MD05G1234300.v1.1

Transglycosylase SLT domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
36656656 .. 36661579
4924 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1234300.v1.1.491

Sequence Viewer

Length: 1293 bp
ATGGCTGCCAGCTATAAATATTGGGATTACTGTGTTGATCCCCACGACCTGGAAGAATTGTGGAGTAGTCCCTGTGTGGCTGCAGAATGGTTAGATGTTGGAGAGACCAAAGGCCAGAAAGTTCACCTCTCGCGCGATCCCGATGGAAATGCTTATTTGACACAGACCGAAATGAAGGCTGTGGCTGAGATCATCATCCGCCGGCATTTTGGTTCACAAATAGATCCTGATATGATTTGTGCTATTGCAGACCTTCAAAGTGATAGACAACCCCTTGCTACGCGGTATGATAAAAAAGCTAAGTCCACCTCTGTAGGGATCATGCAACTTTTTCCAAAAACAGCTGACTGGCTAGCTAGTGATTTGGGTTACCATTCATATGATGTTCAAGGGGATCACGATCTTCTGTTCAAGCCTTTTGTAAATGTATATTTTGGTGCTGCGTATCTTAAATGGTTAGCAAAATTTGAGAACAAAGAAAGAAGTGAAGAATTCATAATTAGGGCATATAAAGGTGGTACCAAGAAGGCAACTCACAAATCAACTTTGCCATATTGGCAACGGTATCGCTTAGTCAAAGAAAGTCTTCCATCCAGAAAAAGTTTTGAAGGTCATCCATCTCCAATTCATGGCTCCGCTTCTAAAACCCATCATGCTGCGCCGTCTGCACCCTCACACGATGCAGGTCATCATGTTTATTGGGATGTCAGAGCGTCCCCAGAAGACATGGAGGAAATGTGGAATCGTCATGACGTCTCTAAAGAGTGGACCAAGACTGGAGAGAAAAAGGGAAAAGTACGATTTTCCATTGACGAAAAGAAAAGACCATATCTTTCTCATGTAGAACTGAAGGCAGTTGCAGATATCATACTCACAAAACACTTCAGTACAAAGCCAATTAAACCTTCAGTTCTTTGTGCTCTTGCAGAGGTTATTAGCTTGCGTTTCCTGAATGGTGTCGGACCACGTGCTGGAATTATGGGAATCGACTATTCTACAGCTTCATGGCTCTACAACGAGATGGGCTTTAGAGCATATAATCCTAATCAAGGTGATGATCTTAGCAAGCCATTTTTCTCGATGTACTTTGGTGCAGCCTATTTAGTATGGTTAGCGGAATATGAAGGGAGCTCAAGAACTCCGGAGTTCGTTGTTCAGGCTTATATCTTGGGGCCAAAGAATGTGAATCCTCAGGATTCAGGTCCGCAGTGGCTCAAGTTTGAGCAAGCCTTGAGCCACTATGAGGACGTGAAAAAGTTTCGAGAGGAGTACGGGAGCTGCACTATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

431

Amino Acids

49.06

Weight (kDa)

7.0

Isoelectric Point (pI)

33.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SLT PF01464 71 - 183 1.1e-12 Transglycosylase SLT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0012112)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 756
Acc36I ACCTGC 1 cut(s) 674
Acc65I GGTACC 1 cut(s) 518
AccB1I GGYRCC 1 cut(s) 518
AccB7I CCANNNNNTGG 3 cut(s) 49, 629, 971
AccII CGCG 3 cut(s) 133, 135, 283
AccIII TCCGGA 1 cut(s) 1141
AciI CCGC 5 cut(s) 199, 283, 636, 1115, 1205
AclWI GGATC 5 cut(s) 32, 131, 218, 326, 402
AcsI RAATTY 2 cut(s) 464, 491
AcuI CTGAAG 3 cut(s) 868, 869, 891
AcvI CACGTG 1 cut(s) 968
AcyI GRCGYC 1 cut(s) 753
AfaI GTAC 5 cut(s) 520, 798, 889, 1085, 1271
AfiI CCNNNNNNNGG 6 cut(s) 49, 315, 629, 971, 1049, 1243
AgsI TTSAA 4 cut(s) 257, 389, 412, 608
AjiI CACGTC 1 cut(s) 1249
AjnI CCWGG 1 cut(s) 48
AjuI GAANNNNNNNTTGG 2 cut(s) 889, 921
AluBI AGCT 8 cut(s) 12, 299, 344, 356, 939, 1001, 1131, 1278
AluI AGCT 8 cut(s) 12, 299, 344, 356, 939, 1001, 1131, 1278
Alw21I GWGCWC 2 cut(s) 922, 1133
Alw26I GTCTC 2 cut(s) 98, 760
AlwI GGATC 5 cut(s) 32, 131, 218, 326, 402
Aor13HI TCCGGA 1 cut(s) 1141
AoxI GGCC 2 cut(s) 112, 1172
ApeKI GCWGC 6 cut(s) 5, 80, 440, 656, 1094, 1278
ApoI RAATTY 2 cut(s) 464, 491
Asp700I GAANNNNTTC 1 cut(s) 585
Asp718I GGTACC 1 cut(s) 518
AspLEI GCGC 2 cut(s) 135, 661
AspS9I GGNCC 4 cut(s) 768, 962, 1172, 1202
AsuHPI GGTGA 2 cut(s) 116, 1064
AsuNHI GCTAGC 1 cut(s) 352
AvaII GGWCC 3 cut(s) 768, 962, 1202
AxyI CCTNAGG 1 cut(s) 1191
BanI GGYRCC 1 cut(s) 518
BanII GRGCYC 1 cut(s) 1133
BbrPI CACGTG 1 cut(s) 968
BbsI GAAGAC 2 cut(s) 578, 729
Bbv12I GWGCWC 2 cut(s) 922, 1133
BbvI GCAGC 5 cut(s) 67, 427, 643, 1106, 1265
BccI CCATC 5 cut(s) 137, 598, 625, 657, 1015
BceAI ACGGC 1 cut(s) 646
BcgI CGANNNNNNTGC 4 cut(s) 131, 165, 548, 582
BciT130I CCWGG 1 cut(s) 50
BcoDI GTCTC 2 cut(s) 98, 760
BfaI CTAG 2 cut(s) 353, 357
BfmI CTRYAG 3 cut(s) 81, 312, 996
BfuAI ACCTGC 1 cut(s) 674
BglI GCCNNNNNGGC 1 cut(s) 556
BisI GCNGC 6 cut(s) 6, 81, 441, 657, 1095, 1279
BlsI GCNGC 6 cut(s) 7, 82, 442, 658, 1096, 1280
Bme1390I CCNGG 1 cut(s) 50
Bme18I GGWCC 3 cut(s) 768, 962, 1202
BmgBI CACGTC 1 cut(s) 1249
BmgT120I GGNCC 4 cut(s) 768, 962, 1172, 1202
BmiI GGNNCC 3 cut(s) 520, 634, 1173
BmrFI CCNGG 1 cut(s) 50
BmsI GCATC 1 cut(s) 670
BmtI GCTAGC 1 cut(s) 356
BpiI GAAGAC 2 cut(s) 578, 729
BpmI CTGGAG 1 cut(s) 798
BpuEI CTTGAG 3 cut(s) 1117, 1199, 1252
BsaAI YACGTR 1 cut(s) 968
BsaBI GATNNNNATC 2 cut(s) 194, 399
BsaHI GRCGYC 1 cut(s) 753
BsaI GGTCTC 1 cut(s) 98
BsaWI WCCGGW 1 cut(s) 1141
BsaXI ACNNNNNCTCC 2 cut(s) 722, 752
Bsc4I CCNNNNNNNGG 6 cut(s) 49, 315, 629, 971, 1049, 1243
Bse118I RCCGGY 1 cut(s) 201
Bse1I ACTGG 2 cut(s) 353, 781
Bse21I CCTNAGG 1 cut(s) 1191
Bse8I GATNNNNATC 2 cut(s) 194, 399
BseAI TCCGGA 1 cut(s) 1141
BseBI CCWGG 1 cut(s) 50
BseGI GGATG 4 cut(s) 195, 590, 613, 709
BseJI GATNNNNATC 2 cut(s) 194, 399
BseLI CCNNNNNNNGG 6 cut(s) 49, 315, 629, 971, 1049, 1243
BseMII CTCAG 2 cut(s) 177, 1205
BseNI ACTGG 2 cut(s) 353, 781
BseRI GAGGAG 1 cut(s) 1280
BseXI GCAGC 5 cut(s) 67, 427, 643, 1106, 1265
BsgI GTGCAG 3 cut(s) 651, 1113, 1264
Bsh1236I CGCG 3 cut(s) 133, 135, 283
BshFI GGCC 2 cut(s) 114, 1174
BshNI GGYRCC 1 cut(s) 518
BsiHKAI GWGCWC 2 cut(s) 922, 1133
BsiSI CCGG 2 cut(s) 202, 1142
BslFI GGGAC 2 cut(s) 54, 700
BslI CCNNNNNNNGG 6 cut(s) 49, 315, 629, 971, 1049, 1243
BsmAI GTCTC 2 cut(s) 98, 760
BsmBI CGTCTC 1 cut(s) 760
BsmFI GGGAC 2 cut(s) 54, 700
BsnI GGCC 2 cut(s) 114, 1174
Bso31I GGTCTC 1 cut(s) 98
Bsp1286I GDGCHC 2 cut(s) 922, 1133
Bsp13I TCCGGA 1 cut(s) 1141
Bsp143I GATC 8 cut(s) 37, 136, 189, 223, 318, 394, 400, 1057
BspACI CCGC 5 cut(s) 199, 283, 636, 1115, 1205
BspANI GGCC 2 cut(s) 114, 1174
BspCNI CTCAG 2 cut(s) 178, 1204
BspEI TCCGGA 1 cut(s) 1141
BspFNI CGCG 3 cut(s) 133, 135, 283
BspHI TCATGA 1 cut(s) 748
BspLI GGNNCC 3 cut(s) 520, 634, 1173
BspMAI CTGCAG 1 cut(s) 85
BspMI ACCTGC 1 cut(s) 674
BspOI GCTAGC 1 cut(s) 356
BspPI GGATC 5 cut(s) 32, 131, 218, 326, 402
BspT107I GGYRCC 1 cut(s) 518
BspTNI GGTCTC 1 cut(s) 98
BsrFI RCCGGY 1 cut(s) 201
BsrI ACTGG 2 cut(s) 353, 781
BssAI RCCGGY 1 cut(s) 201
BssMI GATC 8 cut(s) 37, 136, 189, 223, 318, 394, 400, 1057
BssNI GRCGYC 1 cut(s) 753
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 2 cut(s) 32, 564
BstACI GRCGYC 1 cut(s) 753
BstBAI YACGTR 1 cut(s) 968
BstC8I GCNNGC 6 cut(s) 10, 203, 354, 941, 1067, 1227
BstDEI CTNAG 5 cut(s) 186, 300, 571, 1061, 1191
BstEII GGTNACC 1 cut(s) 368
BstENI CCTNNNNNAGG 1 cut(s) 1047
BstF5I GGATG 4 cut(s) 195, 590, 613, 709
BstFNI CGCG 3 cut(s) 133, 135, 283
BstHHI GCGC 2 cut(s) 135, 661
BstKTI GATC 8 cut(s) 40, 139, 192, 226, 321, 397, 403, 1060
BstMAI GTCTC 2 cut(s) 98, 760
BstMBI GATC 8 cut(s) 37, 136, 189, 223, 318, 394, 400, 1057
BstMWI GCNNNNNNNGC 2 cut(s) 556, 665
BstNI CCWGG 1 cut(s) 50
BstPI GGTNACC 1 cut(s) 368
BstSCI CCNGG 1 cut(s) 48
BstSFI CTRYAG 3 cut(s) 81, 312, 996
BstUI CGCG 3 cut(s) 133, 135, 283
BstV1I GCAGC 5 cut(s) 67, 427, 643, 1106, 1265
BstV2I GAAGAC 2 cut(s) 578, 729
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
Bsu36I CCTNAGG 1 cut(s) 1191
BsuRI GGCC 2 cut(s) 114, 1174
BtrI CACGTC 1 cut(s) 1249
BtsCI GGATG 4 cut(s) 195, 590, 613, 709
BtsI GCAGTG 1 cut(s) 1214
BtsIMutI CAGTG 1 cut(s) 1214
BveI ACCTGC 1 cut(s) 674
Cac8I GCNNGC 6 cut(s) 10, 203, 354, 941, 1067, 1227
CciI TCATGA 1 cut(s) 748
CfoI GCGC 2 cut(s) 135, 661
Cfr10I RCCGGY 1 cut(s) 201
Cfr13I GGNCC 4 cut(s) 768, 962, 1172, 1202
CseI GACGC 1 cut(s) 702
Csp6I GTAC 5 cut(s) 519, 797, 888, 1084, 1270
CviAII CATG 9 cut(s) 322, 629, 653, 692, 727, 749, 839, 1005, 1288
CviQI GTAC 5 cut(s) 519, 797, 888, 1084, 1270
DdeI CTNAG 5 cut(s) 186, 300, 571, 1061, 1191
DpnI GATC 8 cut(s) 39, 138, 191, 225, 320, 396, 402, 1059
DpnII GATC 8 cut(s) 37, 136, 189, 223, 318, 394, 400, 1057
EciI GGCGGA 1 cut(s) 188
Ecl136II GAGCTC 1 cut(s) 1131
Eco24I GRGCYC 1 cut(s) 1133
Eco31I GGTCTC 1 cut(s) 98
Eco32I GATATC 1 cut(s) 865
Eco47I GGWCC 3 cut(s) 768, 962, 1202
Eco53kI GAGCTC 1 cut(s) 1131
Eco57I CTGAAG 3 cut(s) 868, 869, 891
Eco72I CACGTG 1 cut(s) 968
Eco81I CCTNAGG 1 cut(s) 1191
Eco91I GGTNACC 1 cut(s) 368
EcoICRI GAGCTC 1 cut(s) 1131
EcoNI CCTNNNNNAGG 1 cut(s) 1047
EcoO65I GGTNACC 1 cut(s) 368
EcoRI GAATTC 1 cut(s) 491
EcoRII CCWGG 1 cut(s) 48
EcoRV GATATC 1 cut(s) 865
EcoT38I GRGCYC 1 cut(s) 1133
Esp3I CGTCTC 1 cut(s) 760
FaeI CATG 9 cut(s) 325, 632, 656, 695, 730, 752, 842, 1008, 1291
FalI AAGNNNNNCTT 2 cut(s) 570, 602
FaqI GGGAC 2 cut(s) 54, 700
FatI CATG 9 cut(s) 321, 628, 652, 691, 726, 748, 838, 1004, 1287
FauNDI CATATG 1 cut(s) 379
Fnu4HI GCNGC 6 cut(s) 6, 81, 441, 657, 1095, 1279
FokI GGATG 4 cut(s) 182, 577, 600, 716
FriOI GRGCYC 1 cut(s) 1133
Fsp4HI GCNGC 6 cut(s) 6, 81, 441, 657, 1095, 1279
FspBI CTAG 2 cut(s) 353, 357
GlaI GCGC 2 cut(s) 134, 660
GluI GCNGC 6 cut(s) 6, 81, 441, 657, 1095, 1279
GsuI CTGGAG 1 cut(s) 798
HaeIII GGCC 2 cut(s) 114, 1174
HapII CCGG 2 cut(s) 202, 1142
HgaI GACGC 1 cut(s) 702
HhaI GCGC 2 cut(s) 135, 661
Hin1I GRCGYC 1 cut(s) 753
Hin1II CATG 9 cut(s) 325, 632, 656, 695, 730, 752, 842, 1008, 1291
Hin6I GCGC 2 cut(s) 133, 659
HinP1I GCGC 2 cut(s) 133, 659
HinfI GANTC 4 cut(s) 742, 984, 1186, 1196
HpaII CCGG 2 cut(s) 202, 1142
HphI GGTGA 2 cut(s) 116, 1064
Hpy166II GTNNAC 4 cut(s) 124, 215, 306, 768
Hpy188I TCNGA 2 cut(s) 710, 962
Hpy8I GTNNAC 4 cut(s) 124, 215, 306, 768
HpyAV CCTTC 7 cut(s) 169, 263, 520, 602, 844, 915, 1118
HpyCH4III ACNGT 2 cut(s) 32, 564
HpyCH4IV ACGT 3 cut(s) 753, 967, 1248
HpyCH4V TGCA 9 cut(s) 83, 248, 325, 668, 683, 860, 926, 1094, 1281
HpyF10VI GCNNNNNNNGC 2 cut(s) 556, 665
HpyF3I CTNAG 5 cut(s) 186, 300, 571, 1061, 1191
HpySE526I ACGT 3 cut(s) 753, 967, 1248
Hsp92I GRCGYC 1 cut(s) 753
Hsp92II CATG 9 cut(s) 325, 632, 656, 695, 730, 752, 842, 1008, 1291
HspAI GCGC 2 cut(s) 133, 659
Kpn2I TCCGGA 1 cut(s) 1141
KpnI GGTACC 1 cut(s) 522
KroI GCCGGC 1 cut(s) 201
KroNI GCCGGC 1 cut(s) 203
Kzo9I GATC 8 cut(s) 37, 136, 189, 223, 318, 394, 400, 1057
LmnI GCTCC 3 cut(s) 638, 1128, 1275
Lsp1109I GCAGC 5 cut(s) 67, 427, 643, 1106, 1265
LweI GCATC 1 cut(s) 670
MaeI CTAG 2 cut(s) 353, 357
MaeII ACGT 3 cut(s) 753, 967, 1248
MaeIII GTNAC 1 cut(s) 368
MalI GATC 8 cut(s) 39, 138, 191, 225, 320, 396, 402, 1059
MboI GATC 8 cut(s) 37, 136, 189, 223, 318, 394, 400, 1057
MboII GAAGA 5 cut(s) 65, 395, 500, 578, 734
MflI RGATCY 1 cut(s) 223
MhlI GDGCHC 2 cut(s) 922, 1133
MluCI AATT 7 cut(s) 56, 464, 491, 498, 624, 897, 975
MmeI TCCRAC 2 cut(s) 79, 940
MnlI CCTC 8 cut(s) 137, 319, 682, 724, 922, 1200, 1237, 1258
MroI TCCGGA 1 cut(s) 1141
MroNI GCCGGC 1 cut(s) 201
MroXI GAANNNNTTC 1 cut(s) 585
MseI TTAA 2 cut(s) 450, 900
MslI CAYNNNNRTG 2 cut(s) 378, 1286
MspA1I CMGCKG 1 cut(s) 344
MspI CCGG 2 cut(s) 202, 1142
MspR9I CCNGG 1 cut(s) 50
MvaI CCWGG 1 cut(s) 50
MvnI CGCG 3 cut(s) 133, 135, 283
MwoI GCNNNNNNNGC 2 cut(s) 556, 665
NaeI GCCGGC 1 cut(s) 203
NdeI CATATG 1 cut(s) 379
NdeII GATC 8 cut(s) 37, 136, 189, 223, 318, 394, 400, 1057
NgoMIV GCCGGC 1 cut(s) 201
NheI GCTAGC 1 cut(s) 352
NlaIII CATG 9 cut(s) 325, 632, 656, 695, 730, 752, 842, 1008, 1291
NlaIV GGNNCC 3 cut(s) 520, 634, 1173
PagI TCATGA 1 cut(s) 748
PdiI GCCGGC 1 cut(s) 203
PdmI GAANNNNTTC 1 cut(s) 585
PfeI GAWTC 4 cut(s) 742, 984, 1186, 1196
PflMI CCANNNNNTGG 3 cut(s) 49, 629, 971
PkrI GCNGC 6 cut(s) 7, 82, 442, 658, 1096, 1280
PmaCI CACGTG 1 cut(s) 968
PmlI CACGTG 1 cut(s) 968
Ppu21I YACGTR 1 cut(s) 968
Psp124BI GAGCTC 1 cut(s) 1133
Psp6I CCWGG 1 cut(s) 48
PspCI CACGTG 1 cut(s) 968
PspEI GGTNACC 1 cut(s) 368
PspGI CCWGG 1 cut(s) 48
PspN4I GGNNCC 3 cut(s) 520, 634, 1173
PspPI GGNCC 4 cut(s) 768, 962, 1172, 1202
PstI CTGCAG 1 cut(s) 85
PsuI RGATCY 1 cut(s) 223
PvuII CAGCTG 1 cut(s) 344
RsaI GTAC 5 cut(s) 520, 798, 889, 1085, 1271
RsaNI GTAC 5 cut(s) 519, 797, 888, 1084, 1270
RseI CAYNNNNRTG 2 cut(s) 378, 1286
SacI GAGCTC 1 cut(s) 1133
SaqAI TTAA 2 cut(s) 450, 900
SatI GCNGC 6 cut(s) 6, 81, 441, 657, 1095, 1279
Sau3AI GATC 8 cut(s) 37, 136, 189, 223, 318, 394, 400, 1057
Sau96I GGNCC 4 cut(s) 768, 962, 1172, 1202
ScrFI CCNGG 1 cut(s) 50
SduI GDGCHC 2 cut(s) 922, 1133
SfaNI GCATC 1 cut(s) 670
SfcI CTRYAG 3 cut(s) 81, 312, 996
SinI GGWCC 3 cut(s) 768, 962, 1202
SmiMI CAYNNNNRTG 2 cut(s) 378, 1286
SmlI CTYRAG 3 cut(s) 1132, 1214, 1231
SmoI CTYRAG 3 cut(s) 1132, 1214, 1231
Sse9I AATT 7 cut(s) 56, 464, 491, 498, 624, 897, 975
SsiI CCGC 5 cut(s) 199, 283, 636, 1115, 1205
SspI AATATT 1 cut(s) 20
SspMI CTAG 2 cut(s) 353, 357
SstI GAGCTC 1 cut(s) 1133
StyD4I CCNGG 1 cut(s) 48
TaaI ACNGT 2 cut(s) 32, 564
TaiI ACGT 3 cut(s) 756, 970, 1251
TaqI TCGA 3 cut(s) 987, 1079, 1261
TaqII GACCGA 1 cut(s) 182
TasI AATT 7 cut(s) 56, 464, 491, 498, 624, 897, 975
TatI WGTACW 2 cut(s) 887, 1083
TfiI GAWTC 4 cut(s) 742, 984, 1186, 1196
Tru1I TTAA 2 cut(s) 450, 900
Tru9I TTAA 2 cut(s) 450, 900
TscAI CASTG 1 cut(s) 1214
TseI GCWGC 6 cut(s) 5, 80, 440, 656, 1094, 1278
TspDTI ATGAA 6 cut(s) 188, 366, 484, 617, 993, 1137
TspRI CASTG 1 cut(s) 1214
Van91I CCANNNNNTGG 3 cut(s) 49, 629, 971
VpaK11BI GGWCC 3 cut(s) 768, 962, 1202
XagI CCTNNNNNAGG 1 cut(s) 1047
XapI RAATTY 2 cut(s) 464, 491
XmnI GAANNNNTTC 1 cut(s) 585
XspI CTAG 2 cut(s) 353, 357
ZraI GACGTC 1 cut(s) 754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.