Rh5AG172500

Transglycosylase SLT domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0012112
Physical Location & Seq
Forward (+)
19061604 .. 19069857
8254 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG172500.1

Sequence Viewer

Length: 1134 bp
ATGACTGTCAGCTATAAATTTTGGAATGAATGCATTGATCCCTTGGACATGCAAGCACTGTGGAATGTTCCTAAAGTGAGCGCTGAATGGGAAGATGCTGGAGAGACCAAAGGACAGAAAGTTCACCTCTCACGTGATCCTGATGGACAGGTTTATTTGACACAGACTGAGATGAAGGCTGTGGCTGAGATCATCGTTAGCAGGCATTTTTCTGGAAAGATAGATCCTGATATGGTTTGTGCTATTGCTGAACTTGAAAGTGATAGACAGCCACTTTGTCAGCGGTATGACAAAAAAGCTAAGGCCACTCACCTAGGGATGATGCAAATTTTACCAAAAACTGCCGATTGGCTGGCTAGTGAGAAGGGTTACGGGGCATATCAATTGAATGGGAATGAACTTCTCCTGTTCAGGCCTTTTGAAAATGTATATTTTGGTGCTGCTTATCTTATTTGGTTGTCAAGCTTTGAGCAGAAAGAAAGAAGTGAGGAGTTTGTAGTTAGGGCATACAGAGGAGGTACTAAAAAGGCAACTCACAAATCAACTCTGAAGTATTGGCAACGGTATCTTTCCGTCAAAGAATCTCTTCCATCCAGAAAAAGTCTTGAAGGTCATCGATCTGTTGAAGAGGTTAATGCTTCTCTTGCCCTCGCTAAAAAGACTGGTTCATCGCAAAACACAGGTGGTATGTACACATATTGGGATTCAGTAGCTTCTCCAGAAGACATGGTGGACATGTGGAATCATCCTGAAGTCTCTAAAGAGTGGACTAATGCTGGAGAGAAACAGGGACGAGTGCGCTTCTCCCAAGATGATAAGAAAAGACCATATCTTTCTCGGGTGGAACTGAAGGCAGTGGCAGAAATCATACTCATAAAACACTTCAGCACAAAGCCACTTAAAGTTTCAGTTCTTTGTGCTCTGGCAGAGATTATAAGCATGCGATTCCTGAGTGGCATTGGACCACGTCCTGGTATAATGGGAATCGACTATTCTACAGTTGTATGGCTTTACAGGGAGATGGGCTTTAGGGCATATAGAACTATTTCTGTTGATGATATTTCCAAGCCATTTGTGTCAATGTACTTTGGTGCAGCCTATTTAGTATGGTTAGTGGAATGTGAAGGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SLT

Protein Analysis

377

Amino Acids

43.03

Weight (kDa)

8.38

Isoelectric Point (pI)

28.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SLT PF01464 73 - 185 3.2e-11 Transglycosylase SLT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012112)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16290 AT1G16290
fragaria_vesca FvH4_3g14650
malus_domestica MD05G1234300.v1.1 MD10G1210800.v1.1
prunus_persica Prupe.4G131800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0024141
rosa_laevigata RLG00000032772
rosa_multiflora Rmu_sc0004033.1_g000015
rosa_roxburghii Rroxscaffold_1G00055100 Rroxscaffold_1G00055680
rosa_rugosa Rorug05G0081800 Rorug05G0081800 Rorug05G0081900
rosa_samantha Rh5AG172500 Rh5BG169100 Rh5CG184800 Rh5DG171300
rosa_wichuraiana Rw5G015560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 935
AccB7I CCANNNNNTGG 1 cut(s) 971
AciI CCGC 1 cut(s) 283
AclWI GGATC 3 cut(s) 32, 131, 218
AcsI RAATTY 2 cut(s) 17, 327
AcuI CTGAAG 4 cut(s) 569, 771, 868, 869
AcvI CACGTG 1 cut(s) 134
AfaI GTAC 3 cut(s) 520, 692, 1085
AfeI AGCGCT 1 cut(s) 82
AfiI CCNNNNNNNGG 1 cut(s) 971
AflIII ACRYGT 1 cut(s) 735
AgsI TTSAA 5 cut(s) 257, 388, 422, 608, 626
AjiI CACGTC 1 cut(s) 968
AjnI CCWGG 1 cut(s) 970
AloI GAACNNNNNNTCC 2 cut(s) 105, 137
AluBI AGCT 4 cut(s) 12, 299, 465, 713
AluI AGCT 4 cut(s) 12, 299, 465, 713
Alw21I GWGCWC 1 cut(s) 922
Alw26I GTCTC 2 cut(s) 98, 760
AlwI GGATC 3 cut(s) 32, 131, 218
Ama87I CYCGRG 1 cut(s) 837
Aor51HI AGCGCT 1 cut(s) 82
AoxI GGCC 2 cut(s) 303, 413
ApeKI GCWGC 2 cut(s) 440, 1094
ApoI RAATTY 2 cut(s) 17, 327
ArsI GACNNNNNNTTYG 2 cut(s) 258, 290
Asp700I GAANNNNTTC 2 cut(s) 585, 1045
AspA2I CCTAGG 1 cut(s) 313
AspLEI GCGC 2 cut(s) 83, 801
AspS9I GGNCC 1 cut(s) 962
AsuHPI GGTGA 2 cut(s) 116, 302
AvaI CYCGRG 1 cut(s) 837
AvaII GGWCC 1 cut(s) 962
AvrII CCTAGG 1 cut(s) 313
BbrPI CACGTG 1 cut(s) 134
BbsI GAAGAC 1 cut(s) 729
Bbv12I GWGCWC 1 cut(s) 922
BbvI GCAGC 2 cut(s) 427, 1106
BccI CCATC 3 cut(s) 137, 598, 1015
BciT130I CCWGG 1 cut(s) 972
BcoDI GTCTC 2 cut(s) 98, 760
BfaI CTAG 2 cut(s) 314, 357
BfmI CTRYAG 1 cut(s) 996
BfoI RGCGCY 1 cut(s) 84
BisI GCNGC 2 cut(s) 441, 1095
BlnI CCTAGG 1 cut(s) 313
BlsI GCNGC 2 cut(s) 442, 1096
Bme1390I CCNGG 1 cut(s) 972
Bme18I GGWCC 1 cut(s) 962
BmeT110I CYCGRG 1 cut(s) 837
BmgBI CACGTC 1 cut(s) 968
BmgT120I GGNCC 1 cut(s) 962
BmrFI CCNGG 1 cut(s) 972
BmsI GCATC 2 cut(s) 85, 312
BpiI GAAGAC 1 cut(s) 729
BpmI CTGGAG 3 cut(s) 120, 702, 798
Bpu10I CCTNAGC 1 cut(s) 300
Bsa29I ATCGAT 1 cut(s) 616
BsaAI YACGTR 1 cut(s) 134
BsaI GGTCTC 1 cut(s) 98
BsaJI CCNNGG 2 cut(s) 42, 313
Bsc4I CCNNNNNNNGG 1 cut(s) 971
Bse1I ACTGG 1 cut(s) 667
BseBI CCWGG 1 cut(s) 972
BseCI ATCGAT 1 cut(s) 616
BseDI CCNNGG 2 cut(s) 42, 313
BseGI GGATG 3 cut(s) 324, 590, 745
BseLI CCNNNNNNNGG 1 cut(s) 971
BseMII CTCAG 3 cut(s) 159, 177, 941
BseNI ACTGG 1 cut(s) 667
BseRI GAGGAG 2 cut(s) 503, 528
BseXI GCAGC 2 cut(s) 427, 1106
BsgI GTGCAG 1 cut(s) 1113
BshFI GGCC 2 cut(s) 305, 415
BshVI ATCGAT 1 cut(s) 616
BsiHKAI GWGCWC 1 cut(s) 922
BsiHKCI CYCGRG 1 cut(s) 837
BslFI GGGAC 1 cut(s) 804
BslI CCNNNNNNNGG 1 cut(s) 971
BsmAI GTCTC 2 cut(s) 98, 760
BsmFI GGGAC 1 cut(s) 804
BsmI GAATGC 1 cut(s) 35
BsnI GGCC 2 cut(s) 305, 415
Bso31I GGTCTC 1 cut(s) 98
BsoBI CYCGRG 1 cut(s) 837
Bsp1286I GDGCHC 1 cut(s) 922
Bsp1407I TGTACA 1 cut(s) 690
Bsp143I GATC 5 cut(s) 37, 136, 189, 223, 617
BspACI CCGC 1 cut(s) 283
BspANI GGCC 2 cut(s) 305, 415
BspCNI CTCAG 3 cut(s) 160, 178, 942
BspDI ATCGAT 1 cut(s) 616
BspPI GGATC 3 cut(s) 32, 131, 218
BspTNI GGTCTC 1 cut(s) 98
BsrGI TGTACA 1 cut(s) 690
BsrI ACTGG 1 cut(s) 667
BssECI CCNNGG 2 cut(s) 42, 313
BssMI GATC 5 cut(s) 37, 136, 189, 223, 617
BssT1I CCWWGG 2 cut(s) 42, 313
Bst2UI CCWGG 1 cut(s) 972
Bst4CI ACNGT 4 cut(s) 7, 60, 564, 1000
Bst6I CTCTTC 2 cut(s) 591, 621
BstAUI TGTACA 1 cut(s) 690
BstBAI YACGTR 1 cut(s) 134
BstC8I GCNNGC 4 cut(s) 54, 203, 354, 941
BstDEI CTNAG 4 cut(s) 168, 186, 300, 950
BstF5I GGATG 3 cut(s) 324, 590, 745
BstH2I RGCGCY 1 cut(s) 84
BstHHI GCGC 2 cut(s) 83, 801
BstKTI GATC 5 cut(s) 40, 139, 192, 226, 620
BstMAI GTCTC 2 cut(s) 98, 760
BstMBI GATC 5 cut(s) 37, 136, 189, 223, 617
BstMWI GCNNNNNNNGC 1 cut(s) 644
BstNI CCWGG 1 cut(s) 972
BstNSI RCATGY 3 cut(s) 52, 739, 943
BstSCI CCNGG 1 cut(s) 970
BstSFI CTRYAG 1 cut(s) 996
BstV1I GCAGC 2 cut(s) 427, 1106
BstV2I GAAGAC 1 cut(s) 729
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
Bsu15I ATCGAT 1 cut(s) 616
BsuRI GGCC 2 cut(s) 305, 415
BsuTUI ATCGAT 1 cut(s) 616
BtgZI GCGATG 1 cut(s) 654
BtrI CACGTC 1 cut(s) 968
BtsCI GGATG 3 cut(s) 324, 590, 745
BtsI GCAGTG 1 cut(s) 861
BtsIMutI CAGTG 2 cut(s) 56, 861
Cac8I GCNNGC 4 cut(s) 54, 203, 354, 941
CfoI GCGC 2 cut(s) 83, 801
Cfr13I GGNCC 1 cut(s) 962
ClaI ATCGAT 1 cut(s) 616
Csp6I GTAC 3 cut(s) 519, 691, 1084
CspCI CAANNNNNGTGG 2 cut(s) 41, 76
CviAII CATG 4 cut(s) 49, 727, 736, 940
CviQI GTAC 3 cut(s) 519, 691, 1084
DdeI CTNAG 4 cut(s) 168, 186, 300, 950
DpnI GATC 5 cut(s) 39, 138, 191, 225, 619
DpnII GATC 5 cut(s) 37, 136, 189, 223, 617
Eam1104I CTCTTC 2 cut(s) 591, 621
EarI CTCTTC 2 cut(s) 591, 621
Eco130I CCWWGG 2 cut(s) 42, 313
Eco147I AGGCCT 1 cut(s) 415
Eco31I GGTCTC 1 cut(s) 98
Eco47I GGWCC 1 cut(s) 962
Eco47III AGCGCT 1 cut(s) 82
Eco57I CTGAAG 4 cut(s) 569, 771, 868, 869
Eco72I CACGTG 1 cut(s) 134
Eco88I CYCGRG 1 cut(s) 837
EcoRII CCWGG 1 cut(s) 970
EcoT14I CCWWGG 2 cut(s) 42, 313
EcoT22I ATGCAT 1 cut(s) 35
ErhI CCWWGG 2 cut(s) 42, 313
FaeI CATG 4 cut(s) 52, 730, 739, 943
FalI AAGNNNNNCTT 2 cut(s) 570, 602
FaqI GGGAC 1 cut(s) 804
FatI CATG 4 cut(s) 48, 726, 735, 939
Fnu4HI GCNGC 2 cut(s) 441, 1095
FokI GGATG 3 cut(s) 331, 577, 732
Fsp4HI GCNGC 2 cut(s) 441, 1095
FspBI CTAG 2 cut(s) 314, 357
GlaI GCGC 2 cut(s) 82, 800
GluI GCNGC 2 cut(s) 441, 1095
GsuI CTGGAG 3 cut(s) 120, 702, 798
HaeII RGCGCY 1 cut(s) 84
HaeIII GGCC 2 cut(s) 305, 415
HhaI GCGC 2 cut(s) 83, 801
Hin1II CATG 4 cut(s) 52, 730, 739, 943
Hin6I GCGC 2 cut(s) 81, 799
HinP1I GCGC 2 cut(s) 81, 799
HindIII AAGCTT 1 cut(s) 463
HinfI GANTC 5 cut(s) 581, 704, 742, 945, 984
HphI GGTGA 2 cut(s) 116, 302
Hpy166II GTNNAC 4 cut(s) 124, 693, 733, 768
Hpy188I TCNGA 1 cut(s) 549
Hpy188III TCNNGA 8 cut(s) 140, 213, 227, 594, 605, 719, 749, 949
Hpy8I GTNNAC 4 cut(s) 124, 693, 733, 768
HpyAV CCTTC 5 cut(s) 169, 358, 602, 844, 1118
HpyCH4III ACNGT 4 cut(s) 7, 60, 564, 1000
HpyCH4IV ACGT 2 cut(s) 133, 967
HpyCH4V TGCA 4 cut(s) 33, 52, 325, 1094
HpyF10VI GCNNNNNNNGC 1 cut(s) 644
HpyF3I CTNAG 4 cut(s) 168, 186, 300, 950
HpySE526I ACGT 2 cut(s) 133, 967
Hsp92II CATG 4 cut(s) 52, 730, 739, 943
HspAI GCGC 2 cut(s) 81, 799
Kzo9I GATC 5 cut(s) 37, 136, 189, 223, 617
Lsp1109I GCAGC 2 cut(s) 427, 1106
LweI GCATC 2 cut(s) 85, 312
MaeI CTAG 2 cut(s) 314, 357
MaeII ACGT 2 cut(s) 133, 967
MaeIII GTNAC 1 cut(s) 368
MalI GATC 5 cut(s) 39, 138, 191, 225, 619
MboI GATC 5 cut(s) 37, 136, 189, 223, 617
MboII GAAGA 4 cut(s) 104, 578, 638, 734
MfeI CAATTG 1 cut(s) 383
MflI RGATCY 1 cut(s) 223
MhlI GDGCHC 1 cut(s) 922
MluCI AATT 3 cut(s) 17, 327, 383
MnlI CCTC 7 cut(s) 137, 481, 506, 509, 622, 659, 1122
Mph1103I ATGCAT 1 cut(s) 35
MroXI GAANNNNTTC 2 cut(s) 585, 1045
MseI TTAA 2 cut(s) 633, 900
MspA1I CMGCKG 1 cut(s) 283
MspR9I CCNGG 1 cut(s) 972
MunI CAATTG 1 cut(s) 383
Mva1269I GAATGC 1 cut(s) 35
MvaI CCWGG 1 cut(s) 972
MwoI GCNNNNNNNGC 1 cut(s) 644
NdeII GATC 5 cut(s) 37, 136, 189, 223, 617
NlaIII CATG 4 cut(s) 52, 730, 739, 943
NsiI ATGCAT 1 cut(s) 35
NspI RCATGY 3 cut(s) 52, 739, 943
PaeI GCATGC 1 cut(s) 943
PceI AGGCCT 1 cut(s) 415
PciI ACATGT 1 cut(s) 735
PctI GAATGC 1 cut(s) 35
PdmI GAANNNNTTC 2 cut(s) 585, 1045
PfeI GAWTC 5 cut(s) 581, 704, 742, 945, 984
PflFI GACNNNGTC 1 cut(s) 966
PflMI CCANNNNNTGG 1 cut(s) 971
PkrI GCNGC 2 cut(s) 442, 1096
PmaCI CACGTG 1 cut(s) 134
PmlI CACGTG 1 cut(s) 134
Ppu21I YACGTR 1 cut(s) 134
PscI ACATGT 1 cut(s) 735
PsiI TTATAA 1 cut(s) 935
Psp6I CCWGG 1 cut(s) 970
PspCI CACGTG 1 cut(s) 134
PspGI CCWGG 1 cut(s) 970
PspPI GGNCC 1 cut(s) 962
PsuI RGATCY 1 cut(s) 223
PsyI GACNNNGTC 1 cut(s) 966
RsaI GTAC 3 cut(s) 520, 692, 1085
RsaNI GTAC 3 cut(s) 519, 691, 1084
SaqAI TTAA 2 cut(s) 633, 900
SatI GCNGC 2 cut(s) 441, 1095
Sau3AI GATC 5 cut(s) 37, 136, 189, 223, 617
Sau96I GGNCC 1 cut(s) 962
ScrFI CCNGG 1 cut(s) 972
SduI GDGCHC 1 cut(s) 922
SfaNI GCATC 2 cut(s) 85, 312
SfcI CTRYAG 1 cut(s) 996
SinI GGWCC 1 cut(s) 962
SphI GCATGC 1 cut(s) 943
Sse9I AATT 3 cut(s) 17, 327, 383
SseBI AGGCCT 1 cut(s) 415
SsiI CCGC 1 cut(s) 283
SspMI CTAG 2 cut(s) 314, 357
StuI AGGCCT 1 cut(s) 415
StyD4I CCNGG 1 cut(s) 970
StyI CCWWGG 2 cut(s) 42, 313
TaaI ACNGT 4 cut(s) 7, 60, 564, 1000
TaiI ACGT 2 cut(s) 136, 970
TaqI TCGA 2 cut(s) 616, 987
TasI AATT 3 cut(s) 17, 327, 383
TatI WGTACW 2 cut(s) 690, 1083
TfiI GAWTC 5 cut(s) 581, 704, 742, 945, 984
Tru1I TTAA 2 cut(s) 633, 900
Tru9I TTAA 2 cut(s) 633, 900
TscAI CASTG 2 cut(s) 63, 861
TseI GCWGC 2 cut(s) 440, 1094
TspDTI ATGAA 4 cut(s) 42, 188, 411, 657
TspGWI ACGGA 1 cut(s) 562
TspRI CASTG 2 cut(s) 63, 861
Tth111I GACNNNGTC 1 cut(s) 966
Van91I CCANNNNNTGG 1 cut(s) 971
VpaK11BI GGWCC 1 cut(s) 962
XapI RAATTY 2 cut(s) 17, 327
XceI RCATGY 3 cut(s) 52, 739, 943
XmaJI CCTAGG 1 cut(s) 313
XmnI GAANNNNTTC 2 cut(s) 585, 1045
XspI CTAG 2 cut(s) 314, 357
Zsp2I ATGCAT 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.