s) 1148
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 2 cut(s) 67, 136
BbvI GCAGC 3 cut(s) 356, 452, 1232
BccI CCATC 4 cut(s) 58, 137, 224, 782
BciT130I CCWGG 1 cut(s) 651
BciVI GTATCC 1 cut(s) 995
BcoDI GTCTC 2 cut(s) 98, 590
BfaI CTAG 1 cut(s) 998
BfrI CTTAAG 1 cut(s) 824
BfuI GTATCC 1 cut(s) 995
BisI GCNGC 3 cut(s) 345, 441, 1246
BlpI GCTNAGC 1 cut(s) 249
BlsI GCNGC 3 cut(s) 346, 442, 1247
BmcAI AGTACT 1 cut(s) 857
Bme1390I CCNGG 1 cut(s) 651
Bme18I GGWCC 1 cut(s) 1148
BmeT110I CYCGRG 2 cut(s) 684, 813
BmgBI CACGTC 1 cut(s) 1159
BmgT120I GGNCC 3 cut(s) 361, 614, 1148
BmiI GGNNCC 3 cut(s) 69, 138, 362
BmrFI CCNGG 1 cut(s) 651
BmrI ACTGGG 1 cut(s) 685
BmsI GCATC 1 cut(s) 598
BmuI ACTGGG 1 cut(s) 685
Bpu1102I GCTNAGC 1 cut(s) 249
Bpu14I TTCGAA 1 cut(s) 333
BpuEI CTTGAG 3 cut(s) 115, 1175, 1187
BsaBI GATNNNNATC 1 cut(s) 393
BsaJI CCNNGG 3 cut(s) 313, 364, 649
BsaWI WCCGGW 1 cut(s) 198
Bsc4I CCNNNNNNNGG 3 cut(s) 133, 174, 981
Bse1I ACTGG 2 cut(s) 313, 680
Bse3DI GCAATG 1 cut(s) 545
Bse8I GATNNNNATC 1 cut(s) 393
BseAI TCCGGA 1 cut(s) 198
BseBI CCWGG 1 cut(s) 651
BseDI CCNNGG 3 cut(s) 313, 364, 649
BseGI GGATG 1 cut(s) 69
BseJI GATNNNNATC 1 cut(s) 393
BseLI CCNNNNNNNGG 3 cut(s) 133, 174, 981
BseMI GCAATG 1 cut(s) 545
BseMII CTCAG 2 cut(s) 240, 1199
BseNI ACTGG 2 cut(s) 313, 680
BseXI GCAGC 3 cut(s) 356, 452, 1232
BseYI CCCAGC 1 cut(s) 356
BshFI GGCC 6 cut(s) 5, 114, 312, 363, 615, 802
BsiHKCI CYCGRG 2 cut(s) 684, 813
BsiSI CCGG 1 cut(s) 199
BslFI GGGAC 2 cut(s) 532, 692
BslI CCNNNNNNNGG 3 cut(s) 133, 174, 981
BsmAI GTCTC 2 cut(s) 98, 590
BsmFI GGGAC 2 cut(s) 532, 692
BsnI GGCC 6 cut(s) 5, 114, 312, 363, 615, 802
BsoBI CYCGRG 2 cut(s) 684, 813
Bsp119I TTCGAA 1 cut(s) 333
Bsp13I TCCGGA 1 cut(s) 198
Bsp143I GATC 5 cut(s) 67, 136, 400, 1033, 1162
Bsp1720I GCTNAGC 1 cut(s) 249
BspACI CCGC 5 cut(s) 74, 283, 642, 919, 975
BspANI GGCC 6 cut(s) 5, 114, 312, 363, 615, 802
BspCNI CTCAG 2 cut(s) 241, 1200
BspEI TCCGGA 1 cut(s) 198
BspLI GGNNCC 3 cut(s) 69, 138, 362
BspPI GGATC 4 cut(s) 62, 75, 131, 144
BspT104I TTCGAA 1 cut(s) 333
BspTI CTTAAG 1 cut(s) 824
BsrDI GCAATG 1 cut(s) 545
BsrI ACTGG 2 cut(s) 313, 680
BssECI CCNNGG 3 cut(s) 313, 364, 649
BssMI GATC 5 cut(s) 67, 136, 400, 1033, 1162
BssT1I CCWWGG 2 cut(s) 313, 364
Bst2UI CCWGG 1 cut(s) 651
Bst4CI ACNGT 4 cut(s) 11, 196, 910, 932
Bst6I CTCTTC 2 cut(s) 483, 1215
BstAFI CTTAAG 1 cut(s) 824
BstBI TTCGAA 1 cut(s) 333
BstC8I GCNNGC 3 cut(s) 613, 917, 1203
BstDEI CTNAG 2 cut(s) 249, 1208
BstF5I GGATG 1 cut(s) 69
BstKTI GATC 5 cut(s) 70, 139, 403, 1036, 1165
BstMAI GTCTC 2 cut(s) 98, 590
BstMBI GATC 5 cut(s) 67, 136, 400, 1033, 1162
BstMWI GCNNNNNNNGC 4 cut(s) 80, 353, 612, 621
BstNI CCWGG 1 cut(s) 651
BstNSI RCATGY 2 cut(s) 919, 947
BstSCI CCNGG 1 cut(s) 649
BstV1I GCAGC 3 cut(s) 356, 452, 1232
BstX2I RGATCY 2 cut(s) 67, 136
BstYI RGATCY 2 cut(s) 67, 136
BsuI GTATCC 1 cut(s) 995
BsuRI GGCC 6 cut(s) 5, 114, 312, 363, 615, 802
BtgZI GCGATG 1 cut(s) 621
BtrI CACGTC 1 cut(s) 1159
BtsCI GGATG 1 cut(s) 69
BtsI GCAGTG 1 cut(s) 579
BtsIMutI CAGTG 2 cut(s) 85, 579
Cac8I GCNNGC 3 cut(s) 613, 917, 1203
Cfr13I GGNCC 3 cut(s) 361, 614, 1148
Csp6I GTAC 4 cut(s) 286, 430, 856, 1060
CviAII CATG 6 cut(s) 348, 602, 916, 944, 981, 1176
CviQI GTAC 4 cut(s) 286, 430, 856, 1060
DdeI CTNAG 2 cut(s) 249, 1208
DpnI GATC 5 cut(s) 69, 138, 402, 1035, 1164
DpnII GATC 5 cut(s) 67, 136, 400, 1033, 1162
DrdI GACNNNNNNGTC 1 cut(s) 538
DseDI GACNNNNNNGTC 1 cut(s) 538
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 483, 1215
EarI CTCTTC 2 cut(s) 483, 1215
Eco130I CCWWGG 2 cut(s) 313, 364
Eco147I AGGCCT 1 cut(s) 802
Eco47I GGWCC 1 cut(s) 1148
Eco57I CTGAAG 1 cut(s) 844
Eco88I CYCGRG 2 cut(s) 684, 813
EcoO109I RGGNCCY 1 cut(s) 1148
EcoRII CCWGG 1 cut(s) 649
EcoT14I CCWWGG 2 cut(s) 313, 364
ErhI CCWWGG 2 cut(s) 313, 364
FaeI CATG 6 cut(s) 351, 605, 919, 947, 984, 1179
FalI AAGNNNNNCTT 2 cut(s) 574, 606
FaqI GGGAC 2 cut(s) 532, 692
FatI CATG 6 cut(s) 347, 601, 915, 943, 980, 1175
FauI CCCGC 1 cut(s) 649
FblI GTMKAC 1 cut(s) 542
Fnu4HI GCNGC 3 cut(s) 345, 441, 1246
FokI GGATG 1 cut(s) 76
Fsp4HI GCNGC 3 cut(s) 345, 441, 1246
FspBI CTAG 1 cut(s) 998
GluI GCNGC 3 cut(s) 345, 441, 1246
GsaI CCCAGC 1 cut(s) 360
HaeIII GGCC 6 cut(s) 5, 114, 312, 363, 615, 802
HapII CCGG 1 cut(s) 199
Hin1II CATG 6 cut(s) 351, 605, 919, 947, 984, 1179
HincII GTYRAC 2 cut(s) 459, 543
HindII GTYRAC 2 cut(s) 459, 543
HindIII AAGCTT 1 cut(s) 622
HpaI GTTAAC 1 cut(s) 459
HpaII CCGG 1 cut(s) 199
HphI GGTGA 2 cut(s) 116, 803
Hpy166II GTNNAC 8 cut(s) 124, 430, 459, 543, 744, 928, 964, 1181
Hpy188I TCNGA 9 cut(s) 187, 229, 471, 503, 727, 959, 994, 1093, 1209
Hpy8I GTNNAC 8 cut(s) 124, 430, 459, 543, 744, 928, 964, 1181
Hpy99I CGWCG 1 cut(s) 1163
HpyAV CCTTC 4 cut(s) 112, 600, 627, 1094
HpyCH4III ACNGT 4 cut(s) 11, 196, 910, 932
HpyCH4IV ACGT 2 cut(s) 17, 1158
HpyCH4V TGCA 4 cut(s) 242, 572, 836, 915
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 353, 612, 621
HpyF3I CTNAG 2 cut(s) 249, 1208
HpySE526I ACGT 2 cut(s) 17, 1158
Hsp92II CATG 6 cut(s) 351, 605, 919, 947, 984, 1179
Kpn2I TCCGGA 1 cut(s) 198
KspAI GTTAAC 1 cut(s) 459
Kzo9I GATC 5 cut(s) 67, 136, 400, 1033, 1162
LmnI GCTCC 1 cut(s) 994
Lsp1109I GCAGC 3 cut(s) 356, 452, 1232
LweI GCATC 1 cut(s) 598
MaeI CTAG 1 cut(s) 998
MaeII ACGT 2 cut(s) 17, 1158
MaeIII GTNAC 2 cut(s) 260, 1211
MalI GATC 5 cut(s) 69, 138, 402, 1035, 1164
MboI GATC 5 cut(s) 67, 136, 400, 1033, 1162
MboII GAAGA 8 cut(s) 65, 395, 398, 500, 710, 719, 770, 1232
MfeI CAATTG 1 cut(s) 243
MflI RGATCY 2 cut(s) 67, 136
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 243, 318, 843, 873, 1121
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 4 cut(s) 526, 674, 1026, 1232
MmeI TCCRAC 1 cut(s) 79
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 198
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 458, 825, 936
MslI CAYNNNNRTG 1 cut(s) 606
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 1 cut(s) 824
MspI CCGG 1 cut(s) 199
MspR9I CCNGG 1 cut(s) 651
MunI CAATTG 1 cut(s) 243
MvaI CCWGG 1 cut(s) 651
MwoI GCNNNNNNNGC 4 cut(s) 80, 353, 612, 621
NdeII GATC 5 cut(s) 67, 136, 400, 1033, 1162
NlaIII CATG 6 cut(s) 351, 605, 919, 947, 984, 1179
NlaIV GGNNCC 3 cut(s) 69, 138, 362
NmuCI GTSAC 1 cut(s) 260
NspI RCATGY 2 cut(s) 919, 947
NspV TTCGAA 1 cut(s) 333
PaeI GCATGC 1 cut(s) 919
PaeR7I CTCGAG 2 cut(s) 684, 813
PceI AGGCCT 1 cut(s) 802
PciI ACATGT 1 cut(s) 943
PfeI GAWTC 7 cut(s) 212, 224, 637, 718, 1022, 1172, 1235
PflFI GACNNNGTC 1 cut(s) 1157
PkrI GCNGC 3 cut(s) 346, 442, 1247
PleI GAGTC 4 cut(s) 526, 674, 1025, 1231
PpsI GAGTC 4 cut(s) 526, 674, 1025, 1231
PpuMI RGGWCCY 1 cut(s) 1148
PscI ACATGT 1 cut(s) 943
PsiI TTATAA 1 cut(s) 422
Psp5II RGGWCCY 1 cut(s) 1148
Psp6I CCWGG 1 cut(s) 649
PspFI CCCAGC 1 cut(s) 356
PspGI CCWGG 1 cut(s) 649
PspN4I GGNNCC 3 cut(s) 69, 138, 362
PspPI GGNCC 3 cut(s) 361, 614, 1148
PspPPI RGGWCCY 1 cut(s) 1148
PsuI RGATCY 2 cut(s) 67, 136
PsyI GACNNNGTC 1 cut(s) 1157
RsaI GTAC 4 cut(s) 287, 431, 857, 1061
RsaNI GTAC 4 cut(s) 286, 430, 856, 1060
RseI CAYNNNNRTG 1 cut(s) 606
SalI GTCGAC 1 cut(s) 541
SaqAI TTAA 3 cut(s) 458, 825, 936
SatI GCNGC 3 cut(s) 345, 441, 1246
Sau3AI GATC 5 cut(s) 67, 136, 400, 1033, 1162
Sau96I GGNCC 3 cut(s) 361, 614, 1148
ScaI AGTACT 1 cut(s) 857
SchI GAGTC 4 cut(s) 526, 674, 1026, 1232
ScrFI CCNGG 1 cut(s) 651
SfaNI GCATC 1 cut(s) 598
Sfr274I CTCGAG 2 cut(s) 684, 813
SfuI TTCGAA 1 cut(s) 333
SinI GGWCC 1 cut(s) 1148
SlaI CTCGAG 2 cut(s) 684, 813
SmiMI CAYNNNNRTG 1 cut(s) 606
SmlI CTYRAG 6 cut(s) 130, 684, 813, 824, 1166, 1190
SmoI CTYRAG 6 cut(s) 130, 684, 813, 824, 1166, 1190
SphI GCATGC 1 cut(s) 919
Sse9I AATT 5 cut(s) 243, 318, 843, 873, 1121
SseBI AGGCCT 1 cut(s) 802
SsiI CCGC 5 cut(s) 74, 283, 642, 919, 975
SspMI CTAG 1 cut(s) 998
StuI AGGCCT 1 cut(s) 802
StyD4I CCNGG 1 cut(s) 649
StyI CCWWGG 2 cut(s) 313, 364
TaaI ACNGT 4 cut(s) 11, 196, 910, 932
TaiI ACGT 2 cut(s) 20, 1161
TaqI TCGA 7 cut(s) 333, 542, 685, 814, 1020, 1161, 1197
TaqII GACCGA 2 cut(s) 182, 279
TasI AATT 5 cut(s) 243, 318, 843, 873, 1121
TatI WGTACW 3 cut(s) 429, 855, 1059
TfiI GAWTC 7 cut(s) 212, 224, 637, 718, 1022, 1172, 1235
Tru1I TTAA 3 cut(s) 458, 825, 936
Tru9I TTAA 3 cut(s) 458, 825, 936
TscAI CASTG 2 cut(s) 85, 579
TseFI GTSAC 1 cut(s) 260
TseI GCWGC 3 cut(s) 344, 440, 1245
Tsp45I GTSAC 1 cut(s) 260
TspDTI ATGAA 5 cut(s) 969, 1113, 1114, 1157, 1233
TspRI CASTG 2 cut(s) 85, 579
Tth111I GACNNNGTC 1 cut(s) 1157
Vha464I CTTAAG 1 cut(s) 824
VpaK11BI GGWCC 1 cut(s) 1148
XapI RAATTY 1 cut(s) 318
XceI RCATGY 2 cut(s) 919, 947
XhoI CTCGAG 2 cut(s) 684, 813
XmiI GTMKAC 1 cut(s) 542
XspI CTAG 1 cut(s) 998
ZrmI AGTACT 1 cut(s) 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.